rna8158, rna8158 (mRNA) Nannochloropsis gaditana

Overview
Namerna8158
Unique Namerna8158
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1951
Alignment locationKK037247.1:717828..719245 -

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Properties
Property NameValue
Producttranscription initiation factor TFIIH subunit H1
Orig transcript idgnl|cribi|Naga_101012g2.2980.mrna
Orig protein idgnl|cribi|Naga_101012g2.2980
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:717828..719245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101012g2gene7902Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8158rna8158-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22539.1cds8134Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8158 ID=rna8158|Name=rna8158|organism=Nannochloropsis gaditana|type=mRNA|length=1951bp
GTTGCACAGATAGATGGAATTGCTCTCTAGCCACAAAAGGAGCCGGTGCT
TGTCTTGCGTGTCAGTGTCATTGGTCGTCGTCGGCCTCTTTTGTCGGGAA
AGCACCATGGCCTGTGCTTTCCTCCATCGTCTGGTCGCCTCCGTACCGAC
CATTTCAACTACGATTGCCGGGCCCGCTGCCACGACGGCATGCAATTTTG
GTCGTGGTAAAAATGTCCGCATGTTTGCCTCCGCCGCTGGGACGGTTGCT
TCTCCTGCGGTCACCGCCCAGGAGGCTCTCTCGAAATATGAGGAACTAGC
TAAGAACTTGCGGGAGATCGATGCATTGGAAGGAATTTCCGGTCTTCTGG
GATGGGACGAGCAAACAATGCTCCCCAGCGGATCCGCGCCGGCCCGGGCT
TTCCACAAAGCTGCCTTGGCCGGCGTCTTACACGAAAAGAAGACCAATCC
CTCCCTGGACGTCTTGCTGCCCGTTCTGGCCTCACCGAATGTTCTAGAAC
TTCTGCCTTCTCCCGAAGCCCGGGCCAACGTCCGCCTTGCCCACAAGGAG
TGGGAGCTGCAGAAGAAGAAAAGCAAGGAGATGACCGCGCGCGAAGCGGC
CTTGGAGGGACGAGGCTATGCGGCCTGGGTAACGGCGAGGGAGAAGGACG
ACTTCCACCACGGCTTCCTGCCCGTGCTACAGGACATCGTCGCGTTGAAA
AAGGAGGTGGCAACGGCGACCCGGCCTGGCTGGGACACGTACGATGCAAA
TTTGGATTTGTTCGAGCCGGGCATGACCGTCCGACGTCTGACGGAGATCT
TCGGGGCACTCAAGACCGAATTGGTGCCGCTTTTGCAGCAGATCATGGCC
TCTTCGAGGTACCAGACGCAGGACAAGGACCGGCCCCCTGCCTTCCAGGG
TGGGCCCCAGTGGGACGTGAACATTCAAGCCCAGCTGTCGCGGGAAGTCA
GCGAGGCGTTGGGCTTTGACTATACCTTAGGACGGATCGACACTTCGGTG
CATCCCTTCACCGGCGGCAGCCACCCGACGGACGTGCGGATCACCACACG
GTACAGCCAGGAGAAGTGGCTGGAGGGAATCAGTGGGACCGTGCACGAGG
TCGGCCATGGCCTCTACGAGCAAGGCCGGAACCCTGAGCAACGGGATCTG
CCCGCCTCCCGCGCTCTCTCCATGGGGGTGCACGAAAGCCAGAGTCTGAT
CTGGGAGCGGATGGTCTTCCAATCCCGGGCCTTTTGGGAGTACGCCACCC
CGGTGTTTTCTCGGCATTTTCCGCACACGCAGGGATTGTCTCCGGAGGAT
TTTTACCGATATGTGAACCGGGTCCAACCGGACTTGATCCGAGTGGAGGC
AGATGAGGTGACATATCCATTGCACATCATTCTCCGTTTTGAAATGGAGC
AAGCCCTCTTGGACGGCTCGTTAGCCCCAGCGGACCTCCCGCACGCGTGG
AACGCAAAGATGAAATCCCTCTTGAACGTGGAGGTGGTCAAGTCGGGGGA
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAACGCCAAGGGGTGCTTGCAGG
ACGTGCACTGGGCCGTCGGTGCCTTGGGCTACTTCCCTTCCTACACTTTG
GGTGCGATGATGGCCGCCCAACTCTGGGTCTCGGCGGAACGGGCGATCCC
GTCTTTGTCGGCAGAAATCGGGCGTGGGAATTTTCAAAAATTGCGCGAAT
GGCTCCGTCGGGAGGTGCACGTGCGGGGCTCCGTGTGTACCTCGATGGAC
GAGCTGTTGCGGACCGTGACCGGCGAGCCGTTAAACCCGGAGTATTTCGT
GATGTATCTGAAACGGAAATACGGCGAGTTGTACTCGCTGGAGGAAGGAG
GGAAGGAGGAGTTGTGAGGGATGTGATACCAAGGGGAGAGAGCACCCGCA
CGGGTGCGCGGTAAAGGAAAGCAAGTATCGAGAAGCAGCCGAGTCTGGCA
C
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protein sequence of rna8158

>rna8158-protein ID=rna8158-protein|Name=rna8158|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
MDTMERETRRRLLMANPELREQHTQMVGEGLIDEEDFWNARRRLLVEEQG
KTRGKQVGLPSNILAEIEAQAMEGGKEGGKEGGKPPSICLKARDVQFLFA
LYPALKTLYQKKVPEEMEERTFWSQVLRSIQFHKQRFEAHIEDEEGGKAG
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mRNA from alignment at KK037247.1:717828..719245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8158 ID=rna8158|Name=rna8158|organism=Nannochloropsis gaditana|type=mRNA|length=1418bp|location=Sequence derived from alignment at KK037247.1:717828..719245- (Nannochloropsis gaditana)
ACACCGTGCAGAAATTGCGCGAAGCACGGCCTCCCAACTCCGGGAACGGA
TGGACACGATGGAGCGGGAAACGAGACGGAGGCTGTTGATGGCGAATCCT
GAATTAAGGGAGCAGCACACCCAGGTGAGCGAGGACGGGGAGGAAGGGGC
GAGGGAGGGCGGAAAGGGGAGGGTTTATTGAGATGATTGCGAAGGACTTC
ACTTGGTGGAAGCAACCTTTTCCCTGGCTGATCCCGCCTTTCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTTCCTGTGCAGAT
GGTAGGGGAAGGTTTGATCGACGAGGAAGACTTCTGGAACGCCCGTCGCC
GCCTTTTGGTGGAGGAGCAGGGGAAGACGCGAGGGAAACAGGTAGGGCTG
CCCTCCAACATCCTGGCGGAGATTGAGGCGCAGGCCATGGAGGGCGGGAA
GGAGGGCGGGAAGGAGGGCGGGAAGCCCCCCAGCATCTGTTTGAAGGCGC
GGGACGTGCAGTTCCTCTTCGCGTTGTACCCGGCGTTGAAGACCCTGTAC
CAGAAGAAAGTGCCCGAGGAGATGGAGGAGCGCACATTTTGGTCGCAAGT
CTTAAGGAGCATTCAATTTCACAAGCAACGTTTCGAAGCCCACATTGAAG
ACGAGTTTTCGCGGGCCCGGGAGCTGGGAGGACGGGGAGACGAAAAGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGTTGAAGGAGGT
GGACCCCGTCTTCAACTTGATGTCGGGGGTGGAGGCTGAAGGCGGGGGCG
AGGGCGGGAGCGGGATGTTGGGTGGGAAAGAGGAGGCGACGGCGGTGAAC
AAGGTGAGCGAAGAGGTGATGAGCAAGTACAATCGCCAGGCGTCTCTGTT
GGTGCGCGCGAAGGGACATGTCCCTATACAGGAACACGTGGATATGCCTG
ATTTGCACGCTGAGTTCAACGAGGAGGAGGGGGAGGAGGAAGGGGAGGGA
AAGGGAGGGAGGGAGGGGAGGAGGAGGAGGTTTGCCAGGTTGGAGCTGCG
GAACCGGGATTTGTACGCCACGGCTTTGGGGGGTGACGAGGACGGGGTGG
AGGGAGGGAGGGAGGCAGGGGTGGAAGGAGGGAGGGAGGTGGACCTGTCG
ATCTACGACGTGGAGAAGTATTCGCCGCATCTTCCAAGCGCCATCCCGGC
GTCGGCACCGGCCTTGGCCGTGCTGAACGACATCATGGGGATGGTGATGG
AGGAAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGATGAGAGTGAG
ATGCAGCGGGATTTGCCTCAAGCCTATGTGGAGTTCGTCCGAGTTTCGGA
AATACTTCGGCATTTCCACGCGTTCTTTTTGCGTTTCCAACTGCAGGGAG
GGAGGGAAGGCGGGATAG
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Coding sequence (CDS) from alignment at KK037247.1:717828..719245-

>rna8158 ID=rna8158|Name=rna8158|organism=Nannochloropsis gaditana|type=CDS|length=1359bp|location=Sequence derived from alignment at KK037247.1:717828..719245- (Nannochloropsis gaditana)
GGAGGGAGGGAAGGCGGGATAGATGGTAGGGGAAGGTTTGATCGACGAGG
AAGACTTCTGGAACGCCCGTCGCCGCCTTTTGGTGGAGGAGCAGGGGAAG
ACGCGAGGGAAACAGGTAGGGCTGCCCTCCAACATCCTGGCGGAGATTGA
GGCGCAGGCCATGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAAGC
CCCCCAGCATCTGTTTGAAGGCGCGGGACGTGCAGTTCCTCTTCGCGTTG
TACCCGGCGTTGAAGACCCTGTACCAGAAGAAAGTGCCCGAGGAGATGGA
GGAGCGCACATTTTGGTCGCAAGTCTTAAGGAGCATTCAATTTCACAAGC
AACGTTTCGAAGCCCACATTGAAGACGAATGGACACGATGGAGCGGGAAA
CGAGACGGAGGCTGTTGATGGCGAATCCTGAATTAAGGGAGCAGCACACC
CAGGGAGGGAGGGAAGGCGGGATAGATGGTAGGGGAAGGTTTGATCGACG
AGGAAGACTTCTGGAACGCCCGTCGCCGCCTTTTGGTGGAGGAGCAGGGG
AAGACGCGAGGGAAACAGGTAGGGCTGCCCTCCAACATCCTGGCGGAGAT
TGAGGCGCAGGCCATGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGA
AGCCCCCCAGCATCTGTTTGAAGGCGCGGGACGTGCAGTTCCTCTTCGCG
TTGTACCCGGCGTTGAAGACCCTGTACCAGAAGAAAGTGCCCGAGGAGAT
GGAGGAGCGCACATTTTGGTCGCAAGTCTTAAGGAGCATTCAATTTCACA
AGCAACGTTTCGAAGCCCACATTGAAGACGAATGGACACGATGGAGCGGG
AAACGAGACGGAGGCTGTTGATGGCGAATCCTGAATTAAGGGAGCAGCAC
ACCCAGGGAGGGAGGGAAGGCGGGATAGATGGTAGGGGAAGGTTTGATCG
ACGAGGAAGACTTCTGGAACGCCCGTCGCCGCCTTTTGGTGGAGGAGCAG
GGGAAGACGCGAGGGAAACAGGTAGGGCTGCCCTCCAACATCCTGGCGGA
GATTGAGGCGCAGGCCATGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCG
GGAAGCCCCCCAGCATCTGTTTGAAGGCGCGGGACGTGCAGTTCCTCTTC
GCGTTGTACCCGGCGTTGAAGACCCTGTACCAGAAGAAAGTGCCCGAGGA
GATGGAGGAGCGCACATTTTGGTCGCAAGTCTTAAGGAGCATTCAATTTC
ACAAGCAACGTTTCGAAGCCCACATTGAAGACGAATGGACACGATGGAGC
GGGAAACGAGACGGAGGCTGTTGATGGCGAATCCTGAATTAAGGGAGCAG
CACACCCAG
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Synonyms
Publications