rna821, rna821 (mRNA) Nannochloropsis gaditana

Overview
Namerna821
Unique Namerna821
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1576
Alignment locationCM002456.1:501197..502695 -

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Properties
Property NameValue
Producturoporphyrinogen decarboxylase
Orig transcript idgnl|cribi|Naga_100017g11.357.mrna
Orig protein idgnl|cribi|Naga_100017g11.357
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:501197..502695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g11gene786Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29859.1cds821Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna821rna821-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna821 ID=rna821|Name=rna821|organism=Nannochloropsis gaditana|type=mRNA|length=1576bp
GGCTCGGATTGATGAAAGCTTAGGGGGGAGGTCAACTATGTCGAAATAGA
GGCCTTTGACGGGCTTAGGGGGCCAAGGCCACCGTCTGGTTGCGGTTCAC
TCGGATTTTTTGCTGGAAATGGACACGGGTGCGCTATGGTCGCGACTGCC
TGATCTGGGACTACTTTTCCAACACAATAGCACCTTATCAACCCTTGTCT
TCTTGACAAAGTAAATGGCTTCCGCCCCACACAAAACCTTTGCCTTAGCT
GCGCATGACGAAGGAGGCGTTCTCTCTAAGTTTGAGATCGAGCGGAGGGC
CCTCGGCCCTAAAGATGTCAAGATTGCCATAAAATTTTGTGGGATGTGCC
ACAGTGATCTGCATCAAATCAAGGGAGAATGGGGCAACAGCAAATATCCC
ATGGTTCCGGGACACGAGATTGTCGGCCTCGTGGAGGCTGTCGGGACGGA
AGCGCAAAAATTCAAAGTCGGCGCCAAAGTCGGCGTGGGCGTCTTTGTCG
ACTCCTGTCGGGCCTGTGCGAACTGCAGACAGGGAGACGAGCAGTACTGC
ACAGGGAACGGAATTCTCAACTCAGCCGTGTTCACGTACAACCACACACT
TCCCGATGGCACGCTGGTGCAGGGAGGCTACGCGCAAACCGTCGTTGTGG
ACGAGGCCTACGTGTTGCGCATCCCAGACAACCTGGACCTGGCGGCGGCG
GCGCCCTTGCTGTGTGCAGGGATCACCGTGTGGTCTCCCTTCTTGCACTT
CGGGGTTCGAAGCCACCATACGATAGGGGTGGTGGGGCTTGGTGGGCTGG
GGCACATGGCCGTCAAGTTCGCGGTGGCGATGGGATGTGACGTGGCTGTG
ATCTCCCACAGCCCTGGAAAAGAGGCTCTTGCCAAAAAGCTGGGCGCGCA
CCATTTCATCGTGATATCGGACGAGGCAGCCAAATCCGCCCACGCCCGGA
CGATGGACTACATCGTCGACACGGTCAGCGCCCCGCACAAGCTGCAGGAC
TATCTGCCCTTTTTGAAGACGGGCGCGACCCTCTGCCTGGTAGGCATCCC
CACCAAGCCCTACGAGCTCCACGCCGGCGACGTCCTCATGCAGCGCCTCA
AGGTGGCCGGCTCCGTGATTGGGGGGATCCGGGAGACCCAGGAGATGTTG
GATTTCTGCGGGAGGCATGGGATCACGAGCATGATCGAGACGGTGCCGGC
GGCCTACGCGAACAAGGCGATGACTCGGCTCGAGCAGAACGACGTCAAGT
TCCGCTTCGTCTTGGACATCGGCGGCACGCTTTCCGCAAGCTCCCCCGAG
CTGGAGGGGGCCTAATCTGGGCAATCATAGGACGTGAAATTGGACGTGGT
GGGCCGTCCTCCTGACCGCATCCACGTGCGTAAAAATGACGAGTCTAAGA
AATGTCGAGTGCGAGTGAGAAGCTAGACGTAGGTGGGGGCGAGGTGGACC
GTGCTGGCGTTGGTCAGAGGGAGCGTGTGGGGAAAGAAAGGGAAGAGGCA
CAGAAAACGGTGGGTCCGAGACCGGAAGGCAACACTAGAAGTTCCCCGCG
CATATTAGCGACGTCGAAGTTTTTCC
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protein sequence of rna821

>rna821-protein ID=rna821-protein|Name=rna821|organism=Nannochloropsis gaditana|type=polypeptide|length=442bp
MSISPRPQGGSLLLAVSVLFLSNGLQAALAFSPILRSAVGHDKIQSFVVQ
ESRWSTLSPLFAGSIDGSKIVNPDHDILLRVARGEQTHRTPVWLMRQAGR
YMAAFREYSEKYPFRQRSETPSMAIELSMQPLEAFGVDGVIMFSDILTPL
PALGIEFDVISGKGPVIPNRIATAMDVDNVRRLDDPASSLPFVGETLRTL
KNEVAGRATLLGFVGAPFTLAAYTIEGGSSKNCLKTKRMMMYDPTLLHVY
LDKLATAIGDYACYQIENGAEVIQVFESWAHQLSPSQFLKYSKPYADKVT
TIVKERHPEVPIIFFGHGASSFLELQGDMAADMICLDWQVDMATARRTLG
AKPVSGNVDPTVLLGPPEGIVAAVDECVRKAGGGGHILNLGHGVIKTTPE
DAVRLFVDTAKSIELKAASRESGSDGPPPSSLVRPALAGAGA
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mRNA from alignment at CM002456.1:501197..502695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna821 ID=rna821|Name=rna821|organism=Nannochloropsis gaditana|type=mRNA|length=1499bp|location=Sequence derived from alignment at CM002456.1:501197..502695- (Nannochloropsis gaditana)
AGGAGCGTTGTTTTCCTACGCGGCCTATGCGATGCGACCTGAAGCAAGGC
AAACATCCTATGATGGTCTTATTCGCATCATTAATACCTCTCTCATTCGA
AGGCAGGTCGACTAGAAATGAGCATTTCACCACGGCCGCAGGGAGGGTCC
CTCCTGCTCGCCGTGTCCGTGCTTTTCCTGAGCAACGGTCTGCAAGCAGC
CCTTGCATTCTCTCCTATATTGCGAAGTGCCGTTGGCCACGACAAAATAC
AATCCTTTGTGGTGCAGGAATCCCGCTGGTCGACCTTATCTCCGCTCTTT
GCCGGGTCCATTGACGGCTCCAAAATCGTCAATCCTGATCACGACATCCT
GCTTCGCGTGGCTCGAGGGGAGCAGACCCATCGCACCCCCGTGTGGCTAA
TGCGTCAGGCTGGACGATATATGGCTGCTTTTCGAGAATACAGCGAAAAA
TATCCTTTCAGACAGCGTTCTGAGACCCCGTCTATGGCAATCGAGTTGTC
GATGCAACCTTTGGAGGCCTTCGGGGTTGACGGGGTCATCATGTTCTCAG
ACATCCTCACTCCCTTGCCAGCGTTGGGTATAGAGTTTGACGTGATCTCA
GGCAAAGGTCCTGTCATTCCTAATCGGATCGCAACAGCTATGGACGTGGA
CAACGTCCGGCGGCTGGATGATCCGGCTAGCAGTTTACCCTTTGTAGGGG
AGACGCTGCGCACGTTGAAAAACGAGGTGGCGGGAAGAGCCACGTTGCTG
GGTTTCGTAGGCGCACCTTTCACTTTAGCGGCGTACACCATTGAAGGTGG
CTCCAGCAAAAACTGTCTGAAGACGAAGCGAATGATGATGTACGACCCCA
CACTCTTGCACGTCTACTTGGACAAGCTTGCCACGGCCATCGGAGACTAC
GCTTGCTACCAGATCGAGAACGGCGCTGAAGTGATCCAAGTGTTCGAGTC
TTGGGCACACCAGCTGTCCCCCTCGCAGTTCCTGAAATACAGCAAGCCGT
ATGCTGACAAGGTCACCACCATCGTCAAAGAAAGACACCCGGAGGTACCC
ATCATCTTCTTCGGTCACGGGGCCAGCAGCTTCTTGGAGCTGCAGGGTGA
CATGGCGGCGGACATGATATGCCTTGACTGGCAAGTGGACATGGCCACAG
CGCGCAGGACGCTGGGTGCCAAGCCCGTCTCTGGAAATGTAGACCCGACC
GTGCTGTTAGGCCCCCCGGAGGGTATCGTGGCCGCGGTGGACGAGTGCGT
GCGGAAGGCGGGAGGAGGGGGCCACATTTTGAACCTGGGCCACGGGGTCA
TCAAGACGACGCCCGAGGACGCGGTGCGTCTCTTTGTCGACACGGCCAAG
AGCATCGAATTGAAGGCGGCCAGTAGGGAAAGCGGGAGTGATGGCCCCCC
ACCAAGTAGTTTGGTGAGGCCAGCATTGGCGGGAGCAGGGGCGTGATGAT
GTGCAGGCAAGAAGAACGAAACCAAAAAATACAACACGGAAAAACTTCG
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Coding sequence (CDS) from alignment at CM002456.1:501197..502695-

>rna821 ID=rna821|Name=rna821|organism=Nannochloropsis gaditana|type=CDS|length=1329bp|location=Sequence derived from alignment at CM002456.1:501197..502695- (Nannochloropsis gaditana)
ATGAGCATTTCACCACGGCCGCAGGGAGGGTCCCTCCTGCTCGCCGTGTC
CGTGCTTTTCCTGAGCAACGGTCTGCAAGCAGCCCTTGCATTCTCTCCTA
TATTGCGAAGTGCCGTTGGCCACGACAAAATACAATCCTTTGTGGTGCAG
GAATCCCGCTGGTCGACCTTATCTCCGCTCTTTGCCGGGTCCATTGACGG
CTCCAAAATCGTCAATCCTGATCACGACATCCTGCTTCGCGTGGCTCGAG
GGGAGCAGACCCATCGCACCCCCGTGTGGCTAATGCGTCAGGCTGGACGA
TATATGGCTGCTTTTCGAGAATACAGCGAAAAATATCCTTTCAGACAGCG
TTCTGAGACCCCGTCTATGGCAATCGAGTTGTCGATGCAACCTTTGGAGG
CCTTCGGGGTTGACGGGGTCATCATGTTCTCAGACATCCTCACTCCCTTG
CCAGCGTTGGGTATAGAGTTTGACGTGATCTCAGGCAAAGGTCCTGTCAT
TCCTAATCGGATCGCAACAGCTATGGACGTGGACAACGTCCGGCGGCTGG
ATGATCCGGCTAGCAGTTTACCCTTTGTAGGGGAGACGCTGCGCACGTTG
AAAAACGAGGTGGCGGGAAGAGCCACGTTGCTGGGTTTCGTAGGCGCACC
TTTCACTTTAGCGGCGTACACCATTGAAGGTGGCTCCAGCAAAAACTGTC
TGAAGACGAAGCGAATGATGATGTACGACCCCACACTCTTGCACGTCTAC
TTGGACAAGCTTGCCACGGCCATCGGAGACTACGCTTGCTACCAGATCGA
GAACGGCGCTGAAGTGATCCAAGTGTTCGAGTCTTGGGCACACCAGCTGT
CCCCCTCGCAGTTCCTGAAATACAGCAAGCCGTATGCTGACAAGGTCACC
ACCATCGTCAAAGAAAGACACCCGGAGGTACCCATCATCTTCTTCGGTCA
CGGGGCCAGCAGCTTCTTGGAGCTGCAGGGTGACATGGCGGCGGACATGA
TATGCCTTGACTGGCAAGTGGACATGGCCACAGCGCGCAGGACGCTGGGT
GCCAAGCCCGTCTCTGGAAATGTAGACCCGACCGTGCTGTTAGGCCCCCC
GGAGGGTATCGTGGCCGCGGTGGACGAGTGCGTGCGGAAGGCGGGAGGAG
GGGGCCACATTTTGAACCTGGGCCACGGGGTCATCAAGACGACGCCCGAG
GACGCGGTGCGTCTCTTTGTCGACACGGCCAAGAGCATCGAATTGAAGGC
GGCCAGTAGGGAAAGCGGGAGTGATGGCCCCCCACCAAGTAGTTTGGTGA
GGCCAGCATTGGCGGGAGCAGGGGCGTGA
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Synonyms
Publications