rna8147, rna8147 (mRNA) Nannochloropsis gaditana

Overview
Namerna8147
Unique Namerna8147
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1779
Alignment locationKK037247.1:683495..684908 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101173g1.3225.mrna
Orig protein idgnl|cribi|Naga_101173g1.3225
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:683495..684908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101173g1gene7891Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8147rna8147-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22551.1cds8123Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8147 ID=rna8147|Name=rna8147|organism=Nannochloropsis gaditana|type=mRNA|length=1779bp
ACCCGTTGAAGCACTGCCACCGTGGCCACACAACCGCACGTATGAAGGAG
ACATTTATGTTTTGAAATACACACAGACGTCTACAGGTTCGCAACAGCCC
GGCGAAAAAGGTTCATGAACGTGGAGACCGCATCCGCAAACTAAATATCT
TCGTCCTGCCCCCCAGGACCCCCAACACTACCGACCTCCTCCCGTCTATT
TCGTCTCTGCCTCCTTAGGGAAAAAAAGGAAACCCGTGCTGAAAGGATGC
GTTTCGGATACCGCCCGTCCCGTCTTTTGGGAGCGGTGCATTCCGGGGGA
AATGTTGTGTTTTCCCCGGACGGCAACACGTTGTACAGCCCGGTAACCAA
TCGCGTGGTTGTCTTCGACCTAATACGGCATGTGTCCACCATGCTCCCGT
ACGAGCACGCCTACCCCATCCGTCGCGTCGCAGTCTCCCCCAACGGACGT
TTCTTGCTCACGGTCGACACAGGCGGCTACCTTTTCCTTGGCCATGTGTC
GCGTGGCATAATCTTGTGTCGGATGCGACTCAAGCGTCCCAATAAGGTAC
GAGACCTGGTTTTCTCGCCGGATGGGCAGTTTTTCGCCGTCACCCAGGAC
CGTCAATTCCAAGTGTGGCGCACGCCGGGTGCAGCCCGGGAATTCGCTCC
TTTTGTGTTGCACCGGACGTTTGGGTCACATGGCGACGAGATATTGAGCC
TGGCTTGGGCCCCCTGTGGGCAGTATCTGCTTACTGGGTCCAAGGATTTG
ACCGTGAGAATTTGGAGCCTCCACCCTCTGCCTCCGGCGGTCTTCACGCC
CGCCACCCTATCGGGCCACCGGGATCGGATCGTCGGCGCCTTCTTTAGTG
CGTCTGGCCCCGTGGAAGCCCGGGACCCTCCCCTCCTGTCCGACGGAGGT
GCGGGCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCATCCACTCC
CAAAGGGCCCGACACCGTCTGGACCTCCCCCCGGTCCTCGCCCCTCTCCT
CCCTCCGCATCTACTCCATCGCCCGCGACGGCTTCCTCTACGCGTGGGTG
ATCGACCCCAGCACCCAGACCTGGAAATGCCACGACCGGCACGCCTTTCA
AAAATCCCGGCGGGCCCATGTGGTGTCTGTGTGTTACCATGCCATCTCCT
CCCCGCTCCCCGCCGCCGCCGCCACGGCCCCCTCCCCCGGCACCGCCCTC
CTGGTCGTGGGGTTCTCCGACGGCGTCTTCGGCCTCTACGACCTCCCGAC
CGGCGCCGTGGTCCACACCCTGTCCGTCTCATCGGGACAGATCGGAACGG
TCGCCCTGAATTTGACCGGGGAATGGCTGGCCTTGGGTTGTGCTCCCCTG
GGCCAGCTGTTGGTGTGGGAGTGGCAGTCGGAGACCTACGTGTTGAAGCA
ACAAGGACACGCTCAGGCGGTGAACGCGGTCGCCTACTCCCCCGACGGAC
AAGTGATGGCCACGGGGGGGGAGGACGCCAAAGTCAAGCTCTGGTCGACT
GCCTCTGGCTTCAGTTTCGTCACCTTCACGGCCCATGACGCCCCTGTCAC
TGCTCTGGCCTTCCTGGGCTCGGGGCAGGCGGTCTTGTCGGCCTCCTTGG
ACGGCACGGTTCGGGCGCACGATTTGTTGCGGTACCGGAACTTTCGCACG
TTGACCACCCCCGCCCCGACCCAACTCCTCTCCTTGGCCGTCGATCCCAG
CGGGGAGGTGGTTTGTGCGGGGTCGAGCGAGCCGTTTGAGGTGGGGAGGG
GCCGAAGGAGGGAGGGAGGGTGGGAGGGA
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protein sequence of rna8147

>rna8147-protein ID=rna8147-protein|Name=rna8147|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MFPPFCTSRAQCLHPFRFQHNVCIKHSRQNPICAAPHSPPFSPPPLPPPP
RGFVQATSASRDPLSPVLATPPPPPVKPTYAVPPPPPPPLSSSSPSLVFH
DPLSSVLAPPARSFPSPPPPPPPPPSVFPPPRPPPPPRPWQQYPPPPPPG
RPSSSSVVHSTQEITQQRQQLSSPTSSSPAPDFSFPPPLRDPQSPSSYSS
LPSSSSPSSHQSPPQWPLSHAPPPPPPPPPPPPPPPPPPPPPPPSHSRTS
TFPRPPSPLFSAAPSPSSPPSIRISHLTDHFLAESSGVLPHPEGFRSRRG
LVALCRMRAWKTVLEVTDRLTGGEGENGREGGEEEEVESMMDVVTSSFLA
LRGLGRRQAVKARLERMRGEAPLPFLLLAADAWVWLGEEEKACDVLYRMQ
RRVQQELLGGKTGREGGKEGGRAGFGEPTRG
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mRNA from alignment at KK037247.1:683495..684908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8147 ID=rna8147|Name=rna8147|organism=Nannochloropsis gaditana|type=mRNA|length=1414bp|location=Sequence derived from alignment at KK037247.1:683495..684908+ (Nannochloropsis gaditana)
catttcttttcccagaTACATCAGCTTCCATACCCACATACATGAGTGGG
TatcaagggaaggaaaaagagcggcggagggtggaagaggaaccTCCCAC
TAGCGGCATCGACGGAGGAGATGTTTCCACCCTTTTGTACGTCTCGCGCG
CAATGtctccaccccttccgcTTTCAACATAATGTATGCATCAAACACTC
ACGCCAAAACCCCATTTGCGCTGCACCGCAcagtcctcccttctcccctc
ctccccttccccctccgcccagaGGCTTTGTGCAAGCGACGTCCGCTTCA
CGCGATCCTCTATCTCCTGTCCTCgcaacccctcccccgcctcctgtgAA
GCCCACGTATGCcgttccaccgcctccgccccccccgttgAGCTCGTCGA
GCCCTTCGCTTGTATTCCACGACCCTTTATCATCAGTCTTggcccctcca
gcacgctctttcccctcccctcctcctccccctcctcctcccccctctgt
ctttccacctcctcgtccaccaccaccccctcgACCATGGCAGCAgtatc
ctccacctccacctccagggcgcccctcctcttcttcagtGGTGCACAGC
ACCCAAGAAATAACCCAACAAAGGCAGCAATTATCCTCCCctacgtcctc
ttccccagcccctgacttctccttccctcccccccttcgcgaTCCGCAAT
CTCCATCGTCTtactcctcccttccttcttcatcctcgccGTCATCACAT
CAAAGCCCACCTCAATGGCCGCTATcgcatgctcctcctccccctcctcc
tcctcctcctcctcctcctcctccccctcctcctcctccccctcctccgc
cttcccactcccGCACGTCCACCTTTCCTAGacccccgtctcccctcttc
tccgccgctccttccccgtcttcccctccctccatccgcatCAGTCACCT
CACCGACCACTTCCTCGCCGAGAGCAgcggcgtcctccctcatcccgaAG
GTTTTCGCTCCCGCCGAGGCTTGGTCGCACTCTGTCGGATGCGGGCCTGG
AAGACAGTTTTGGAGGTGACGGACCGAttgacgggaggggaaggggagaa
cgggagggagggcggggaggaggaagaggtggaaagcATGATGGACGtgg
tcacctcctccttcttggctttGCGAGGcttggggaggaggcaggcggtg
AAGGCAAGAttggaaaggatgaggggagaggcgccactccctttccttct
cctggccGCGGACGCCTGGGTCtggctgggagaggaggagaaggcgtgCG
ATGTCTTGTACCGGATGCAGCGCCGAGTCCAACAAGAGctgctgggaggg
aagacagggagggagggagggaaggagggagggagggcgggcttcGGGGA
ACCGACGCGGGGGG
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Coding sequence (CDS) from alignment at KK037247.1:683495..684908+

>rna8147 ID=rna8147|Name=rna8147|organism=Nannochloropsis gaditana|type=CDS|length=1294bp|location=Sequence derived from alignment at KK037247.1:683495..684908+ (Nannochloropsis gaditana)
ATGTTTCCACCCTTTTGTACGTCTCGCGCGCAATGtctccaccccttccg
cTTTCAACATAATGTATGCATCAAACACTCACGCCAAAACCCCATTTGCG
CTGCACCGCAcagtcctcccttctcccctcctccccttccccctccgccc
agaGGCTTTGTGCAAGCGACGTCCGCTTCACGCGATCCTCTATCTCCTGT
CCTCgcaacccctcccccgcctcctgtgAAGCCCACGTATGCcgttccac
cgcctccgccccccccgttgAGCTCGTCGAGCCCTTCGCTTGTATTCCAC
GACCCTTTATCATCAGTCTTggcccctccagcacgctctttcccctcccc
tcctcctccccctcctcctcccccctctgtctttccacctcctcgtccac
caccaccccctcgACCATGGCAGCAgtatcctccacctccacctccaggg
cgcccctcctcttcttcagtGGTGCACAGCACCCAAGAAATAACCCAACA
AAGGCAGCAATTATCCTCCCctacgtcctcttccccagcccctgacttct
ccttccctcccccccttcgcgaTCCGCAATCTCCATCGTCTtactcctcc
cttccttcttcatcctcgccGTCATCACATCAAAGCCCACCTCAATGGCC
GCTATcgcatgctcctcctccccctcctcctcctcctcctcctcctcctc
ctccccctcctcctcctccccctcctccgccttcccactcccGCACGTCC
ACCTTTCCTAGacccccgtctcccctcttctccgccgctccttccccgtc
ttcccctccctccatccgcatCAGTCACCTCACCGACCACTTCCTCGCCG
AGAGCAgcggcgtcctccctcatcccgaAGGTTTTCGCTCCCGCCGAGGC
TTGGTCGCACTCTGTCGGATGCGGGCCTGGAAGACAGTTTTGGAGGTGAC
GGACCGAttgacgggaggggaaggggagaacgggagggagggcggggagg
aggaagaggtggaaagcATGATGGACGtggtcacctcctccttcttggct
ttGCGAGGcttggggaggaggcaggcggtgAAGGCAAGAttggaaaggat
gaggggagaggcgccactccctttccttctcctggccGCGGACGCCTGGG
TCtggctgggagaggaggagaaggcgtgCGATGTCTTGTACCGGATGCAG
CGCCGAGTCCAACAAGAGctgctgggagggaagacagggagggagggagg
gaaggagggagggagggcgggcttcGGGGAACCGACGCGGGGGG
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Synonyms
Publications