rna8204, rna8204 (mRNA) Nannochloropsis gaditana

Overview
Namerna8204
Unique Namerna8204
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2445
Alignment locationKK037248.1:83188..84417 +

Link to JBrowse

Properties
Property NameValue
Productmyo-inositol 2-dehydrogenase
Orig transcript idgnl|cribi|Naga_100011g17.3462.mrna
Orig protein idgnl|cribi|Naga_100011g17.3462
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:83188..84417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g17gene7947Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8204rna8204-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22462.1cds8180Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8204 ID=rna8204|Name=rna8204|organism=Nannochloropsis gaditana|type=mRNA|length=2445bp
ATGTTCGATGTGGAACTGGCCCTGGCGGAGGCGGGGAGCAAGAGTCACAC
AATTATACTCCGTCGGGACTATCAAGAGTTTCGGGCGCTGCATTTGGCCT
TGGATAATTTGATTACAAGCAGCAAGAAGGATGTCACCTTGCCAGCTTTG
CCACAATATATGGAGGGATCAACGGACGCCCAAATGGCTGAAGCGTTGAC
CACGTACCTGTACGACCTCATGGCCATCCCGGACGTGACTGCTTCCCGCC
AGTTCCTCTCTCTCCTCAACGACCACGACGGCGCTGGGGGTGCGGAGACC
TCCGGCCTGGCCCCTGAAAGCGCCGTGGACTTCTTATTGCAACCCTGCGC
TCCTACGTCTTTGTACGTTCCTCGACGGGCCAAGCATGAAGAAGACGTGG
AAGTTTCCGCCGGGTCGACCGTCTTGTGGCGCTTCTCTGTCGGGGACGGT
CTAGACATCTCCTTCAAGGGCACTTTTCGCCCCCATGCCGGCACCGCTGA
CACCTCCCCAACCGAGGATCTGACTCCCTTACCCGTGGAAATCGTCGTGG
AGGGCCGTTTTCCTCAGGCAGGAAGTGCTGTGCCCGCGCCTCTCAGCCCC
GACGCAGAGGCGGGACGGGCCGAGGATGTCCAGGGATGCTACTCGGTGCC
AGCGGAGTCCTTGGGGGGCGTCTGCTCCTTCTGCTGGGACAACAGCTACT
CCCGCCTACGCGGCAAACAGCAGCAAGGAGGGTGGGAAGGGCCACGGCGT
GGGCGGAGGGGGGGGGCCGCGAGGCCGTCGCAGGCGTGGGAGGCGTGGGA
AGGGCCGGAGTTCTCGCGAGTGGTGGGCCTGGTGGAGGAGCTGGAGGACG
AGGTAGCGCAGATGGCGGCCAAGAAGGAGCAGGCGGAGGCGGAGGCGGTG
ATTGCCCTGGCCAAGCAGCGTCGGTGGTCGATCGAGAAGGAGAAGTTCGA
GCGGCGGATGCTGGAGGCCCTGGCGAGGGGCGAGACCCTGGGGGAACAGG
TGAAGGCGCTGCGGGCGGAAAAGGCAGGCCTGGAGGCGGAGGTGGGGCGG
AAGGAGGAGGAAGCGGTGGCGCTTCGAGAGGCAAGGAAGCGGGCGGAGCG
AGAACGGGAGGTGCTGGCGGCAGAGAAGCAAGTGTGGACGCTGGCGCATT
CTGGGGTGCAGGCGGAGCTGACCAGCCTGACGGGGACCTTGGAGAGGGAG
CGAGGGGCCCACGAAGACACGCGCGGGGCCTGGAAGAAGGCCAAGGAGGC
GGCGCAGCGGGCCAAGGGGGAGGCCGAGGTGCTCCGAGCGCGGTTGGCGG
CACGTACGGACGAGCGGGCCCTGCAGACGGCGCAAGAGGAGCTGGGCAGT
GCCAGGGCGGAGGTGCGGGATCTGGGCGAGGCCTTGGAGGAGACGGCGGC
CGAGAACGAGACGCTCCGGGCCCAGATGAAACTGCTGGCGCGGCATGTGA
AACAGCAGAAACAAGAGATAGCCGAGCTTCGGGAGCGCATGGCGGTTCAG
GCTCGGATAGTGGCCCAACTGAAGGGGGAGAAGAGGCTGCTGGTGAAGGA
GATCAAGGCCCGCTCGGGGTCTGCTCCTTTTGCCGAGCTCAAGCCGGAGG
CAGCAGCCGTGCTCGACTGCTCGACGACGTCAGGGACTTTGCTGGAGGAG
TCTGTCGGGGAGGCGGGAGGACTGGAAGGAGTGACGGGGAGCCTTGAAGA
GGAGCCGAGGAAGGGGGGGGGGCTCGTGGAAGGGGAGGGTTCCGCACGCG
ATGGCGAGCTGTTGGGAAGCGCACTGCCATTGGCGTCATCGATGACGGAG
GCGTTGAACGATGAAGGCGGAGATAGGGTCCGGGGGAAGGAGGAGGCAGG
GGCGGGGGTGGTGGTCGGCGGGGACGAGGAGGAGAAGAAAGAGGACACGG
AGGGGAGAAAAGGAGAGGAGAATGAGGTAAGCGAGCATGAAGGCAGGCAG
CATGAGGAAATGACGGAAGGAAGAGGCGGGCAGCCAGCACGGTCGTTGTC
CCTCACCACTCTTTCCCCATGTCCCCTTCCCTCGGGCCAAGCACCTGCTG
CTTCGCCCACTGACGCTCTTTCCTCCTCGGATTCTGCACCGCCGCCGAAG
CCATGTTCGTCCCCCACGAAAGAGCAGAATGAATCATTCCCTATATTAAA
ATCTGTGGGTCACAGTGCGACTATCCTTTGTAGTCCTGAGCGCAGTAATC
GCAAGAAAGAAAGTAGCGCCAGTAGTACTCTAGATAAGGATGAGCGTTAC
ACTCGTCTTATAAGCCAGCTCCGAAATGTGACAGAGAGAAGAAAGCAGTT
GCTCCTGCTTTGTGAAGAAGATCCCCAGAATGAAAATATCAAGCAAATGG
TGGCAGATTTAGAAGGGGTGCTTGCTAACATTAAGACGAGAATGCGAGTT
ATTCTGGAGGCAGCTGGGGAATCAGGGAGTCAAAGAAGGGGATAA
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protein sequence of rna8204

>rna8204-protein ID=rna8204-protein|Name=rna8204|organism=Nannochloropsis gaditana|type=polypeptide|length=409bp
MCPRLSTHNVAYAVVTIFKCAFEHRNKSTRPKTKNKNAMTYARSSALILI
PALLLPVMPYAFFLRMSQSPLGVGVIGCGRIGQIHSNTLAFRTPGARLVA
ITDPFEDMGKKVLDQTGGIPSYHKNYLDLLDEEDIKAVVVASPTPYHVEQ
IMAAVERGKHVFCEKPISNDLATIDSCIEAAAKAGTKLILGFQRRFDANF
QAVKQQIVQGAIGKVRTIRIVSRDPAPPPADYLKTSGGIFLDMSSHDFDM
ARFLVGSDIEEVFVQGTAWGPEAAGAGDLDTQITLLRFENGVFGTLENSR
LCSFGYDQRVEVFGELGSLQGENRSPSTVTRSDAEGVTAGLPYSFFMDRY
GDAYVDIVRAFVREVSGDGGGGVEHLASAADGKATVMAGMAAKASVQGRR
LVKVSEMGR
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mRNA from alignment at KK037248.1:83188..84417+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8204 ID=rna8204|Name=rna8204|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp|location=Sequence derived from alignment at KK037248.1:83188..84417+ (Nannochloropsis gaditana)
ATGTGTCCCAGATTGTCTACTCATAATGTCGCTTACGCGGTTGTTACCAT
TTTTAAATGCGCATTTGAACACAGAAACAAGTCTACTCGCCCAAAGACGA
AGAACAAAAACGCTATGACCTACGCGCGTTCCTCTGCGCTAATCTTGATC
CccgcgcttctccttcccgtcaTGCCCTATGCCTTTTTTCTCCGTATGTC
CCAATCCCCTTTGGGTGTGGGTGTAATTGGCTGCGGACGTATCGGGCAGA
TCCACAGCAATACCTTGGCTTTCCGGACGCCTGGTGCACGACTCGTAGCG
ATCACAGACCCGTTTGAAGAcatggggaagaaggtctTAGACCAAACAGG
TGGAATCCCCTCCTACCATAAGAATTATTTAGATCTATTGGATGAGGAAG
ATATAAAGGCCGTGGTTGTGGCATCTCCTACCCCTTACCATGTGGAGCAA
ATCATGGCGGCAGTAGAGCGGGGCAAACACGTGTTCTGCGAGAAGCCCAT
CTCCAACGACTTGGCCACCATTGATTCTTGCATTGAGGCCGCGGCAAAGG
CTGGGACGAAGCTCATACTAGGATTTCAGCGGCGCTTCGATGCCAACTTT
CAAGCTGTGAAACAACAAATCGTGCAAGGGGCCATTGGCAAGGTCCGGAC
GATCCGTATTGTCAGCCGGgacccggcccctccccctgcagaTTACTTGA
AGACCAGTGGAGGCATATTCCTGGACATGAGCAGCCATGATTTTGACATG
GCTCGGTTTTTAGTGGGAAGCGATATCGAGGAGGTTTTTGTGCAAGGCAC
CGCTTGGGGGCCGGAAGCAGCGGGCGCAGGCGACCTGGACACTCAAATCA
CCTTGCTGCGCTTCGAGAACGGGGTGTTCGGGACCCTGGAGAACTCGCGT
TTGTGCTCTTTCGGATACGACCAGCGTGTGGAGGTGTTCGGAGAGCTGGG
TTCCTTGCAAGGAGAGAACAGGAGCCCGAGCACGGTGACCCGATCGGACG
CCGAGGGCGTGACTGCGGGACTGCCCTACTCGTTCTTCATGGACCGTTAC
GGCGACGCCTACGTAGACATTGTCAGGGCCTTCGTGCGGGAGGTGAgcgg
ggacggtgggggaggagtggagcACCTGGCAAGCGCCGCGGACGGGAAAG
CGACGGTCAtggcgggcatggcggccaaggcctcagTGCAGGGCCGGCGC
CTGGTCAAGGTCTCGGAAATGGGGCGTTAG
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Coding sequence (CDS) from alignment at KK037248.1:83188..84417+

>rna8204 ID=rna8204|Name=rna8204|organism=Nannochloropsis gaditana|type=CDS|length=1230bp|location=Sequence derived from alignment at KK037248.1:83188..84417+ (Nannochloropsis gaditana)
ATGTGTCCCAGATTGTCTACTCATAATGTCGCTTACGCGGTTGTTACCAT
TTTTAAATGCGCATTTGAACACAGAAACAAGTCTACTCGCCCAAAGACGA
AGAACAAAAACGCTATGACCTACGCGCGTTCCTCTGCGCTAATCTTGATC
CccgcgcttctccttcccgtcaTGCCCTATGCCTTTTTTCTCCGTATGTC
CCAATCCCCTTTGGGTGTGGGTGTAATTGGCTGCGGACGTATCGGGCAGA
TCCACAGCAATACCTTGGCTTTCCGGACGCCTGGTGCACGACTCGTAGCG
ATCACAGACCCGTTTGAAGAcatggggaagaaggtctTAGACCAAACAGG
TGGAATCCCCTCCTACCATAAGAATTATTTAGATCTATTGGATGAGGAAG
ATATAAAGGCCGTGGTTGTGGCATCTCCTACCCCTTACCATGTGGAGCAA
ATCATGGCGGCAGTAGAGCGGGGCAAACACGTGTTCTGCGAGAAGCCCAT
CTCCAACGACTTGGCCACCATTGATTCTTGCATTGAGGCCGCGGCAAAGG
CTGGGACGAAGCTCATACTAGGATTTCAGCGGCGCTTCGATGCCAACTTT
CAAGCTGTGAAACAACAAATCGTGCAAGGGGCCATTGGCAAGGTCCGGAC
GATCCGTATTGTCAGCCGGgacccggcccctccccctgcagaTTACTTGA
AGACCAGTGGAGGCATATTCCTGGACATGAGCAGCCATGATTTTGACATG
GCTCGGTTTTTAGTGGGAAGCGATATCGAGGAGGTTTTTGTGCAAGGCAC
CGCTTGGGGGCCGGAAGCAGCGGGCGCAGGCGACCTGGACACTCAAATCA
CCTTGCTGCGCTTCGAGAACGGGGTGTTCGGGACCCTGGAGAACTCGCGT
TTGTGCTCTTTCGGATACGACCAGCGTGTGGAGGTGTTCGGAGAGCTGGG
TTCCTTGCAAGGAGAGAACAGGAGCCCGAGCACGGTGACCCGATCGGACG
CCGAGGGCGTGACTGCGGGACTGCCCTACTCGTTCTTCATGGACCGTTAC
GGCGACGCCTACGTAGACATTGTCAGGGCCTTCGTGCGGGAGGTGAgcgg
ggacggtgggggaggagtggagcACCTGGCAAGCGCCGCGGACGGGAAAG
CGACGGTCAtggcgggcatggcggccaaggcctcagTGCAGGGCCGGCGC
CTGGTCAAGGTCTCGGAAATGGGGCGTTAG
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Synonyms
Publications