rna8160, rna8160 (mRNA) Nannochloropsis gaditana

Overview
Namerna8160
Unique Namerna8160
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length387
Alignment locationKK037247.1:722329..723099 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102408g1.1303.mrna
Orig protein idgnl|cribi|Naga_102408g1.1303
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:722329..723099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102408g1gene7904Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8160rna8160-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22537.1cds8136Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8160 ID=rna8160|Name=rna8160|organism=Nannochloropsis gaditana|type=mRNA|length=387bp
ACGTGTACAGGTTGTATTTGGGGACCTCTTTTGCTCGACCGCTCCATCTT
CCAGCTTGGGGATCGCTAATTGGCGCCTCCGTTCAAATTTAGGGCAAGCG
TGGGCGACAGTGCAAAACCCAATAAAATGCGAAAAGGGTCGCTGCGGTCA
GGAAAAATGACGATGATGACTTCTTTGATAGCTGCACTACTCCTGGGACT
CAGCACCGTAGCAAGGGCTCAGGTCAAGACATTACAGGACGATCTCCAGG
TCCAAACCGTATGGGACAATATCTGGGGTGTCGTCCAGGTGGTATTTTTG
CCGGGGGGAAAGGTGATGACGGTGCATAAACCCGGGGAACTGCATGTGTA
CGACTCCATCTTCAGCAAGAGTCAGGGAGGTGGCTGA
back to top

protein sequence of rna8160

>rna8160-protein ID=rna8160-protein|Name=rna8160|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MAPATAPISRASTTGSRRTSARIPRAPKIKESSSRRRMATCEENSSSSSP
RACSKTSICRPTWITRSSLAAHGIPSEAPSIP
back to top

mRNA from alignment at KK037247.1:722329..723099+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8160 ID=rna8160|Name=rna8160|organism=Nannochloropsis gaditana|type=mRNA|length=771bp|location=Sequence derived from alignment at KK037247.1:722329..723099+ (Nannochloropsis gaditana)
caggtggACGAAGACTTCACCACCGCCACTTTCGACGCGGAACTTTTCCA
CGACTGGTGTACTAGCACCTACACGCACCACGTCGGGACGATGAACTtcc
tggaggacgggagcaTGATTTATGGCGCCGGCGACGGCTCCCATTtccag
gtggggagggagagaggagggaaggaaggacggacAGATTTTAAACGAGT
GCAAGGCCAAGGCACATCGTAAATCCTACGTAAGAACTACGGGTCAGGAT
AACCCTTCCTGTCTcccatcccatccctccctccctccttccctccctcc
ctccctccctcagggcATCGACCACGGGCAGCCGCAGGACGAGTGCACGG
ATCCCCAGGGCCCCAAAGATCAAGGAGTCTTCCTCTCGCAGAAGGATGGC
TACCTGCGAGGAAAATTCATCGTCATCAAGCCCGAGAGCTTGCTCAAAGA
CGAGCATTTGCAGgtgcctcccgcccgccagtcctccctccttccctccc
tccctccagtcgttccttctcccttgcCGAACAAATTGGAGAGCATTTGA
ttgtccttttcttttcctcccgtcctcgcgAGATTTCTCCCCCCATGGCT
CTTGGCAGAAGGACAGAGCAGTGCAAAAAGAAGACCTGTTCCTGATGtca
ccctctctccttcccttccttcctccctcccaccctctttccctccctca
ggccaaCGTGGATTACACGGTCATCTCTCGCGGCGCACGGAATCCCTTCC
GAAGCACCATCGATCCCTTGA
back to top

Coding sequence (CDS) from alignment at KK037247.1:722329..723099+

>rna8160 ID=rna8160|Name=rna8160|organism=Nannochloropsis gaditana|type=CDS|length=747bp|location=Sequence derived from alignment at KK037247.1:722329..723099+ (Nannochloropsis gaditana)
ATGGCGCCGGCGACGGCTCCCATTtccagggcATCGACCACGGGCAGCCG
CAGGACGAGTGCACGGATCCCCAGGGCCCCAAAGATCAAGGAGTCTTCCT
CTCGCAGAAGGATGGCTACCTGCGAGGAAAATTCATCGTCATCAAGCCCG
AGAGCTTGCTCAAAGACGAGCATTTGCAGgccaaCGTGGATTACACGGTC
ATCTCTCGCGGCGCACGGAATCCCTTCCGAAGCACCATCGATCCCTTGAA
TGGCGCCGGCGACGGCTCCCATTtccagggcATCGACCACGGGCAGCCGC
AGGACGAGTGCACGGATCCCCAGGGCCCCAAAGATCAAGGAGTCTTCCTC
TCGCAGAAGGATGGCTACCTGCGAGGAAAATTCATCGTCATCAAGCCCGA
GAGCTTGCTCAAAGACGAGCATTTGCAGgccaaCGTGGATTACACGGTCA
TCTCTCGCGGCGCACGGAATCCCTTCCGAAGCACCATCGATCCCTTGAAT
GGCGCCGGCGACGGCTCCCATTtccagggcATCGACCACGGGCAGCCGCA
GGACGAGTGCACGGATCCCCAGGGCCCCAAAGATCAAGGAGTCTTCCTCT
CGCAGAAGGATGGCTACCTGCGAGGAAAATTCATCGTCATCAAGCCCGAG
AGCTTGCTCAAAGACGAGCATTTGCAGgccaaCGTGGATTACACGGTCAT
CTCTCGCGGCGCACGGAATCCCTTCCGAAGCACCATCGATCCCTTGA
back to top
Synonyms
Publications