rna8175, rna8175 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8175
Unique Name	rna8175
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2766
Alignment location	KK037248.1:20090..20877 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102391g1.9000.mrna
Orig protein id	gnl\|cribi\|Naga_102391g1.9000
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:20090..20877 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102391g1	gene7919	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22522.1	cds8151	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8175	rna8175-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:20090..20877-
coding sequence from alignment at KK037248.1:20090..20877-

mRNA sequence

>rna8175 ID=rna8175|Name=rna8175|organism=Nannochloropsis gaditana|type=mRNA|length=2766bp
CCTCCCTCCCTCCCTCCGAGGCCGTGGACGCCGCCTTCGCGGAGCTCGGG
GAGGGCTTCGGCAAGGCGGTGCTGGGCAAGTTTAACGTCTCTCAGGTCGG
GGCCATCAAGGCCGCTGCCACCAATACGGGCTTCACGCTCATCAAAGGCC
CCCCCGGGACAGGCAAGACTACCACACTTAAAGGCCTGCTTAACTCCCTC
CACCTTCGCGAGTACCAACGTTTCTATAAGGGCGTGCTGGCGGTGGCGGA
GGCGGAGGACGTCGACACAGAGAGGGCGTGGAGCAAGTACAGGGAGAAGA
AACCTCACATCCTGGTCACCGCGCCCAGCAACGTGGCAGTCGACAACATC
GTCCTTCGGATCATGGAGGACGGCTTCCTCGACGGGCAAGGGCGTCGGTA
CAATCCTCCCCTTGTCCGGATGGGCCGCTTTGGGAGTGAAAAGGTGCGTC
CGGATGGGCCGCTTTGGGAGTGAAAAGGTGCGGGCGGTTTCTCTGGACCA
GCAGGTAGACGCTTTGCTTTTGGAACCGGACAAGAGCCTCCAAAATCGGT
GTTTGCAGGGCCGGAGCCACCTGGCCGCTTTGACTCAGGCCTTGGTCTTG
GCGCGGCACCGGTACCGGCAGTTGGTCAAGGCGATGCGGGAGGGCGGGGG
GCAGGGAGGGAGAGTCCTGCCCTACGGATGGGACGCCCGGGTGGAGGACT
CGGGGACGGTCATCTTCTTCGCCCCTGAGACGGGCCAGACGTCCCAGGAT
TTCCCCACGCTGCCGGCCCTGGGAGGGAGGGAGGGAGGGCAAGGGTTGAC
GGGACGGCGGCTGGAGCAGCTGGGTGCCTACCAAGCCTATTGCGGGGAAG
TGACGCGCTTGGTCGAGCAGATCGAAAACCTGAGCCTGGAGGTGGGGAGG
GGGGAGGTGCGTCTCCTCGGGATGGGCCCCGGGGCCGGCCCGGACCGACT
GCGGGCGGAGTTGGAAACCAACATATGCGACTCGGCGCACATCGTATTGA
CCACCTTGAACACGGCGGGCACCTCCAGCATCACCTCCGGGGCCCGGTTC
ACGGTGGTGGTGGTGGATGAGGCTGCTCAAGCCATTGAACCCTCCACCCT
CATCCCCCTCCAGACGGGGGCGGAGACCTGCGTCCTGGTCGGCGACCCCC
AGCAGCTTCCGGCCACTGTCTTTTCCTCCCTGGGCGCCGCCACGGCCTTC
GAGCGCTCCCTTTTCGAGCGTTTGGAGCACGGGGGCCATCCGGTCCATCT
CCTCGACACCCAGTACCGGATGCACCCGGCCATTTCCGCCTTCCCCCGGC
GGTATTTCTACGGGAAACTCCTCAAGGACGGCGAGAACGTCTTCTCGCCC
GCTTACTCCCGACCCTGGCACGCGTTCCCCGCCTTTCAACCTTTCGCCTT
CCTCGACCTGAAGAGTGACGGAGGCAGAGGGCGGGACAAGGGCCGGGAGG
GAGGGGGAGGACTCTCCTACCGGAACAGCGCCGAAGCACGGCTCTTGGTC
AATGTATATCAGACCCTGCGGCGAGAAGCCAAGGGGCAGGGGGTGAGGGG
CAAGGTGGGAGTGATCACGCCGTACCAGGCCCAGCTGATGGAGCTCCACG
CTCAATTTGCCCGCGCCCTGGGCCCCTCCTACCAGGAGGAGGTCGAGTTG
AACACGGTGGACGGTTGCCAAGGGAAGGAGAAGGACGTCATCCTCTTTTC
CTGCGTCCGGGCGGGGGGGAAGCGAGGCATCGGCTTTTTGGCGGACGTTC
GGCGCATGAACGTTGGCCTCACCCGTGGCCGCGTGGCCATGCTGGTGGTG
GGGAGGGCGGAGACCCTGCAGCAGAACCTGCACTGGAAGGCCCTCCTCGA
CCACGCCCGCACGACGGGCGCCTTTGTGAAGGTCCCTCACCCGGGGTGCA
ACCTGTTGGGGCTGCAGAGAGGGGGAGGGAAGGGGGGAGGGCGAGAAGGA
GGGTGTGGAGGTGGGAAGGAGGGAGATAAGCCCCCGGCCACCGGCCCCGC
CTCGCTCTCCCCTGCCCTTCCTCCGTCACGCCCTCCGGCCCGTCCTCCCT
CTTTTTCGCCGGATCCAGGGAGCCCAACCCCTTCCCACCCTCCTTCCTCC
GTCCCTCCTCTGCCCTTACCCCCCCCCTGCCTCCTCTCTTCCCCCTCAGA
CATGGCCATCCCAGGCACTGCCCTCTGCGACGACTACAGCCGCCCCCCTC
CCTCCTCCCCTTCCTTCCAATCGACCTGCGTCCACGAAAGCCGTCTCCTA
CTCCCCTCCTCCCTCCTTCTCGCCCCCGCCTTCCCCTCCCCGCCGACGCG
CGCGCATGCCAAGGCCACCAGCTCCGGAGAGTCATAGCCAAGACTCGAAA
GCTCCTCCACCTCGTCCTCCCCCTCCAGCCCCTCCAAACCCATACCTCAT
GCTCGCTCCACAACCCTTCCCCGCCCCTCCTCCTCCCCCTCCTCCTCCAC
CTTCCTCGTCCCCTCCTTGATCACTTGTCAGTCTGCCACATGGTGAGAAA
GAGAGGGAGGAAGGGGGATAGGGAAAAAAGGGTGATAGGAGGGGAGGGAG
AGTAGGGCTCCTCCATTTGCTGCCATAGAAGCCAGACCCCTACGGCCCTC
TCGGCGTGAGCTTGCCACACTTGCTGCGAGGATGAGATAGATGAGAGAGA
TCCCTCGGGCAGATTCAGGACTGCCATGGGAGCTGCAGGACGTGCTCTTT
CTTAGCGCCCAAACGCGAGCGCAAATGAGTTTAATGAATCAAAATTGTAG
CGTTAGAATCGTCATC

protein sequence of rna8175

>rna8175-protein ID=rna8175-protein|Name=rna8175|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MRAETLNEVGVEGVGPFSKVEVEAQGGGEGGKGLETLRVLKFENLTAQEQ
QTQQALGGGGGSDRRKLRDCYQWDLVLLVRRMEPVWEAVGRAKGFKRALP
PPSPRPFPRCRGGGGR

mRNA from alignment at KK037248.1:20090..20877-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8175 ID=rna8175|Name=rna8175|organism=Nannochloropsis gaditana|type=mRNA|length=788bp|location=Sequence derived from alignment at KK037248.1:20090..20877- (Nannochloropsis gaditana)
GGTTGACCCGAGCAGATTTTGATCGAGAGCTCTTGGACTGGGATTTCCTC
GCGGCGTGGGAGGAAGAAACCAAACCTCCTTCCTCCTCCTCGGTCGCCGC
CTCCCCCCCTGCCCCAGCCTCGCACGCTAGGGAGGGGCAAAAGACGCTGG
GCTTAAGAAGGAAGATGGAAAGAAGGGGGAAAAGGAGTCCGGGCTGAAAA
GCGAAGGATCTAGTCTCGGAGAGGGCCACAAACGCGTGGAGAAGGAGAAG
CAGGACGGGGCGGGTGGGGGCGGGGGCTGGACGCCAGTGCCGGATACGTT
CACTGACGCCATACATTATGTGCGGGTCTGGTTCCCGCTACTTCTGCAAG
AAATGCGCGCAGAGACTTTGAACGAGGTTGGAGTGGAAGGCGTGGGGCCT
TTTAGCAAGGTCGAGGTGGAAGCGCAAGGCGGCGGGGAGGGAGGGAAAGG
GCTGGAGACGTTGCGAGTTTTGAAATTTGAAAATTTAACGGCCCAGGAGC
AGCAAACGCAGCAGGCGCTGGGGGGAGGCGGGGGAAGCGATAGGAGGAAG
CTTCGAGATTGTTACCAATGGGACTTGGTGCTCCTGGTTCGGCGCATGGA
GCCAGTGTGGGAGGCCGTCGGCCGGGCGAAAGGGTTCAAGCGGGCCCTCC
CCCCGCCCTCCCCCCGCCCTTTCCCCCGCTGCCGAGGCGGTGGAGGACGG
TGAAGTCGTTCCACCTTCTCCCCCCTCCCTTCCCCCCCCGCTCCCACTCT
CGCAGGCACACGGGCTGATTGCCGTGTCGCACCCTTTC

Coding sequence (CDS) from alignment at KK037248.1:20090..20877-

>rna8175 ID=rna8175|Name=rna8175|organism=Nannochloropsis gaditana|type=CDS|length=351bp|location=Sequence derived from alignment at KK037248.1:20090..20877- (Nannochloropsis gaditana)
ATGCGCGCAGAGACTTTGAACGAGGTTGGAGTGGAAGGCGTGGGGCCTTT
TAGCAAGGTCGAGGTGGAAGCGCAAGGCGGCGGGGAGGGAGGGAAAGGGC
TGGAGACGTTGCGAGTTTTGAAATTTGAAAATTTAACGGCCCAGGAGCAG
CAAACGCAGCAGGCGCTGGGGGGAGGCGGGGGAAGCGATAGGAGGAAGCT
TCGAGATTGTTACCAATGGGACTTGGTGCTCCTGGTTCGGCGCATGGAGC
CAGTGTGGGAGGCCGTCGGCCGGGCGAAAGGGTTCAAGCGGGCCCTCCCC
CCGCCCTCCCCCCGCCCTTTCCCCCGCTGCCGAGGCGGTGGAGGACGGTG
A

Synonyms

Publications