rna820, rna820 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna820
Unique Name	rna820
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1806
Alignment location	CM002456.1:499248..501208 +

Link to JBrowse

Properties


Property Name	Value
Product	cinnamyl alcohol dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100017g10.283.mrna
Orig protein id	gnl\|cribi\|Naga_100017g10.283
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:499248..501208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g10	gene785	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna820	rna820-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29785.1	cds820	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:499248..501208+
coding sequence from alignment at CM002456.1:499248..501208+

mRNA sequence

>rna820 ID=rna820|Name=rna820|organism=Nannochloropsis gaditana|type=mRNA|length=1806bp
GGCTCGGATTGATGAAAGCTTAGGGGGGAGGTCAACTATGTCGAAATAGA
GGCCTTTGACGGGCTTAGGGGGCCAAGGCCACCGTCTGGTTGCGGTTCAC
TCGGATTTTTTGCTGGAAATGGACACGGGTGCGCTATGGTCGCGACTGCC
TGATCTGGGACTACTTTTGTAAGGTGGAGTCTGTAGGCGCACCGACGTGG
TCCCCGCCCACTGCCTGCCTGCTCGACCTGTGCGGATGTGGAGGGCAAAT
CACTGACGCATCTTGAAACTCGAAAGTTTGCGGAAAATTGTGCATGCGCA
GTGTGTGCGTGGTGTTCTCGTTTAAGGACAAAGAGAATCCTTTATGGATT
CGCGAAAGGAGTACTCATATTCCCTTTTCTCTCCGCTTGTTTCACAAGCC
AACACAATAGCACCTTATCAACCCTTGTCTTCTTGACAAAGTAAATGGCT
TCCGCCCCACACAAAACCTTTGCCTTAGCTGCGCATGACGAAGGAGGCGT
TCTCTCTAAGTTTGAGATCGAGCGGAGGGCCCTCGGCCCTAAAGATGTCA
AGATTGCCATAAAATTTTGTGGGATGTGCCACAGTGATCTGCATCAAATC
AAGGGAGAATGGGGCAACAGCAAATATCCCATGGTTCCGGGACACGAGAT
TGTCGGCCTCGTGGAGGCTGTCGGGACGGAAGCGCAAAAATTCAAAGTCG
GCGCCAAAGTCGGCGTGGGCGTCTTTGTCGACTCCTGTCGGGCCTGTGCG
AACTGCAGACAGGGAGACGAGCAGTACTGCACAGGGAACGGAATTCTCAA
CTCAGCCGTGTTCACGTACAACCACACACTTCCCGATGGCACGCTGGTGC
AGGGAGGCTACGCGCAAACCGTCGTTGTGGACGAGGCCTACGTGTTGCGC
ATCCCAGACAACCTGGACCTGGCGGCGGCGGCGCCCTTGCTGTGTGCAGG
GATCACCGTGTGGTCTCCCTTCTTGCACTTCGGGGTTCGAAGCCACCATA
CGATAGGGGTGGTGGGGCTTGGTGGGCTGGGGCACATGGCCGTCAAGTTC
GCGGTGGCGATGGGATGTGACGTGGCTGTGATCTCCCACAGCCCTGGAAA
AGAGGCTCTTGCCAAAAAGCTGGGCGCGCACCATTTCATCGTGATATCGG
ACGAGGCAGCCAAATCCGCCCACGCCCGGACGATGGACTACATCGTCGAC
ACGGTCAGCGCCCCGCACAAGCTGCAGGACTATCTGCCCTTTTTGAAGAC
GGGCGCGACCCTCTGCCTGGTAGGCATCCCCACCAAGCCCTACGAGCTCC
ACGCCGGCGACGTCCTCATGCAGCGCCTCAAGGTGGCCGGCTCCGTGATT
GGGGGGATCCGGGAGACCCAGGAGATGTTGGATTTCTGCGGGAGGCATGG
GATCACGAGCATGATCGAGACGGTGCCGGCGGCCTACGCGAACAAGGCGA
TGACTCGGCTCGAGCAGAACGACGTCAAGTTCCGCTTCGTCTTGGACATC
GGCGGCACGCTTTCCGCAAGCTCCCCCGAGCTGGAGGGGGCCTAATCTGG
GCAATCATAGGACGTGAAATTGGACGTGGTGGGCCGTCCTCCTGACCGCA
TCCACGTGCGTAAAAATGACGAGTCTAAGAAATGTCGAGTGCGAGTGAGA
AGCTAGACGTAGGTGGGGGCGAGGTGGACCGTGCTGGCGTTGGTCAGAGG
GAGCGTGTGGGGAAAGAAAGGGAAGAGGCACAGAAAACGGTGGGTCCGAG
ACCGGAAGGCAACACTAGAAGTTCCCCGCGCATATTAGCGACGTCGAAGT
TTTTCC

protein sequence of rna820

>rna820-protein ID=rna820-protein|Name=rna820|organism=Nannochloropsis gaditana|type=polypeptide|length=366bp
MASAPHKTFALAAHDEGGVLSKFEIERRALGPKDVKIAIKFCGMCHSDLH
QIKGEWGNSKYPMVPGHEIVGLVEAVGTEAQKFKVGAKVGVGVFVDSCRA
CANCRQGDEQYCTGNGILNSAVFTYNHTLPDGTLVQGGYAQTVVVDEAYV
LRIPDNLDLAAAAPLLCAGITVWSPFLHFGVRSHHTIGVVGLGGLGHMAV
KFAVAMGCDVAVISHSPGKEALAKKLGAHHFIVISDEAAKSAHARTMDYI
VDTVSAPHKLQDYLPFLKTGATLCLVGIPTKPYELHAGDVLMQRLKVAGS
VIGGIRETQEMLDFCGRHGITSMIETVPAAYANKAMTRLEQNDVKFRFVL
DIGGTLSASSPELEGA

mRNA from alignment at CM002456.1:499248..501208+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna820 ID=rna820|Name=rna820|organism=Nannochloropsis gaditana|type=mRNA|length=1961bp|location=Sequence derived from alignment at CM002456.1:499248..501208+ (Nannochloropsis gaditana)
GGCTCGGATTGATGAAAGCTTAGGGGGGAGGTCAACTATGTCGAAATAGA
GGCCTTTGACGGGCTTAGGGGGCCAAGGCCACCGTCTGGTTGCGGTTCAC
TCGGATTTTTTGCTGGAAATGGACACGGGTGCGCTATGGTCGCGACTGCC
TGATCTGGGACTACTTTTGTAAGGTGGAGTCTGTAGGCGCACCGACGTGG
TCCCCGCCCACTGCCTGCCTGCTCGACCTGTGCGGATGTGGAGGGCAAAT
CACTGACGCATCTTGAAACTCGAAAGTTTGCGGAAAATTGTGCATGCGCA
GTGTGTGCGTGGTGTTCTCGTTTAAGGACAAAGAGAATCCTTTATGGATT
CGCGAAAGGAGTACTCAtattcccttttctctccgcTTGTTTCACAAGCC
AACACAATAGCACCTTATCAACCCTTGTCTTCTTGACAAAGTAAATGGCT
TCCGCCCCACACAAAACCTTTGCCTTAGCTGCGCATGACGAAGGAGGCGT
TCTCTCTAAGTTTGAGATCGAGCGGAGGGCCCTCGGCCCTAAAGATGTCA
AGATTGCCATAAAATTTTGTGGGATGTGCCACAGTGATCTGCATCAAATC
AAGGGAGAATGGGGCAACAGCAAATATCCCATGGTTCCGGGACACGAGAT
TGTCGGCCTCGTGGAGGCTGTCGGGACGGAAGCGCAAAAATTCAAAGTCG
GCGCCAAAGTCGGCGTGGGCGTCTTTGTCGACTCCTGTCGGGCCTGTGCG
AACTGCAGACAGGGAGACGAGCAGTACTGCACAGGGAACGGAATTCTCAA
CTCAGCCGTGTTCACGTACAACCACACACTTCCCGATGGCACGCTGGTGC
AGGGAGGCTACGCGCAAACCGTCGTTGTGGACGAGGCCTACGTGTTGCGC
ATCCCAGACAACCTGgacctggcggcggcggcgccctTGCTGTGTGCAGG
GATCACCGTGTGGTCTCCCTTCTTGCACTTCGGGGTTCGAAGCCACCATA
CGATAGGGGTGGTGGGGCTTGGTGGGCTGGGGCACATGGCCGTCAAGTTC
GCGGTGGCGATGGGATGTGACGTGGCTGTGATCTCCCACAGCCCTGGAAA
AGAGGCTCTTGCCAAAAAGCTGGGCGCGCACCATTTCATCGTGATATCGG
ACGAGGCAGCCAAATCCGCCCACGCCCGGACGATGGACTACATCGTCGAC
ACGGTCAGCGCCCCGCACAAGCTGCAGGACTATCTGCCCTTTTTGAAGAC
GGGCGCGACCCTCTGCCTGGTAGGCATCCCCACCAAGCCCTACGAGCTCC
ACGCCGGCGACGTCCTCATGCAGCGCCTCAAGGTGGCCGGCTCCGTGATT
GGGGGGATCCGGGAGACCCAGGAGATGTTGGATTTCTGCGGGAGGCATGG
GATCACGAGCATGATCGAGACGGTGCCGGCGGCCTACGCGAACAAGGCGA
TGACTCGGCTCGAGCAGAACGACGTCAAGTTCCGCTTCGTCTGTGAGTAC
TGGTTTGTGGTGGGGAACAGAGGGGACTGGTCGTAGGCATGACTGTAGAG
GGCTTAGAGGGCTTACCAAAACGTTTGCGACACCGTTTTCATTGCCGAGC
ATCTCATTTCGCTCGATCCGGCCCTTTCTCTGACGTCACATCTACAGTGG
ACATCGGCGGCACGCTTTCCGCAAGCTCCcccgagctggagggggcCTAA
TCTGGGCAATCATAGGACGTGAAATTGGACGTGGTGGGCCGTCCTCCTGA
CCGCATCCACGTGCGTAAAAATGACGAGTCTAAGAAATGTCGAGTGCGAG
TGAGAAGCTAGACGTAGGTGGGGGCGAGGTGGACCGTGCTGGCGTTGGTC
AGAGGGAGCGTgtggggaaagaaagggaagaggcacaGAAAACGGTGGGT
CCGAGACCGGAAGGCAACACTAGAAGTTCCCCGCGCATATTAGCGACGTC
GAAGTTTTTCC

Coding sequence (CDS) from alignment at CM002456.1:499248..501208+

>rna820 ID=rna820|Name=rna820|organism=Nannochloropsis gaditana|type=CDS|length=2202bp|location=Sequence derived from alignment at CM002456.1:499248..501208+ (Nannochloropsis gaditana)
ATGGCTTCCGCCCCACACAAAACCTTTGCCTTAGCTGCGCATGACGAAGG
AGGCGTTCTCTCTAAGTTTGAGATCGAGCGGAGGGCCCTCGGCCCTAAAG
ATGTCAAGATTGCCATAAAATTTTGTGGGATGTGCCACAGTGATCTGCAT
CAAATCAAGGGAGAATGGGGCAACAGCAAATATCCCATGGTTCCGGGACA
CGAGATTGTCGGCCTCGTGGAGGCTGTCGGGACGGAAGCGCAAAAATTCA
AAGTCGGCGCCAAAGTCGGCGTGGGCGTCTTTGTCGACTCCTGTCGGGCC
TGTGCGAACTGCAGACAGGGAGACGAGCAGTACTGCACAGGGAACGGAAT
TCTCAACTCAGCCGTGTTCACGTACAACCACACACTTCCCGATGGCACGC
TGGTGCAGGGAGGCTACGCGCAAACCGTCGTTGTGGACGAGGCCTACGTG
TTGCGCATCCCAGACAACCTGgacctggcggcggcggcgccctTGCTGTG
TGCAGGGATCACCGTGTGGTCTCCCTTCTTGCACTTCGGGGTTCGAAGCC
ACCATACGATAGGGGTGGTGGGGCTTGGTGGGCTGGGGCACATGGCCGTC
AAGTTCGCGGTGGCGATGGGATGTGACGTGGCTGTGATCTCCCACAGCCC
TGGAAAAGAGGCTCTTGCCAAAAAGCTGGGCGCGCACCATTTCATCGTGA
TATCGGACGAGGCAGCCAAATCCGCCCACGCCCGGACGATGGACTACATC
GTCGACACGGTCAGCGCCCCGCACAAGCTGCAGGACTATCTGCCCTTTTT
GAAGACGGGCGCGACCCTCTGCCTGGTAGGCATCCCCACCAAGCCCTACG
AGCTCCACGCCGGCGACGTCCTCATGCAGCGCCTCAAGGTGGCCGGCTCC
GTGATTGGGGGGATCCGGGAGACCCAGGAGATGTTGGATTTCTGCGGGAG
GCATGGGATCACGAGCATGATCGAGACGGTGCCGGCGGCCTACGCGAACA
AGGCGATGACTCGGCTCGAGCAGAACGACGTCAAGTTCCGCTTCGTCTTG
GACATCGGCGGCACGCTTTCCGCAAGCTCCcccgagctggagggggcCTA
AATGGCTTCCGCCCCACACAAAACCTTTGCCTTAGCTGCGCATGACGAAG
GAGGCGTTCTCTCTAAGTTTGAGATCGAGCGGAGGGCCCTCGGCCCTAAA
GATGTCAAGATTGCCATAAAATTTTGTGGGATGTGCCACAGTGATCTGCA
TCAAATCAAGGGAGAATGGGGCAACAGCAAATATCCCATGGTTCCGGGAC
ACGAGATTGTCGGCCTCGTGGAGGCTGTCGGGACGGAAGCGCAAAAATTC
AAAGTCGGCGCCAAAGTCGGCGTGGGCGTCTTTGTCGACTCCTGTCGGGC
CTGTGCGAACTGCAGACAGGGAGACGAGCAGTACTGCACAGGGAACGGAA
TTCTCAACTCAGCCGTGTTCACGTACAACCACACACTTCCCGATGGCACG
CTGGTGCAGGGAGGCTACGCGCAAACCGTCGTTGTGGACGAGGCCTACGT
GTTGCGCATCCCAGACAACCTGgacctggcggcggcggcgccctTGCTGT
GTGCAGGGATCACCGTGTGGTCTCCCTTCTTGCACTTCGGGGTTCGAAGC
CACCATACGATAGGGGTGGTGGGGCTTGGTGGGCTGGGGCACATGGCCGT
CAAGTTCGCGGTGGCGATGGGATGTGACGTGGCTGTGATCTCCCACAGCC
CTGGAAAAGAGGCTCTTGCCAAAAAGCTGGGCGCGCACCATTTCATCGTG
ATATCGGACGAGGCAGCCAAATCCGCCCACGCCCGGACGATGGACTACAT
CGTCGACACGGTCAGCGCCCCGCACAAGCTGCAGGACTATCTGCCCTTTT
TGAAGACGGGCGCGACCCTCTGCCTGGTAGGCATCCCCACCAAGCCCTAC
GAGCTCCACGCCGGCGACGTCCTCATGCAGCGCCTCAAGGTGGCCGGCTC
CGTGATTGGGGGGATCCGGGAGACCCAGGAGATGTTGGATTTCTGCGGGA
GGCATGGGATCACGAGCATGATCGAGACGGTGCCGGCGGCCTACGCGAAC
AAGGCGATGACTCGGCTCGAGCAGAACGACGTCAAGTTCCGCTTCGTCTT
GGACATCGGCGGCACGCTTTCCGCAAGCTCCcccgagctggagggggcCT
AA

Synonyms

Publications