rna8144, rna8144 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8144
Unique Name	rna8144
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2229
Alignment location	KK037247.1:679098..679776 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100730g2.7799.mrna
Orig protein id	gnl\|cribi\|Naga_100730g2.7799
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:679098..679776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100730g2	gene7888	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8144	rna8144-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22554.1	cds8120	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:679098..679776+
coding sequence from alignment at KK037247.1:679098..679776+

mRNA sequence

>rna8144 ID=rna8144|Name=rna8144|organism=Nannochloropsis gaditana|type=mRNA|length=2229bp
ATGCACGAAAATCTCCTGCTATTCCTTCACTCATCGGAAGTGGCTCCTCG
TTCATCCAGCTTTCTGGTTATTAAGCTGCACCGAAGGCCTCGCAAGTCAA
ATGCATACTCATATCACCCATACCACGCCCTCCGGGGAAGGGTGTTGACA
TGGTCAAACTACCTATCGTTCAAGCCGAACTCACGTACCTTTCTCTATGG
TCTCATGCACAGTCTGTGGCATTCTGGTGGTCGGTCACCCATGTCAAGTG
CTGGTAAAAGCACCGGGGCAGGGGACAGCAACCAGGGGCCTTCTCCCCCT
CCCCAAAAAGACCGTGATCCCAGCATTCCCCCCCGCAAACACGCCCTCGA
GCGACCCGTGGTGGATGCCGCTCCTATCCCACGCACGGCCTCTTCCCCTC
ATCGCGTTTCAGCCGCCGGGAGCTGTACCTCCACCCCTCCCTCCGGCTCT
CCCCGGCCTCCGCGTCGTACCCCCCAAGAGAGCACGTTCCTGACAAAACC
CACCGCCAGTAGCCTTCAAAAACGACGAAGCATCGTCCTCACCCACACCC
TGTCCCCTGGTGGCACCAGTGCTTTCAAAACCAGCAGCACTCTCCCTCCT
TCCCCTCCCACGCTGGGTGGCCATGGCCCACGTGTCCCCATCCCCGGACC
TTCCCCCCATGAAGTCACGCCCTCCGTCTCCATCACCTCCACCGTCCTAC
CTTCTCCAACACCCCACGCCCTCAAGGGCTCGACAAAGACCGCTTCACCC
ACCGCCATGCCTGCCGTCACCAACACTCCTGTCCGCGGCCATCAACTGCC
CCCCCTTCCTTCCTCATCACCCGGAGCCTTACCTTCCCTCGCCTCCCCTT
CCCGCTCCATCCTCTCCGCGCCTATCTCAGCACGACGGGCGTACCATCGC
AAAATCGACCAGCACCTCCCTGCAGGGACAGACTCGCCCTCCACCTCTTC
CTCCCTCGGCACCTCCCCCAACACCTCCGTCGCTCCCGGACGCCGGAAGC
CGGGGCCCCCGAGACCCCATGCAACCCCATCCTCCTCCTCCCTCTCCTCC
TCCTCCTCCACCGCCACCACCAAACTGGTCGTCATGTCGGCGGCCGAGAA
AGCCATGGATGGCGCCCCCCAAGGGCGCGTCTACCAGGTCCAGGTTCGAA
ACACGGAGGACCTCCCCCCCTCCCTCCACCCCGCCCTCGACCTCGACCTC
GTCCTGGAGACGGTGAAGGAAGGGGACGCCGCTCTGCACGGGGGACAACG
CGGGGAGGAAGAGAGGGGCCACGCGGACTGGGCACGGGAATACGAGTGCA
TCGACGCCATCCGCCGGCTCGCCCTCCATCCCTCCCTCGGCCCCGCCCTC
CTTCGACCCCACCTCCCCCTCCTCCTCCCCTTCCTGCTCCGGTCCGTGCA
CAACCTGCGTTCGAGCATGCAACGGAACGCCTTGCTCTGCCTCCGTGAGC
TCTTCGTCCCGGCCGGCCTCGGGCCCGCCTTCCCCCCCTTCCTCGAGCCC
ATGTGCGCCCTCCTACTCCGCCAGCTCGGTCATGGGGACAAGAAGTTCAT
CCGGGTAGCCTGCGAAGGGGTCCTGGCCGCCGCGGTAGGCGCCGAAGGAG
GGGCGACCGTGCCTTTCCTCCTTCCCGCCCTCCTCCCCATGGTCAAGGCC
AAGAAAGCGGAAGAAGCCGCAGGCAGCTTGCTTTGGATCGAGCAGGGGCT
GAAGGAGGTCTTGAAGGAGGGAGGGGCCGATGGAGGGAGGGAGGGCGGGC
GAGCGGAAGGGGGGGAGGAGTCGACCCTGACGCGGGCCCTCGGTGCCCTG
TCCCTCACCTCCCCTACCCCCCCCCGCCCATCGACACCTCCTTCCTCCCC
CCTCCCCCCCGCCCTCCCTTCCCTCCTCCCTCCACCGAGAGGGGAGCGGA
CTGACGCTGCCCGCCCTCCTCCTCGCGTTGGCCCACGGCTACGACAGCTG
TCGTTTGGCGACAGGCAAGAAAGCGGCGAAGAGGGCGCTGATTCTCCTGA
GCAGGTCCTTGGACAGGGAGGAGGGCGAGCGGGAGGGCGAGAAAAGGGCG
GGAAGTTCCGCGTTTGAAACAGCCTTGCGGGCCACCGGGGTTTCTCGGGC
AGTGGCGGAGGACATTTTGAAGCACACGTCCGGGGAAAAGTCCGAGGGAG
CCCTCTCCGCCGTCTCGACGCCTGCTTCCTCCCCCCGCGCCTCCTCTCGG
GCCTCGCTTCAGGGCGGTCTTCCCTCCGC

protein sequence of rna8144

>rna8144-protein ID=rna8144-protein|Name=rna8144|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MTRIEGTRQAKYGSRGRNETPIMATGVTKYSSWDEKGERNCDTPSREASG
VGDGVVWGRARPGMDHEGEGERFDPVQNVGHGTRRWMGKPMVETRRNSGA
FQGENRGSLSLCMIGGAKEG

mRNA from alignment at KK037247.1:679098..679776+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8144 ID=rna8144|Name=rna8144|organism=Nannochloropsis gaditana|type=mRNA|length=679bp|location=Sequence derived from alignment at KK037247.1:679098..679776+ (Nannochloropsis gaditana)
gaggaagggaaagggcatcGGCGGtgtgacggggagggagccttttgagg
gaagaggaggaagggagggagggagggagggaaggagggaaggagggatg
tcGATCGGTCgcagaggagagaggggacgTGGGGCAAGGCCCAGTGCATG
TGGCGCCGCGGGGTCCCCCATGTAGGGggagacaagagggaggggtggag
ggtcgagcggcggcggaagcCGGGCACCAAAGTGGAAGCGgggagcaggt
ggaggcaTGTAAGACTGCAGGGTACGGGGTGAAAGATCGCTTGAATGAGG
TGAAGTGTATTAATGACAAGGATAGAAGGGACGAGGCAAGCAAAGTACGG
ttcgagaggaaggaatgagaCACCGATAATGGCAACAGGCGTGACAAAGT
ACAGTAGCTGGGatgaaaagggggagagaaacTGCGATACTCCATCAAGG
GAGGCAAGCGGGGTGGGAGACGGCGTCGTGTGGGGGCGTGCGAGGCCCGG
GATGGATcatgagggggaaggagagaggttCGATCCGGTCCAAAATGTTG
GACATGGCACAAGGCGATGGATGGGTAAGCCCATGGTGGAAACCAGGCGC
AACTCTGGAGCTTTTCAGGGTGAGAACCGAGGCAGCCTCAGCTTATGCAT
GATTgggggggcgaaggaaggatgagagG

Coding sequence (CDS) from alignment at KK037247.1:679098..679776+

>rna8144 ID=rna8144|Name=rna8144|organism=Nannochloropsis gaditana|type=CDS|length=363bp|location=Sequence derived from alignment at KK037247.1:679098..679776+ (Nannochloropsis gaditana)
ATGACAAGGATAGAAGGGACGAGGCAAGCAAAGTACGGttcgagaggaag
gaatgagaCACCGATAATGGCAACAGGCGTGACAAAGTACAGTAGCTGGG
atgaaaagggggagagaaacTGCGATACTCCATCAAGGGAGGCAAGCGGG
GTGGGAGACGGCGTCGTGTGGGGGCGTGCGAGGCCCGGGATGGATcatga
gggggaaggagagaggttCGATCCGGTCCAAAATGTTGGACATGGCACAA
GGCGATGGATGGGTAAGCCCATGGTGGAAACCAGGCGCAACTCTGGAGCT
TTTCAGGGTGAGAACCGAGGCAGCCTCAGCTTATGCATGATTgggggggc
gaaggaaggatga

Synonyms

Publications