rna8197, rna8197 (mRNA) Nannochloropsis gaditana

Overview
Namerna8197
Unique Namerna8197
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1750
Alignment locationKK037248.1:67243..68294 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100011g10.3477.mrna
Orig protein idgnl|cribi|Naga_100011g10.3477
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:67243..68294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g10gene7940Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8197rna8197-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22477.1cds8173Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8197 ID=rna8197|Name=rna8197|organism=Nannochloropsis gaditana|type=mRNA|length=1750bp
CGCAGCCATTGCCGCCACTGCCAGATCATCAACCTCCTCCTCCTCCTCCT
CCGCCTCCCCCTCACTATCGTCCTCTTCTCGTTCCTCTCCCCCCTCATCG
TCCTCCTCTTCATCCTCATTCTCCTCGTCACTGCTGCTATTCACCCGCTC
TTCCTCCATTCCATTTCTAGCCTCCTCCGTCTCGTCATTGTCTCTGACGT
TGTTGCCATGAATGCTGGACATAGCAATGGGCGTCTTTTGTTCGTCTCTT
CGTGTGCAGGCGGTACCCTTAATGCTCTCCCCTCGTGCCTCCCTAGGACC
CTTCGAGTCGTCCCCCGCCATCGTCAAGCCCTTCCCCTGCCCCGTTTCCG
TGCACTCGTTTCCTTGCCCGCAAACATCAGCCACTACATTCTCCTCCTGC
ATGAATGTCTTGAGGATAGCAAGATGATGTGTTGCTTGACGAATGAGTGC
ATGGAATTCCGTTTCAAAAAGCAAATTTAGAGACGTAGTATCTTGAGCGA
CCTCCCGGTGGGGCGTACTACTACTAGTAGTACTAGTAGAAACAACCTCT
TTCGCTTACTGTCAAGTCCCTCAAACACATGCGCAGGTGGCGTGCAAACA
TAACAAATCGAAATAGTGGACATTGCTCAGGAAGGCGAATGTCATGTTCT
TTGCAGCAAGTCAGTGCCGGTTCACCCGACGGTCCATGTAAAGTCATTAC
CAAACGGAAGCGTCAAAGGTCTTCAGGGGCGGACGCGCAAAAATGCTTCC
ACGACTTATGCATCGATATTCCCCACCACAATACCACTGTGGAGCACGTC
CGAGAGGCTACACGTCGCCTTGGCCACCTCGGCTACGCCTGTGTGGCTTT
CAATGAAACTGTGGTCGGTCGCGACGGCGTCCGGGGGCTCGACCGTCCCG
CCTCCCTGAAAACTCGGAGGCCCCTCTGGCTGGCCGCTCGGGGAGGGCTT
GCCGACAAGCCTGAGGTACGCTTGCGTAGGGTCACGGTCGTCGTGCACGA
CAAAGGAGAAGCACAATTTTTGTGCGGAGCCATCCGCAGTGTAAAATGGG
CGGATCTGGTGGCAGCGCGTCCTACCTCAGACCAAGCTTTGCAGCTTTTG
TGCGAGGCCGGAGACGTGGACATAATATCTCTGGATATAAGCGCTCGGAT
GGGGTTCTCCTTGAGCACATCTCAAGCGGATGCCGCGCGAGCCCGTGGGA
TCGCCTTTGAAGTGCAGTACGCGGGGTTGATATCGGAGGAGAACTTGGTG
AAACGGCAACAACTCATGGCGAACACGAGCGGTGTGCTGGGAGCTACTCG
AGGCAGGGGGGTCGTATGGAGCAGCGGGAGCAGCGCGAGGGCGGCCTGGG
ACACGCTTCGTGGGCCGTACGACGTGATGAACTTGGCGGTGGTTTTGGGG
TTGAGGGAGGAGCCGGCGCTCAGGTCGTTGACAGGCTCATGCCAGGAGGC
GCGTGGACACGCCCAGGCGCGGCGCTTGGAGTGGTTGCCCGCCGAGGTGA
AGTGGGCAGGAGGTAGCGACGGGGGAGGGAGTGAAGGGAAAGTGGGGAAG
GAGGGGGAAGTGGCGGGAGAGGGGGAAGAGGAGGGGGAGGAGGAGGAGGG
GGAGGAGGAGAGGGAGATTGGCAGGTGCTGACGGGGTACGAGAGCATTTG
AGGATCTTGAAGGCGTGATCTTGAAGGCGTGAGGAAGCGCCAATGAAAGT
GGGGGACGTCGGTCAAAACCTTAAAACCGAAGCATCTAAAACGCGTACGC
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protein sequence of rna8197

>rna8197-protein ID=rna8197-protein|Name=rna8197|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MGGARTGRFGLGGVGACRIRAARLATPLPTPLLSATGSRLAGICSSTCHP
TILTSHRQRNMRRWRPKRPPFKSSIPTSRPVPPTICRYRTTASLFNTIIT
PNSSNNTTDSSSSSSNSNNNNSIDKSRHPSRPHPPRSRMGRKTGSKMVSA
GQDSKACGIGY
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mRNA from alignment at KK037248.1:67243..68294+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8197 ID=rna8197|Name=rna8197|organism=Nannochloropsis gaditana|type=mRNA|length=1052bp|location=Sequence derived from alignment at KK037248.1:67243..68294+ (Nannochloropsis gaditana)
aggacgaggagcgggGACTTATCACCCCACCCACTACCAGCAGTACCGGC
ACGTGTATTCGCCCCCCGAGTGGGCACCACACGCCCCTGGTAGTCCCGGA
GGCCTGGAGAGGGCGGCTCCGACCCTCGCGACGCCTGTCGCAGGgacccc
ctgtccctcctcccgcccgccccctcccctagGCTCCTCGCTCGGGCAGT
CTCATCCCGcccccagccctccttcgccagccccgcccctcttcctggac
tcgtccctccctcactccttccaaccgcccctccgcccatctCCCCGTCC
GAGACACCCCCAGCAAcctccctcggcctccttcccccccatccccctct
atTCCTACCCTGCCCAGCcctcaccgccgccaccgccccgcaCTGCGGGC
AGTCCTGGCGCCTCAAGACATGGGTGGGGCGCGGACGGGGCGTTTCGGCC
TCGGAGGGGTGGGAGCTTGCCGTATCCGGGCAGCCCGGCTggccacgccc
ctccctacccccctccTGTCAGCCACGGGCAGCAGGCTAGCTGGCATTTG
CAGCAGCACCTGCCACCCCACCATCCTCACCAGTCACCGTCAGCGCAATA
TGCGGCGATGGCGCCCCAAGAGGCCGCCTTTCAAGTCCAGCATCCCTACC
AGCCGCCCGGTCCCTCCAACTATATGCCGGTACCGCACAACGGCCTCTTT
GTTCAACACAATCATCACccccaacagcagcaacaacaccaccgacagca
gcagcagcagcagcaacagcaacaacaacaacagcatcGACAAGAGCAGG
CACCCTAGCcgtcctcacccccctcgttcccgcATGGGCCGGAAGACAGG
ATCCAAGATGGTATCGGCGGGGCAGGACTCGAAGGCATGCGGGATAGGCT
ACTGAGACAAAAGCACAGATCATGCAGGCGGTGGGCTGGCGGgtgtgggg
gaagggcggggggggggatgcccCGGTGGGACGGCGAATTGAGGGATGCA
GGGGGTGAGAGCGAGACCTTCTAATCATACAGAGAAGTTCCTCCTCGTAC
GT
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Coding sequence (CDS) from alignment at KK037248.1:67243..68294+

>rna8197 ID=rna8197|Name=rna8197|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at KK037248.1:67243..68294+ (Nannochloropsis gaditana)
ATGGGTGGGGCGCGGACGGGGCGTTTCGGCCTCGGAGGGGTGGGAGCTTG
CCGTATCCGGGCAGCCCGGCTggccacgcccctccctacccccctccTGT
CAGCCACGGGCAGCAGGCTAGCTGGCATTTGCAGCAGCACCTGCCACCCC
ACCATCCTCACCAGTCACCGTCAGCGCAATATGCGGCGATGGCGCCCCAA
GAGGCCGCCTTTCAAGTCCAGCATCCCTACCAGCCGCCCGGTCCCTCCAA
CTATATGCCGGTACCGCACAACGGCCTCTTTGTTCAACACAATCATCACc
cccaacagcagcaacaacaccaccgacagcagcagcagcagcagcaacag
caacaacaacaacagcatcGACAAGAGCAGGCACCCTAGCcgtcctcacc
cccctcgttcccgcATGGGCCGGAAGACAGGATCCAAGATGGTATCGGCG
GGGCAGGACTCGAAGGCATGCGGGATAGGCTACTGA
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Synonyms
Publications