rna8159, rna8159 (mRNA) Nannochloropsis gaditana

Overview
Namerna8159
Unique Namerna8159
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length502
Alignment locationKK037247.1:720840..721529 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101012g1.2979.mrna
Orig protein idgnl|cribi|Naga_101012g1.2979
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:720840..721529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101012g1gene7903Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8159rna8159-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22538.1cds8135Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8159 ID=rna8159|Name=rna8159|organism=Nannochloropsis gaditana|type=mRNA|length=502bp
ACACCGTGCAGAAATTGCGCGAAGCACGGCCTCCCAACTCCGGGAACGGA
TGGACACGATGGAGCGGGAAACGAGACGGAGGCTGTTGATGGCGAATCCT
GAATTAAGGGAGCAGCACACCCAGATGGTAGGGGAAGGTTTGATCGACGA
GGAAGACTTCTGGAACGCCCGTCGCCGCCTTTTGGTGGAGGAGCAGGGGA
AGACGCGAGGGAAACAGGTAGGGCTGCCCTCCAACATCCTGGCGGAGATT
GAGGCGCAGGCCATGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAA
GCCCCCCAGCATCTGTTTGAAGGCGCGGGACGTGCAGTTCCTCTTCGCGT
TGTACCCGGCGTTGAAGACCCTGTACCAGAAGAAAGTGCCCGAGGAGATG
GAGGAGCGCACATTTTGGTCGCAAGTCTTAAGGAGCATTCAATTTCACAA
GCAACGTTTCGAAGCCCACATTGAAGACGAGGAGGGAGGGAAGGCGGGAT
AG
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protein sequence of rna8159

>rna8159-protein ID=rna8159-protein|Name=rna8159|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MRKGSLRSGKMTMMTSLIAALLLGLSTVARAQVKTLQDDLQVQTVWDNIW
GVVQVVFLPGGKVMTVHKPGELHVYDSIFSKSQGGG
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mRNA from alignment at KK037247.1:720840..721529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8159 ID=rna8159|Name=rna8159|organism=Nannochloropsis gaditana|type=mRNA|length=690bp|location=Sequence derived from alignment at KK037247.1:720840..721529+ (Nannochloropsis gaditana)
ACGTGTACAGGTTGTATTTGGGGACCTCTTTTGCTCGACCGCTCCATCTT
CCAGCTTGGGGATCGCTAATTGGCGCCTCCGTTCAAATTTAGGGCAAGCG
TGGGCGACAGTGCAAAACCCAATAAAATGCGAAAAGGGTCGCTGCGGTCA
GGAAAAATGACGATGATGACTTCTTTGATAGCTGCACTACTCCTGGGACT
CAGCACCGTAGCAAGGGCTCAGGTATGTGGGTGTTGCTGTCgcaacaggg
aggaaggagaggcacgATGgccggggacggaggaggcatcGATCCTCTCC
CCTTTATTTCCATCGTGTGCCCAGCAACCTACGGCAATAGTTCAGTGCAA
ATGTGCGCTAATTTTATCGCTTTCCGCCATCCCTGCTGCACTCTCATTGT
ACGACTCCCATATTAttgccctgtccctccctgcgcctccctgcccgccc
ctcctcccttccttcccggcccGCAGGTCAAGACATTACAGGACGATCTC
CAGGTCCAAACCGTATGGGACAATATCTGGGGTGTCGTCCAGGTGGTATT
TTTgccggggggaaaggtgatGACGGTGCATAAACCCGGGGAACTGCATG
TGTACGACTCCATCTTCAGCAAGAGtcaggtgaggagggagggagggaag
gagggaaagaggggaagagcacTTGAAGGGAGGTGGCTGA
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Coding sequence (CDS) from alignment at KK037247.1:720840..721529+

>rna8159 ID=rna8159|Name=rna8159|organism=Nannochloropsis gaditana|type=CDS|length=783bp|location=Sequence derived from alignment at KK037247.1:720840..721529+ (Nannochloropsis gaditana)
ATGCGAAAAGGGTCGCTGCGGTCAGGAAAAATGACGATGATGACTTCTTT
GATAGCTGCACTACTCCTGGGACTCAGCACCGTAGCAAGGGCTCAGGTCA
AGACATTACAGGACGATCTCCAGGTCCAAACCGTATGGGACAATATCTGG
GGTGTCGTCCAGGTGGTATTTTTgccggggggaaaggtgatGACGGTGCA
TAAACCCGGGGAACTGCATGTGTACGACTCCATCTTCAGCAAGAGtcagG
GAGGTGGCTGAATGCGAAAAGGGTCGCTGCGGTCAGGAAAAATGACGATG
ATGACTTCTTTGATAGCTGCACTACTCCTGGGACTCAGCACCGTAGCAAG
GGCTCAGGTCAAGACATTACAGGACGATCTCCAGGTCCAAACCGTATGGG
ACAATATCTGGGGTGTCGTCCAGGTGGTATTTTTgccggggggaaaggtg
atGACGGTGCATAAACCCGGGGAACTGCATGTGTACGACTCCATCTTCAG
CAAGAGtcagGGAGGTGGCTGAATGCGAAAAGGGTCGCTGCGGTCAGGAA
AAATGACGATGATGACTTCTTTGATAGCTGCACTACTCCTGGGACTCAGC
ACCGTAGCAAGGGCTCAGGTCAAGACATTACAGGACGATCTCCAGGTCCA
AACCGTATGGGACAATATCTGGGGTGTCGTCCAGGTGGTATTTTTgccgg
ggggaaaggtgatGACGGTGCATAAACCCGGGGAACTGCATGTGTACGAC
TCCATCTTCAGCAAGAGtcagGGAGGTGGCTGA
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Synonyms
Publications