rna8145, rna8145 (mRNA) Nannochloropsis gaditana

Overview
Namerna8145
Unique Namerna8145
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length679
Alignment locationKK037247.1:679556..680992 -

Link to JBrowse

Properties
Property NameValue
Productperiodic tryptophan protein 2
Orig transcript idgnl|cribi|Naga_100730g3.7798.mrna
Orig protein idgnl|cribi|Naga_100730g3.7798
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:679556..680992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100730g3gene7889Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22553.1cds8121Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8145rna8145-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8145 ID=rna8145|Name=rna8145|organism=Nannochloropsis gaditana|type=mRNA|length=679bp
GAGGAAGGGAAAGGGCATCGGCGGTGTGACGGGGAGGGAGCCTTTTGAGG
GAAGAGGAGGAAGGGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGATG
TCGATCGGTCGCAGAGGAGAGAGGGGACGTGGGGCAAGGCCCAGTGCATG
TGGCGCCGCGGGGTCCCCCATGTAGGGGGAGACAAGAGGGAGGGGTGGAG
GGTCGAGCGGCGGCGGAAGCCGGGCACCAAAGTGGAAGCGGGGAGCAGGT
GGAGGCATGTAAGACTGCAGGGTACGGGGTGAAAGATCGCTTGAATGAGG
TGAAGTGTATTAATGACAAGGATAGAAGGGACGAGGCAAGCAAAGTACGG
TTCGAGAGGAAGGAATGAGACACCGATAATGGCAACAGGCGTGACAAAGT
ACAGTAGCTGGGATGAAAAGGGGGAGAGAAACTGCGATACTCCATCAAGG
GAGGCAAGCGGGGTGGGAGACGGCGTCGTGTGGGGGCGTGCGAGGCCCGG
GATGGATCATGAGGGGGAAGGAGAGAGGTTCGATCCGGTCCAAAATGTTG
GACATGGCACAAGGCGATGGATGGGTAAGCCCATGGTGGAAACCAGGCGC
AACTCTGGAGCTTTTCAGGGTGAGAACCGAGGCAGCCTCAGCTTATGCAT
GATTGGGGGGGCGAAGGAAGGATGAGAGG
back to top

protein sequence of rna8145

>rna8145-protein ID=rna8145-protein|Name=rna8145|organism=Nannochloropsis gaditana|type=polypeptide|length=356bp
HAADVLAVAFRPDGKELCVATLNGLLTCWDVAEGHEIRVLDGKRDLQGGR
GHYDKISASAAAAAKHFTSLAYTADGSCLLAGGRSKFLCIYHLETKALVR
KFQLSHDRSLDGVVDKLHSGKVGSDGLPLLGEDAGEDSGEDGGEDEALPG
AKRGVDGSKRRLRAEVRVSCVRFSPTGREWAAATPQGLLVFGLEEDMQFN
PMELDVAATPAAVREKIREGQVGMALVMAGQLNEESVLLEALDAAPPGWE
NLLLLTQALPPSLAPRLLALVAKHLPRSPHLSFLLSFSLALLHTHGKVLR
QDPAKHAPHLRAMQRAILKFQEDVGKHVDSSTALLNLLMAGEGGREEWKE
DGEGKT
back to top

mRNA from alignment at KK037247.1:679556..680992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8145 ID=rna8145|Name=rna8145|organism=Nannochloropsis gaditana|type=mRNA|length=1437bp|location=Sequence derived from alignment at KK037247.1:679556..680992- (Nannochloropsis gaditana)
CACGCTGCCGACGTGCTGGCTGTGGCCTTCCGCCCGGACGGGAAGGAGCT
TTGCGTGGCCACTCTGAACGGGCTTTTGACGTGCTGGGACGTGGCGGAGG
GACACGAAATCCGGGTACTGGACGGCAAGCGGGACTTGCAGGGGGGGCGG
GGTCACTATGACAAGATTTCTGCCTCCGCCGCTGCCGCCGCCAAACATTT
TACCTCCCTTGCCTACACGGCTGATGGCTCGTGTCTCTTGGCGGGGGGGC
GGAGCAAGTTCCTGTGCATCTACCACCTGGAAACTAAGGCGCTCGTGCGG
AAATTTCAACTCAGCCACGACCGCTCCTTGGATGGGGTGGTGGACAAATT
GCATTCGGGCAAAGTGGGCTCGGACGGGCTGCCGTTGCTGGGGGAGGACG
CGGGAGAGGACTCGGGGGAGGACGGGGGGGAGGACGAGGCCTTGCCAGGA
GCCAAACGTGGAGTGGACGGCTCGAAACGAAGGCTCCGGGCCGAAGTCCG
GGTATCCTGCGTGCGCTTCTCCCCGACAGGCAGGGAATGGGCCGCCGCCA
CCCCGCAAGGTTTGTTGGTGTTCGGCTTGGAGGAAGACATGCAGTTCAAC
CCGATGGAATTGGACGTGGCTGCAACACCCGCAGCGGTCAGAGAGAAGAT
TCGGGAGGGACAGGTGGGCATGGCCTTGGTGATGGCAGGTCAACTGAACG
AAGAGAGCGTCCTGCTCGAGGCCCTTGACGCTGCCCCCCCCGGTTGGGAG
AATCTGCTCCTCCTCACCCAGGCCCTCCCTCCCTCCCTCGCTCCTCGCCT
CCTTGCCCTCGTGGCGAAGCACCTTCCCCGCTCGCCCCACCTCTCGTTCC
TGCTTTCTTTCTCCCTCGCGCTTCTGCACACCCACGGGAAGGTCTTGCGC
CAGGACCCGGCCAAGCACGCACCGCATCTGCGGGCAATGCAACGGGCGAT
TTTGAAATTTCAAGAAGACGTTGGGAAGCATGTGGATTCCTCCACGGCGT
TGCTGAACCTCTTGATGGCCGGGGAGGGCGGGAGGGAGGAATGGAAGGAG
GACGGGGAGGGAAAAACATAAGGGGGAAGAAGCGGTGGATGAAAAAAAAA
TGCGGGGAACTAGAGAAAATGGTTCGTACATATAGACAGGAAGTTGAGCT
AAGCATACAAATCCACATTTGAAAGCAACTTCGGGATTCCGGTCAGAAGA
CAATCTTGAAGTCTTTCCTCTCATCCTTCCTTCGCCCCCCCAATCATGCA
TAAGCTGAGGCTGCCTCGGTTCTCACCCTGAAAAGCTCCAGAGTTGCGCC
TGGTTTCCACCATGGGCTTACCCATCCATCGCCTTGTGCCATGTCCAACA
TTTTGGACCGGATCGAACCTCTCTCCTTCCCCCTCATGATCCATCCCGGG
CCTCGCACGCCCCCACACGACGCCGTCTCCCACCCCG
back to top

Coding sequence (CDS) from alignment at KK037247.1:679556..680992-

>rna8145 ID=rna8145|Name=rna8145|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at KK037247.1:679556..680992- (Nannochloropsis gaditana)
CACGCTGCCGACGTGCTGGCTGTGGCCTTCCGCCCGGACGGGAAGGAGCT
TTGCGTGGCCACTCTGAACGGGCTTTTGACGTGCTGGGACGTGGCGGAGG
GACACGAAATCCGGGTACTGGACGGCAAGCGGGACTTGCAGGGGGGGCGG
GGTCACTATGACAAGATTTCTGCCTCCGCCGCTGCCGCCGCCAAACATTT
TACCTCCCTTGCCTACACGGCTGATGGCTCGTGTCTCTTGGCGGGGGGGC
GGAGCAAGTTCCTGTGCATCTACCACCTGGAAACTAAGGCGCTCGTGCGG
AAATTTCAACTCAGCCACGACCGCTCCTTGGATGGGGTGGTGGACAAATT
GCATTCGGGCAAAGTGGGCTCGGACGGGCTGCCGTTGCTGGGGGAGGACG
CGGGAGAGGACTCGGGGGAGGACGGGGGGGAGGACGAGGCCTTGCCAGGA
GCCAAACGTGGAGTGGACGGCTCGAAACGAAGGCTCCGGGCCGAAGTCCG
GGTATCCTGCGTGCGCTTCTCCCCGACAGGCAGGGAATGGGCCGCCGCCA
CCCCGCAAGGTTTGTTGGTGTTCGGCTTGGAGGAAGACATGCAGTTCAAC
CCGATGGAATTGGACGTGGCTGCAACACCCGCAGCGGTCAGAGAGAAGAT
TCGGGAGGGACAGGTGGGCATGGCCTTGGTGATGGCAGGTCAACTGAACG
AAGAGAGCGTCCTGCTCGAGGCCCTTGACGCTGCCCCCCCCGGTTGGGAG
AATCTGCTCCTCCTCACCCAGGCCCTCCCTCCCTCCCTCGCTCCTCGCCT
CCTTGCCCTCGTGGCGAAGCACCTTCCCCGCTCGCCCCACCTCTCGTTCC
TGCTTTCTTTCTCCCTCGCGCTTCTGCACACCCACGGGAAGGTCTTGCGC
CAGGACCCGGCCAAGCACGCACCGCATCTGCGGGCAATGCAACGGGCGAT
TTTGAAATTTCAAGAAGACGTTGGGAAGCATGTGGATTCCTCCACGGCGT
TGCTGAACCTCTTGATGGCCGGGGAGGGCGGGAGGGAGGAATGGAAGGAG
GACGGGGAGGGAAAAACATAA
back to top
Synonyms
Publications