rna8161, rna8161 (mRNA) Nannochloropsis gaditana

Overview
Namerna8161
Unique Namerna8161
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length370
Alignment locationKK037247.1:723357..723585 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_104134g1.3070.mrna
Orig protein idgnl|cribi|Naga_104134g1.3070
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:723357..723585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_104134g1gene7905Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8161rna8161-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22536.1cds8137Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8161 ID=rna8161|Name=rna8161|organism=Nannochloropsis gaditana|type=mRNA|length=370bp
CAGGTGGACGAAGACTTCACCACCGCCACTTTCGACGCGGAACTTTTCCA
CGACTGGTGTACTAGCACCTACACGCACCACGTCGGGACGATGAACTTCC
TGGAGGACGGGAGCATGATTTATGGCGCCGGCGACGGCTCCCATTTCCAG
GGCATCGACCACGGGCAGCCGCAGGACGAGTGCACGGATCCCCAGGGCCC
CAAAGATCAAGGAGTCTTCCTCTCGCAGAAGGATGGCTACCTGCGAGGAA
AATTCATCGTCATCAAGCCCGAGAGCTTGCTCAAAGACGAGCATTTGCAG
GCCAACGTGGATTACACGGTCATCTCTCGCGGCGCACGGAATCCCTTCCG
AAGCACCATCGATCCCTTGA
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protein sequence of rna8161

>rna8161-protein ID=rna8161-protein|Name=rna8161|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MRRVAFLEARDLSFSIPPSHLPSLPPSLASPRTNCSGSTTAKSVVSGSID
STTARSISRTRMLSSAPWAPSQAG
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mRNA from alignment at KK037247.1:723357..723585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8161 ID=rna8161|Name=rna8161|organism=Nannochloropsis gaditana|type=mRNA|length=229bp|location=Sequence derived from alignment at KK037247.1:723357..723585+ (Nannochloropsis gaditana)
ATGCGCCGAGTTGCCTTTCTAGAGGCACGCGACTTATCCTtctcaatccc
tccctcccaccttccctccctcccgccctcccttgcgtcTCCCAGAACAA
ACTGTTCTGGGTCGACTACAGCAAAAAGTGTGGTTTCTGGTTCAATCGAT
TCGACGACGGCTCGGTCGATTTCTCGCACGCGCATGCTTTCCTCAGCACC
GTGGGCGCCCAGTCAGGCGGGgtaagggg
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Coding sequence (CDS) from alignment at KK037247.1:723357..723585+

>rna8161 ID=rna8161|Name=rna8161|organism=Nannochloropsis gaditana|type=CDS|length=225bp|location=Sequence derived from alignment at KK037247.1:723357..723585+ (Nannochloropsis gaditana)
ATGCGCCGAGTTGCCTTTCTAGAGGCACGCGACTTATCCTtctcaatccc
tccctcccaccttccctccctcccgccctcccttgcgtcTCCCAGAACAA
ACTGTTCTGGGTCGACTACAGCAAAAAGTGTGGTTTCTGGTTCAATCGAT
TCGACGACGGCTCGGTCGATTTCTCGCACGCGCATGCTTTCCTCAGCACC
GTGGGCGCCCAGTCAGGCGGGgtaa
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Synonyms
Publications