rna8212, rna8212 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8212
Unique Name	rna8212
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2756
Alignment location	KK037248.1:98373..100200 +

Link to JBrowse

Properties


Property Name	Value
Product	lysosomal aspartic protease
Orig transcript id	gnl\|cribi\|Naga_100011g25.3434.mrna
Orig protein id	gnl\|cribi\|Naga_100011g25.3434
Gene	ASP
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:98373..100200 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ASP	gene7955	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8212	rna8212-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22434.1	cds8188	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:98373..100200+
coding sequence from alignment at KK037248.1:98373..100200+

mRNA sequence

>rna8212 ID=rna8212|Name=rna8212|organism=Nannochloropsis gaditana|type=mRNA|length=2756bp
AAAGACAGACTGTGACCAGCCATCCAGAAAGTGCGAGCAACCGACTCCTA
CCATTTGCCGCCGAACTTCCGCGACAGGCCATATCTTGAGCGTTTCTCCA
GTCAATTCGATTGTATATTCTATACTTGTCACAAGGGCATCAAACTAGCT
ATGCTAAGGTCATCAAGAGGTTATAGACATTTTGAAAAATCATCATCGAT
TGATCGCACCTCAAAACGGTTAGGTGTGGTCATATACCTCTCTTTCGCGT
TGCTCTTAGGAGCTTTACCGTGGCTTCTGTGGCCTGGCACTGCTCCTCAT
GGGGATCGCACCGGACCAGGAAACATGCTGCTATTCGCAGTAGCTGAAAA
TAGTCCTGACTCAAATACAGCCACTTTTCATGGCGCAGAGCCTGCAGCAG
CGGAGCATAAATCCGCGACTTTAAGCACCCAAGCCGAGGACTTGAGGGAT
CCATTGATTGACGCTGAAAGAATTAGGGAGAATGACGAAGGAAAGGATAA
AATGGGAGAAACTGAGGAAACCCAGAACCAAAATGACGAAAAAGCTGGAA
AGGAAGGAGGCGTCAAAGTAGCCGCTGAGAAGGTTGCCGCACCCGCAACC
GAGGAGGAATTAGAAAAAATCGTCCAAGATGTTGAGGAAAATGAAATGAA
TTCAAGCAAAAACAAGAAGGGTGAAGAAAAACTACCCGCTGCCGAACTCA
ACGGTGACGTGATAGGTGTTCCTGACGCCAAGAAATTGGAAAAAGGGACA
AAGGGATATAAGAAATCGATAGCAGCGACCCTCAAAACAGAAGCTGAAAA
AAAGAGAAAGCCCCAAGAGAACCGTCCAGACCAAACTGAAGCCGATGCCG
AGAAGGATACCAGGGATCAAGTGATTGTTAAAATAGCCAATAAAGAAACG
GGTAAGGTGTTGGCAACTTCTGTCCGAAAGGCCGACAAGGACCCCTTTGT
GCGCCTTGCACCTCAAGACCCGCACATCGACAAAACCCTGGCCAAGGAAC
GCCGTATGCGCGTGAAGACGGCGATGAAACGAGCTTGGAATGCGTACCAC
GCCCACGCCTGGGGAAAGGACACGATTCTACCCATCTCCCTCACATCGGC
GAACAGGTGGGGCGGTATGGCCATGACGATGCTTGACTCGCTTTCTACCC
TGTGGGTGATGGGCCTGAAAGAGGAGTTCGAGCAAGCGCGGGACTGGATC
GCAGAAAACCTCAGCTTCAAAAGCGTGGGCCACATCTCGGTCTTCGAGAC
GAATATTCGGGCTTTGGGCGGCCTCCTGTCCGCCTTCGACCTGTCCAGGG
ACAAGGTCTTCCTGGAGAAGGCCGCGGAGCTCGCGGATATGCTCCTCCCA
GCTTTTGACTCTCCCACCGGATTCCCGATCAACGGGCTCATCCTCTCCGC
AGGCTTGCCCAGCGGCAGCCACCAGGCCTGCTTGGCCGAGTTCGGTACCG
TGCAGCTCGAATTTAGGTACCTGAGCCACGCGACGGGAAATCCCATCTAC
GCGAAGAAGGCCATGCACGTCTATGAAAGGATGCACGAGGAGAGCGCTGA
CGTGGCTGAAAAAGGGCTTTTCAGGCTGGACTTCAACTCGGACACCGGCG
CCTGGGGTGGGAAACACTACTCGGTGGGCGCGCGTGGTGACTCCTTCTAT
GAGTACCTCCTCAAGACGTGGCTGCAGGGCAACAAGAAGGAAACATGGCT
TCGGGAGATGTTTGACGAGTCGGTGGACGGCGCGGAGGAGCTCTTGATCG
CCAGAGGCCCAGGGGGCAGACTTTACATCGCCAACAATGATAACGGGATG
CAAGCCAAGCGCATGGAGCACCTCGCCTGCTTCTACCCTGGCACTCTCGC
ACTGGGGGCCGCGACCCTGGAGACGAAAGGCGACGCGGTCCTCGAAAAGC
GGGCCACTCACTACATGGACCTGGCGCGGGAGCTCGGAGAAACCTGCTAC
CAGTTTGCAGGCTCACAAATGACGGGCCTGGCGCCCGATTCGGTGGTTTT
CGACCAGGACGGCGTGCCGCAAGCCTCGGACCCGCGATACATCCTGCGGC
CGGAGGTCGCCGAGTCCATGTACTACCTGCATCTGCTGGACGGGGACCCG
AAGTGGCGCGAGTATGGCGCCAAGCTGTTCGAGGCCATCGACTTCTACTG
CCGCACGAACGAGGCGTATGCTCAGGTCCGGCTCTCAAGCGGGCCGTCGG
GCAGGCGGAGCGTGGCTTTGCGGGGGGCGGAGAGGAAGCCTTCCGATGTA
GGCGGGGAAGGAGCGTCGCAGGCCGAGCAGTCGGGGAAGGCGAAGGACAT
GGGGCTGGTGACTCAGGAGGACGACATGGAGTCATTCTTTCTGGCGGAGA
CCCTCAAGTACCTGTACCTCATCCAAGAGACAGAGCCGGGGGAGGTGGAT
CTGTCGCGTCAGGTCTTCAACACTGAGGCTCACCCTCTCCACATATTCGA
CGAATAGGGGCATAGGGATAGAAGTTGATTGCGGGATGACGGGTCGTCCA
GAGATATAGGACTTTAAATGATGAGTATGTTTTTTTCCAAAGTCTACTCG
CGGTCTCGTGACAAAGTGTGTGGGCTATAACATTACTTAATTAACCGATT
TCGTAAATTATACCTGTCCCCTGCTCGTCATTTTATTCCTTCGCAAGCGA
AATTTCACGCCATAAGCCTTGCAAGTACAGGACGCGTGTAATCCTCGATT
CTGGTCAATCGTGCTCCTTGTTTCCAACCCTTTCCGTTTGACTTATTTAC
TTCCAG

protein sequence of rna8212

>rna8212-protein ID=rna8212-protein|Name=rna8212|organism=Nannochloropsis gaditana|type=polypeptide|length=389bp
MKQSHHFGLILLLYLVFEATADFSSVDAGGTTLIRIPLVKANVPPRADPR
RQRSLAEEIDSKGDIVLHDIHQDAAYIGSIGIGTPPREFTVIFDTGSSDL
WIPSALCKVCGHRNKYNSDASSSFEQDGRSFQITYIGGPVTGYLAEDTVL
FAGYAVKNQSFAQITNPLGLGASYSGGGYDGVFGLGFDELSVTKSTTPFH
NLIEQQGEVLPQPIFAFFLANGDTGPSELTVGGTDPSHYEGDLHWMPLHD
PPGYWAVGLDSVYLGPRKLQSQAGAVVLDSGTSIMVGPKTDVDAIFEGLG
ATLVENLFTVNCSLKAAMPDLEFILDGQPYALSADDYLVQDRDICLVGLQ
GDDHAQAQWILGDMFLRKFYSAYDYQNRRAGLALAKTGR

mRNA from alignment at KK037248.1:98373..100200+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8212 ID=rna8212|Name=rna8212|organism=Nannochloropsis gaditana|type=mRNA|length=1828bp|location=Sequence derived from alignment at KK037248.1:98373..100200+ (Nannochloropsis gaditana)
CGTGCGAGAGATTGGTCGGTGCAGAGTCAAGACCCTTTGCCTATGATGAA
ACATTTGATATATGCATTCCAGATGCTTCTTTAAAATGGCAGTCGTGGGT
AGGATCTCCTTCTGGACGTGATACAAAGCAaaaccctccttctcacaaGC
AACCTCCTCTCACGCTCGTAAAGCAGTTTTCATAGCCAACAAGGCCCTCT
TGTGGCTATGAAGCAATCACATCATTTTGGACTGATTCTTTTGCTGTACC
TGGTATTTGAAGCGACTGCCGATTTCTCATCTGTTGATGCAGGGGGTACA
ACTCTGATACGCATTCCCCTCGTCAAAGCGAATGTGCCTCCACGTGCAGA
CCCCCGCCGGCAACGGTCATTAGCAGAAGAAATAGACAGCAAGGGAGACA
TTGTATTGCATGATATTCATCAAGACGCAGCCTACATCGGAAGCATCGGC
ATCGGAACCCCTCCCCGCGAATTCACTGTGATTTTCGACACGGGCAGCAG
TGATCTGTGGATTCCCTCGGCACTTTGCAAAGTATGTGGCCACCGCAACA
AATACAATTCGGATGCTTCATCTTCCTTCGAGCAAGACGGGCGTAGCTTC
CAAATCACGTATATCGGAGGCCCCGTGACGGGATACCTTGCCGAAGACAC
GGTGCTATTTGCCGGGTATGCTGTGAAAAACCAGTCATTCGCCCAGATTA
CAAACCCTCTGGGTTTGGGGGCCAGCTATTCAGGTGGAGGATACGATGGA
GTGTTTGGACTTGGCTTCGATGAGCTGTCGGTGACGAAATCCACGACCCC
TTTCCACAATTTGATCGAGCAGCAAGGCGAAGTACTCCCGCAACCGATTT
TCGCTTTCTTTCTGGCCAACGGAGATACGGGGCCAAGTGAGCTGACGGTG
GGCGGCACAGATCCCAGCCATTACGAGGGAGACCTGCATTGGATGCCCCT
CCACGATCCCCCGGGGTACTGGGCAGTGGGATTGGACAGTGTCTACCTGG
GCCCTCGAAAGCTGCAGAGCCAGGCTGGCGCCGTGGTCCTGGACTCGGGG
ACGTCCATTATGGTGGGGCCGAAAACTGACGTGGACGCTATATTCGAGGG
GCTGGGGGCCACGCTTGTGGAGAATCTTTTCACTGTGAATTGCAGTCTAA
AGGCGGCGATGCCGGACCTGGAGTTCATCCTGGACGGTCAGCCGTACGCC
CTGAGCGCCGACGACTACCTGGTGCAGGACCGGGACATCTGCCTCGTGGG
GCTGCAGGGAGACGATCATGCCCAGGCTCAGTGGATTCTCGGCGACATGT
TCTTGCGGAAGTTCTACTCGGCGTACGACTACCAGAACAGACGCGCCGGA
ttggccttggccaagacGGGGAGATGAAAGCACCAGTTGATGTACAGGTC
AGAGCGAGccatggggaaggaaaaaaaggaaataaAGTCTAGAATTGCAA
GCCATTCAGTTATGTGCGGATGGCACATCGAGTATAGAATCACAGGCGAG
GCCGTTCAGCACGGCACATCTTCCTTAAAGAGGGGATTGCGGTATTTCAC
AACAGATTGGTCTCAAGAAGGGTTTGAAGCAAAAGTAGCGCACACTTTCT
GAGCCATCAATGCCTTAGCCTCGATACAAATTTTCTTCCATTGTCCTTCC
GAGGTGTCCCCTGACGGAAACGGAAGCCAACGCGCGACAGGAACTTCTTC
GGATATTTTAGGAGCACATAGATAGCAGACTGATAGGATTTTATAAATCC
TCAGCCATAACATCCACCGAGGAAGCCCAAATGCGCGCCATGCAGAGACA
CGTGCCAGAGGCCCCCGGCCGGTCCACT

Coding sequence (CDS) from alignment at KK037248.1:98373..100200+

>rna8212 ID=rna8212|Name=rna8212|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at KK037248.1:98373..100200+ (Nannochloropsis gaditana)
ATGAAGCAATCACATCATTTTGGACTGATTCTTTTGCTGTACCTGGTATT
TGAAGCGACTGCCGATTTCTCATCTGTTGATGCAGGGGGTACAACTCTGA
TACGCATTCCCCTCGTCAAAGCGAATGTGCCTCCACGTGCAGACCCCCGC
CGGCAACGGTCATTAGCAGAAGAAATAGACAGCAAGGGAGACATTGTATT
GCATGATATTCATCAAGACGCAGCCTACATCGGAAGCATCGGCATCGGAA
CCCCTCCCCGCGAATTCACTGTGATTTTCGACACGGGCAGCAGTGATCTG
TGGATTCCCTCGGCACTTTGCAAAGTATGTGGCCACCGCAACAAATACAA
TTCGGATGCTTCATCTTCCTTCGAGCAAGACGGGCGTAGCTTCCAAATCA
CGTATATCGGAGGCCCCGTGACGGGATACCTTGCCGAAGACACGGTGCTA
TTTGCCGGGTATGCTGTGAAAAACCAGTCATTCGCCCAGATTACAAACCC
TCTGGGTTTGGGGGCCAGCTATTCAGGTGGAGGATACGATGGAGTGTTTG
GACTTGGCTTCGATGAGCTGTCGGTGACGAAATCCACGACCCCTTTCCAC
AATTTGATCGAGCAGCAAGGCGAAGTACTCCCGCAACCGATTTTCGCTTT
CTTTCTGGCCAACGGAGATACGGGGCCAAGTGAGCTGACGGTGGGCGGCA
CAGATCCCAGCCATTACGAGGGAGACCTGCATTGGATGCCCCTCCACGAT
CCCCCGGGGTACTGGGCAGTGGGATTGGACAGTGTCTACCTGGGCCCTCG
AAAGCTGCAGAGCCAGGCTGGCGCCGTGGTCCTGGACTCGGGGACGTCCA
TTATGGTGGGGCCGAAAACTGACGTGGACGCTATATTCGAGGGGCTGGGG
GCCACGCTTGTGGAGAATCTTTTCACTGTGAATTGCAGTCTAAAGGCGGC
GATGCCGGACCTGGAGTTCATCCTGGACGGTCAGCCGTACGCCCTGAGCG
CCGACGACTACCTGGTGCAGGACCGGGACATCTGCCTCGTGGGGCTGCAG
GGAGACGATCATGCCCAGGCTCAGTGGATTCTCGGCGACATGTTCTTGCG
GAAGTTCTACTCGGCGTACGACTACCAGAACAGACGCGCCGGAttggcct
tggccaagacGGGGAGATGA

Synonyms

Publications