rna8189, rna8189 (mRNA) Nannochloropsis gaditana

Overview
Namerna8189
Unique Namerna8189
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length465
Alignment locationKK037248.1:50439..51995 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF1499
Orig transcript idgnl|cribi|Naga_100011g2.3476.mrna
Orig protein idgnl|cribi|Naga_100011g2.3476
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:50439..51995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g2gene7932Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8189rna8189-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22476.1cds8165Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8189 ID=rna8189|Name=rna8189|organism=Nannochloropsis gaditana|type=mRNA|length=465bp
ATGATGCGACCTCTCTGCCTCTGGACGGTTGCCATGTTGGCTGCGTCTGC
TACGGCGTTTATCCCGCACACTGCCTTTCGTCCCAGTAGCCCTGTGGCGA
CAAGGAGGTGTAGCAGGGCTGTAAGCCGTGGCACGGGAGTGAGCATGATG
TCTGGACGCCGGCCTTTCATCGCGGGTAACTGGAAAGAGAACCCTGATAC
TTTGGAAGCCGCGATTGACCTGGCCAAAGCGGTATCCACCGCCTCCTCCT
CCGCCAGCAATGTAGACGTGGCGGTCGTGGTGCCCTTCCCCTTCCTGGTG
CCGGTCAAGGAGACCCTCAAAGGCAGCAACGTGTTGATCGGCGCGCAAGA
CCTTCCGTGGGGGCCCAGTGGGTCCTTTGCGGGCACTCGGAGCGCCGGGC
ACTCTTCGGCGACACGGACGAAACCGTCAATGCCAAGCTCAAGAAGGTGC
TGGCTGCGGGCTTGA
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protein sequence of rna8189

>rna8189-protein ID=rna8189-protein|Name=rna8189|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MPSSSPARRAGSGRNGSGNSPSGAKAGLGGGEWDFAVRPGKYTELTGTGR
LGGSSGGAYGLERSDVNAGSPLRTNVGSRGLSINLFASNASSALGEEDSS
VDIPSSYMGDDSTVSSWPTSPRNSLDQRTCCNLISYRYYFITTLLVASVL
FVWASVLGFVWGVLLSLGAIIAHLAYFRLLLRGVQPPVGVANTRKQRCLH
YTVLLLSYVIMIYMLIRLATARNTYIRDHVFPSNCYPNALGTVPHACVRV
TERPMEGEDWSHGLSAPTIFTPEVDSVVRLVDAWTRKQFQTKVVGRRREA
GKESVHLVAVTGFWGFVDDVAVEVACVGRGGAGEGGNGTVVVRVQSEQRF
GTLDGGKNKDRVKSLLSFLERQAGGLPVGACSPTPPR
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mRNA from alignment at KK037248.1:50439..51995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8189 ID=rna8189|Name=rna8189|organism=Nannochloropsis gaditana|type=mRNA|length=1557bp|location=Sequence derived from alignment at KK037248.1:50439..51995+ (Nannochloropsis gaditana)
ATTTACAGTctaagaaaaagaggaggtaCTCCATTCGAAGCCGGAGACAA
TGCCCTCATCATCTCCCGCTCGGAGAGCGGGAAGTGGTCGCAATGGAAGT
GGCAATAGTCCCAGTGGCGCAAAGGCAGGtctggggggaggcgagTGGGA
TTTCGCCGTCCGCCCTGGGAAGTACACAGAGCTCACAGGGACAGGCCGCC
TGGGTGGGAGTAGTGGTGGGGCCTATGGCTTGGAACGCAGCGACGTAAAT
GCCGGATCACCGCTCCGAACGAACGTTGGGAGTCGGGGCTTAAGTATCAA
TTTGTTCGCGTCGAACGCCTCATCGGCCCTCGGTGAGGAGGATAGCAGTG
TCGAcatcccctcttcctacATGGGAGATGACTCAaccgtctcctcctgg
cccACCTCGCCACGGAATAGCCTGGATCAACGGACCTGCTGCAACCTCAT
CTCGTACCGGTATTACTTCATCACCACCCTGCTCGTGGCGTCGGTCCTGT
TCGTCTGGGCCTCTGTCCTGGGCTTTGTCTGGGGCGTCTTGCTATCGCTC
GGGGCCATCATCGCCCACCTTGCCTacttccgtctcctcctccgcggcgt
CCAACCGCCTGTAGGGGTGGCGAACACCAGAAAACAGCGATGTTTGCATT
ACACCGTGCTGCTATTGTCCTATGTGATAATGATCTACATGCTCATTCGC
CTGGCGACGGCTAGAAATACCTACATTCGAGACCACGTATTTCCCTCAAA
TTGCTACCCAAATGCGCTGGGCACTGTGCCTCATGCGTGTGTTCGTGTGA
CGGAGCGTCcaatggaaggagaagactgGTCTCACGGCCTGAGCGCTCCG
ACCATTTTCACGCCGGAGGTCGACAGCGTCGTGCGCCTTGTCGACgcctg
gacaaggaagcAATTCCAGACAAaggtggtgggaaggaggagggaggcag
ggaaggagagcgtgCACCTGGTGGCAGTGACAGGCTTCTGGGGCTTTGTG
GACGAcgtggccgtggaggtggcCTGCGTcggaaggggcggggccgggga
gggagggaatggaacgGTCGTCGTGCGTGTGCAAAGCGAGCAGCGGTTCG
GGACCCTTGACGGGGGAAAGAACAAGGATCGGGTCAAGTCTCTGCTAAGC
TTCTTGGAGAGGCAGGCTGGAGGCCTGCCCGTGGGGGCGTgctcccccac
gcctccccgGTAGGAGCATGCCGCACTACCGCGATGTATACTAGGTAAAG
TAGAAAGTCGGCCTACCAGAAAACACTTATCGCCAAGGATGTAATAGGTT
TATGCTCAAAGCAATGTGGCCGCAAAAAGGGCTTTGTAAAGTATCCGTAA
ACAAGTGGAGGGCGACTTTGGAATGAGAAGGGGTGctaggaaagaaaaga
atgcGACGGAGCTGCCTTGCAGGATGAGACACCGCATTTGGAGCTGAGAC
GAGTGTCTCGAAGTAATTTTGTGTGTATGATATGTAAGATGATATGACTG
GTACCCGAAGCATTGATGTATGGGTTCAGAAAAAGTAAATCAATGACGCA
TTTAGGA
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Coding sequence (CDS) from alignment at KK037248.1:50439..51995+

>rna8189 ID=rna8189|Name=rna8189|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at KK037248.1:50439..51995+ (Nannochloropsis gaditana)
ATGCCCTCATCATCTCCCGCTCGGAGAGCGGGAAGTGGTCGCAATGGAAG
TGGCAATAGTCCCAGTGGCGCAAAGGCAGGtctggggggaggcgagTGGG
ATTTCGCCGTCCGCCCTGGGAAGTACACAGAGCTCACAGGGACAGGCCGC
CTGGGTGGGAGTAGTGGTGGGGCCTATGGCTTGGAACGCAGCGACGTAAA
TGCCGGATCACCGCTCCGAACGAACGTTGGGAGTCGGGGCTTAAGTATCA
ATTTGTTCGCGTCGAACGCCTCATCGGCCCTCGGTGAGGAGGATAGCAGT
GTCGAcatcccctcttcctacATGGGAGATGACTCAaccgtctcctcctg
gcccACCTCGCCACGGAATAGCCTGGATCAACGGACCTGCTGCAACCTCA
TCTCGTACCGGTATTACTTCATCACCACCCTGCTCGTGGCGTCGGTCCTG
TTCGTCTGGGCCTCTGTCCTGGGCTTTGTCTGGGGCGTCTTGCTATCGCT
CGGGGCCATCATCGCCCACCTTGCCTacttccgtctcctcctccgcggcg
tCCAACCGCCTGTAGGGGTGGCGAACACCAGAAAACAGCGATGTTTGCAT
TACACCGTGCTGCTATTGTCCTATGTGATAATGATCTACATGCTCATTCG
CCTGGCGACGGCTAGAAATACCTACATTCGAGACCACGTATTTCCCTCAA
ATTGCTACCCAAATGCGCTGGGCACTGTGCCTCATGCGTGTGTTCGTGTG
ACGGAGCGTCcaatggaaggagaagactgGTCTCACGGCCTGAGCGCTCC
GACCATTTTCACGCCGGAGGTCGACAGCGTCGTGCGCCTTGTCGACgcct
ggacaaggaagcAATTCCAGACAAaggtggtgggaaggaggagggaggca
gggaaggagagcgtgCACCTGGTGGCAGTGACAGGCTTCTGGGGCTTTGT
GGACGAcgtggccgtggaggtggcCTGCGTcggaaggggcggggccgggg
agggagggaatggaacgGTCGTCGTGCGTGTGCAAAGCGAGCAGCGGTTC
GGGACCCTTGACGGGGGAAAGAACAAGGATCGGGTCAAGTCTCTGCTAAG
CTTCTTGGAGAGGCAGGCTGGAGGCCTGCCCGTGGGGGCGTgctccccca
cgcctccccgGTAG
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Synonyms
Publications