rna8149, rna8149 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8149
Unique Name	rna8149
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1590
Alignment location	KK037247.1:693294..694490 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100378g2.10075.mrna
Orig protein id	gnl\|cribi\|Naga_100378g2.10075
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:693294..694490 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100378g2	gene7893	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22547.1	cds8125	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8149	rna8149-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:693294..694490-
coding sequence from alignment at KK037247.1:693294..694490-

mRNA sequence

>rna8149 ID=rna8149|Name=rna8149|organism=Nannochloropsis gaditana|type=mRNA|length=1590bp
GAAACGCTCTCACCTGTCTGGACGGCATCCGTCGGTCGCTCTCCCGGGCC
GTGGAAGGGGAGGAAGGGAGGGAAGGAGGGAAAGAGGGAGGGAAGGAGGG
CGAGGAAGAGAGACTGTGTCTGCACATGGCACAGGTGGAAGTCTTGCAGC
GGATCGGCCGGGTCTTCTTGCAGGTGGGCAACGTCCAGGAAGCTCGGCGT
TTTTGGAACCACGCGGAGATTTTGGTGCTCAAAGCCAAGAGCTGCGCCCT
TAGCGCGCAGCAGTTCTCCTCCCAGGGCCATGAGGAGCAAGCAATGCCTG
CCTTCCCTCCCCCCCGACCTCCCTCCCGCCCTCCCTACTTCCTCGGTTGG
GCCGAGTCCCAGGTGGGCATGGGGAAAGGGCTCTTAGCCGTGGCAGAAGG
CCGGTGGGAGGACGCGCAAAGAAACTTCCAGAAGGTCGCGGCGGCTGAGA
GGACCCGATTACTCGAAGACCCCTTCGTTTTCGACCCAGCGCTCTCTCCC
TCCCCCGGTTCCTCGGGCCCCACCGCGCCTCCCTTCCTCTCCCCCTCGCC
TTGGCCGTCCCTCCTCCTTCCCTCCCCAGAGGACAACCTCCTTCTTCCCG
CCATCATCAACCTAGCAGTCCTCTCCTTGCATCGTGGCAACGTGCACGCG
GCCATCCACATATTGGAAAACTTCATCCGGGAAGACCCTCCCCGGAACAT
GACCGAGAACCTGGTGCTCAACCTCTCCTATTTCTACGACCTGGTCGGCG
ATAAGTACGTGCCCGTCCTTTGATATTTTCCCTCTTCTGCCCTCCCTTCC
CGCCCCCCCCCCTGGGGGCTTCCTCGTGTGGCGTATGTCTGTTTGGAAAG
AGAATCAACGAAGAATTTAGGGAGGAGGTGCGTCTTTCCTTTTTCAATTT
TCTCGCTATCAAGCCTCTGAATTCCGCTTTGGAAAGGAAAAACATGTACG
AAACAAATCTTTGTGCGAAGTAAGAGTTAAAGGCTTGTATTTTTCTCCCC
TACCCTTCTTCCCTCTCTGAACAGAGCGAGCCGCGACGAAAAAATGAAAG
TGCTTGAGGCTGTGGCCCGCCGCTTTCGATTGGACGACATCGAGGCACGA
TTTTTCAGCTAGGTGTCTGGGTGGAGAGGGGGCTCCTGAAGAGAAATTCT
TCGAAAGAATTGCGGGAGACAGCTGTTCAGCATCTGTTGCCTCGCACGCC
CGATAGATTTTGCATGTTTTGGATAGCCAGAGTAACTCGGTTCTGATAAG
AGAATTTCCGTCTCATATTTGACAGAGTTTGGCAAACGCTGGAGTTCTTG
TTGTTTTTCTTTCATCTTTGTCAGAATTCTCTCCCAATATGCAAGTCCTA
TATGCAGACCTTTCTCTCAATAAATTACTCGTGACCTTGAACAGTGGGGC
TTCTTCCATTGCATTGGTCATTCTGGCAGCGAGGCTTCTCGTATTCCATG
TTCATTTGGAAGACAGCATAAGGGTTGCTCATGCGCACGTTTCATCGAAA
GGCAATTATAGGTTTGTGACCGATATGTAAAGAGGGACGAACCCGATGCC
ACCTTCGTTTCTCGCATTAAAATGTAAATCTGTGGTTGAT

protein sequence of rna8149

>rna8149-protein ID=rna8149-protein|Name=rna8149|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
MLGLGSPAASISPIPASIISPGYPQASSSKALASSGSSLAKNSRISADAD
ISIGTKDGGTDLTPPVASMTNGQMVECGDFLNQSNLSSNKRHAPDNSIEA
CDGTEVEGSPKAKKVIRLS

mRNA from alignment at KK037247.1:693294..694490-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8149 ID=rna8149|Name=rna8149|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp|location=Sequence derived from alignment at KK037247.1:693294..694490- (Nannochloropsis gaditana)
TTTCAGGCTAAAGTAATCATTTTCATGAGTAACAAAATGCTTATCAACTT
GCCTGTGCGAGACCCGTCCAGCTTCTCGCGGATGCATATCAGAGGGAAGC
CTGCGGTACGTCTACGAAAGCTTTGCCGGTTTGAAGTACCCAGAATTGAA
CAAGATATTGAGCAGTACACGGATGTGATGTGGTTATAATGATAGTGAAG
GAGCGCGCGTGCAAAAAAGATAGGGGTGGTTCGCCATGCTTTCAAACTAA
TGGGTGTCATGGGTGTTCCATGACTGTGTTTTTTTTGCGACAACGGCATC
ACGCGCTCAGCCATATCAACCCCGGCACTCTATTGTCGTTTGTGGAATAA
CATTCAGGTACAAGTCCCGCGTGAGCTTATTCCCACCAACGACACCAATG
CCATGCAGGTACGCGAGACAAAACTATCCCTTGTGCTTAAAATTTGCCAT
AAGCGCAGTTCTTAATCTGGTAGATTTGTGTTACTGTCTTGCGACGCTAT
AATGCAAAGATGAGTTTCTTGATCTTGATACACGACGCTTAATGTGTTGA
ATTTGGACAACATTACCCTTTACGTAATATATGTTCATCGTCATAGCATA
GCAAACGAAATGGCATGCGATGCGTGAAAGTTGAAAAAATTATTGGATCA
AGATTCATTTCAAGTATTTCCGGCAACCCTCTTGCAATCATGCCACACTA
TAGCCCACCCCTAATAGAGCAGGCGAGCCCTGGATGTTAGGCCTGGGTTC
TCCCGCTGCCAGCATCTCTCCAATTCCTGCCTCAATTATCTCGCCCGGCT
ATCCACAAGCCTCTTCCTCCAAAGCACTTGCATCGAGTGGTTCGTCATTA
GCGAAGAACTCCAGGATAAGCGCGGACGCTGATATTTCAATAGGAACAAA
AGATGGAGGAACTGATTTGACACCACCCGTAGCATCCATGACAAATGGAC
AAATGGTGGAATGCGGCGATTTTTTAAATCAATCGAACTTGTCGTCAAAT
AAACGACATGCGCCTGACAATTCAATAGAAGCATGCGATGGTACTGAGGT
TGAAGGATCACCAAAAGCGAAAAAGGTGATTCGCTTGAGTTAGGACAATT
TAAGAGGATAAAAAGAAAGGGCGAATAAAACAGTACAATGCGTTATATGA
CCTTGCTCGTCTCAAATGGCGACCACCAGAAGAAATCCTGTTCGATC

Coding sequence (CDS) from alignment at KK037247.1:693294..694490-

>rna8149 ID=rna8149|Name=rna8149|organism=Nannochloropsis gaditana|type=CDS|length=360bp|location=Sequence derived from alignment at KK037247.1:693294..694490- (Nannochloropsis gaditana)
ATGTTAGGCCTGGGTTCTCCCGCTGCCAGCATCTCTCCAATTCCTGCCTC
AATTATCTCGCCCGGCTATCCACAAGCCTCTTCCTCCAAAGCACTTGCAT
CGAGTGGTTCGTCATTAGCGAAGAACTCCAGGATAAGCGCGGACGCTGAT
ATTTCAATAGGAACAAAAGATGGAGGAACTGATTTGACACCACCCGTAGC
ATCCATGACAAATGGACAAATGGTGGAATGCGGCGATTTTTTAAATCAAT
CGAACTTGTCGTCAAATAAACGACATGCGCCTGACAATTCAATAGAAGCA
TGCGATGGTACTGAGGTTGAAGGATCACCAAAAGCGAAAAAGGTGATTCG
CTTGAGTTAG

Synonyms

Publications