rna8164, rna8164 (mRNA) Nannochloropsis gaditana

Overview
Namerna8164
Unique Namerna8164
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1230
Alignment locationKK037247.1:728674..729430 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100290g3.9870.mrna
Orig protein idgnl|cribi|Naga_100290g3.9870
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:728674..729430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100290g3gene7908Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8164rna8164-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22531.1cds8140Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8164 ID=rna8164|Name=rna8164|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp
ATGGTTGTAAATGGTATTATGGCTGTAAACAAGGGATCCGTTACCGAAGA
TGCCATTGGGAGTGCATCACGGGTAATCGAAATGCAGGAATCTACTACCT
CGGTCGAATCCTGTCTTCCTGCGCCCATCCCACTTTGCTATCTAGACGGA
AGCAAGGACTACAAAGGAGAAACGCCGAGGATAGTAGATGCTTGTAAAAG
CGCGGGTCGCCGCGTGTCAGCCGTAAGCATTTTATCTCCTCCTTCCGGAC
CTTCTCCGCGGTTATCAGAGGTGTCACGTAGCTATTATTCCAATCATCGG
AACCGCGCTTGGGATTCTTGGAAAGCCATTAGATGCAAAAAATGGAAGGA
GATTGAATGGCAGGGCCGCCTGGAGTGGGCATTGTTGAAGCAGGAATGGA
AGTGGATCGCGATGTTTTTTGTAGCCGAATATTTTAATCTGATTATGCAC
AATTTTGTGTACTGGTTGGAAGGAAAAATGTGGGGAGCGTCGGGTCCCCC
GCCTCCGTTGACAGACTTGGGCATCATGGCTTTTGCGGGAATTTTCCCCC
TCTCCTACAGCTGGTTGGTAGGTTTTTTCTTGTATTTACTCATTGGGATG
GTCTTGGTCCTTTGTCTGGGCCGCTTGCTCCTGAACAATGTGCCCTGGGG
GTGCCCGGAGACGGTGCTGGAGAAGCGAGAGGGCGAGACGCTCCGCACCT
GCTGCATACCCGTTCCCTTCGTCTACATTTGTAAACGGGCCTGTCAAGTC
CTCACCATTGGATTGGTCCTCCGCGTCCTTTCCTTCGTCTTTACCTTGGA
ACCGAACCCAGCCGACTACTGCCACCCTCCCTTTTGGGACCCCCCCGATG
CCCTCCTAGAGATTTTGGGCCGGATCGAAATCGTGGGCAGCTGCGGAGAT
TTGCTCTTCTCCGCCCACACCCTGCACGCGATGGCCATGATGTTGACCGT
CCTGAGGCATGCGCCCGGCCTCTACCTCGTGACGGGCCTGGCCGTCGCCT
CGATGGTCATGGTGGTAATCTCCATGCTGGCCTTCAAGAACCATTACTCG
CACGACATCGTGACCGCCATATACACAAGCGTCCTCCTTTGGATGCTGAC
GCCGGAGCCGACCGTCGCAGATTGCGACCTTTTGAAAGTCGAGCTGCCTC
CGGGTGACATGTGGGGACCTCTGGCACACGTGGGAAGGGATGACGCACGT
CTGTTCTTCTCTTGCCCCCGGATCGCATGA
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protein sequence of rna8164

>rna8164-protein ID=rna8164-protein|Name=rna8164|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MTRASTSCATSPQPPIIVRTGIIRHGTGSPNIQRACVRTNSKVPTPHATS
SQCRFPSCPTSKSRSSIDLRCSPRVTSISGYSSREFHSWRDPGRPLVPLP
GPLSSGPRSHGGCWTCAGEDGGEGGREDGREAWRLDRLNSLGKLRKRLGG
CGAAPSGSPGSSSPLTAFSHFHDKTGDLVSEGS
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mRNA from alignment at KK037247.1:728674..729430+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8164 ID=rna8164|Name=rna8164|organism=Nannochloropsis gaditana|type=mRNA|length=757bp|location=Sequence derived from alignment at KK037247.1:728674..729430+ (Nannochloropsis gaditana)
ATGACGCGCGCGTCCACATCCTGCGCGACAAGCCCTCAACCACCGATAAT
TGTCAGGACTGGTATCATAAGGCACGGTACCGGCAGTCCAAATATCCAAC
GGGCTTGCGTGCGAACTAACAGTAAAGTCCCCACACCCCATGCAACGTCA
AGTCAATGCAGATTCCCGAGCTGTCCCACCTCTAAGTCGCGAAGCTCAAT
TGATCTTCGTTGCTCCCCTCGCGTGACTTCAATCTCCGGGTATTCTTCCC
GTGAATTCCATTCATGGAGGGACCCAGGGCGGCCCCTCGTACCGCTCCCt
ggccctctttcctcggGGCCGCGCTCCCACGGGGGATGTTGGACATGTGC
GTCTAAGGACTTCTGaggcccttgcctcctttctgagcagggtggaagag
ggagggggggtccGGGGCAGCGGGTGTGAGGCTGAGAAATTGCACCGGTG
CCGTCGATCTCGTCGTTGCAAGATTAATTTccgcatctcttcctccaagc
cccgcAGAAGGCTTCCACTGTCCTCCGTTTCGCCTGGCTCCGGGTATCCA
GGTGcaggcgaggacggaggggagggtgggagggaagacggacGAGAGGC
GTGGAGGCTGGACAGGTTGAACTCGCTGGGAAAGTTAAGGAAGCGGTTGG
GAGGCTGCGGTGCAGCACCTTCCGGGtcccctggctcctcctcccctttg
accgccttctcccatttCCATGATAAGACCGGCGATCTCGTCTCAGAGGG
TTCATGA
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Coding sequence (CDS) from alignment at KK037247.1:728674..729430+

>rna8164 ID=rna8164|Name=rna8164|organism=Nannochloropsis gaditana|type=CDS|length=1104bp|location=Sequence derived from alignment at KK037247.1:728674..729430+ (Nannochloropsis gaditana)
ATGACGCGCGCGTCCACATCCTGCGCGACAAGCCCTCAACCACCGATAAT
TGTCAGGACTGGTATCATAAGGCACGGTACCGGCAGTCCAAATATCCAAC
GGGCTTGCGTGCGAACTAACAGTAAAGTCCCCACACCCCATGCAACGTCA
AGTCAATGCAGATTCCCGAGCTGTCCCACCTCTAAGTCGCGAAGCTCAAT
TGATCTTCGTTGCTCCCCTCGCGTGACTTCAATCTCCGGGTATTCTTCCC
GTGAATTCCATTCATGGAGGGACCCAGGGCGGCCCCTCGTACCGCTCCCt
ggccctctttcctcggGGCCGCGCTCCCACGGGGGATGTTGGACATGTGc
aggcgaggacggaggggagggtgggagggaagacggacGAGAGGCGTGGA
GGCTGGACAGGTTGAACTCGCTGGGAAAGTTAAGGAAGCGGTTGGGAGGC
TGCGGTGCAGCACCTTCCGGGtcccctggctcctcctcccctttgaccgc
cttctcccatttCCATGATAAGACCGGCGATCTCGTCTCAGAGGGTTCAT
GAATGACGCGCGCGTCCACATCCTGCGCGACAAGCCCTCAACCACCGATA
ATTGTCAGGACTGGTATCATAAGGCACGGTACCGGCAGTCCAAATATCCA
ACGGGCTTGCGTGCGAACTAACAGTAAAGTCCCCACACCCCATGCAACGT
CAAGTCAATGCAGATTCCCGAGCTGTCCCACCTCTAAGTCGCGAAGCTCA
ATTGATCTTCGTTGCTCCCCTCGCGTGACTTCAATCTCCGGGTATTCTTC
CCGTGAATTCCATTCATGGAGGGACCCAGGGCGGCCCCTCGTACCGCTCC
CtggccctctttcctcggGGCCGCGCTCCCACGGGGGATGTTGGACATGT
GcaggcgaggacggaggggagggtgggagggaagacggacGAGAGGCGTG
GAGGCTGGACAGGTTGAACTCGCTGGGAAAGTTAAGGAAGCGGTTGGGAG
GCTGCGGTGCAGCACCTTCCGGGtcccctggctcctcctcccctttgacc
gccttctcccatttCCATGATAAGACCGGCGATCTCGTCTCAGAGGGTTC
ATGA
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Synonyms
Publications