rna8138, rna8138 (mRNA) Nannochloropsis gaditana

Overview
Namerna8138
Unique Namerna8138
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length667
Alignment locationKK037247.1:652858..654458 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101264g2.3865.mrna
Orig protein idgnl|cribi|Naga_101264g2.3865
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:652858..654458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101264g2gene7880Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8138rna8138-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22559.1cds8114Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8138 ID=rna8138|Name=rna8138|organism=Nannochloropsis gaditana|type=mRNA|length=667bp
ATCGTCGCCCGGGTTCCTAGGGCCACCAGGGCGCCTTCCCTGGTCGAGTA
CGACCACGTGGGCCGCACCGTCCTCATCTCTTTCGAGCCTGAGGGGGACC
TCAACGTCTTCATCGAAGGCCAATCTCCGGGAATCTGTCCCTTGCGCCAG
ATCGATCAACTGGGCAGCGAGGAGGTCGACGCGGCGGAGGACGGAGGAAA
GGCGTCGTCCGAGGGAGGCATTGCCGGGGTGAACTTCAACCTTCCTTTGG
AAGATCTCGCGCATTTTTTGAGCATGCCCGTCTCGGCCGCCGTGTACCGG
AACGGCTCAGCGCCCTCCATCCAAGATTTGCTTCAGCTCGCGTCCAACGT
GAGCAACCTCTCGTCGATGCTGAGGCAGGGGCCCGTGGGCCTTTTTGACG
GGCTGAGTGCCCGGGAGGATGTGCGGGAGGTGACGGACAACCTCACCGCG
AGCCTGAAAGACAAGGCGGACGAGGCGGGAAAAGAGGTGCAGAAAATGGC
TCTGGGGAGCGTGGGGCTGGAGGAGAAGTTCGTGGCGGGGGAGGTGAAGC
TGATCGAGTCCTTGATCCGAGGGGAAGGGATCAACGACCACTTTGAGGAC
CGGTACTACCGGGCGTTGGAGATGGCGTTCGCGGACCTGAAGGAACGGCG
AGAGGGGGGGTAGGGGG
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protein sequence of rna8138

>rna8138-protein ID=rna8138-protein|Name=rna8138|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
MVCVDRGIAGHWASILELGSVLMRLTTNDTAGCMDSLGDEDDRKQATAQE
VKPEGVGSSVSGDNGQEDANKGGADKERGVAGMKNEESEEAMRATLDRRG
EEIEGKSGATGKHVGATDTSVEEKDGGLPLEVPPRLKEEGVPIPSLSPHP
KQSPPKRKRARSPSMEDAEGKGSGSEKKEKAKAPLRGAVGGKDRLRALHA
AVTREVETLLSSPSSSPSSPPSSSSSSPGLSPAPFVKQLPGPTEGCRRQR
AILKGLDYLYKLAIKRANFVSFGADVIMTLMDVASQAADDRVRKSALQRA
EVLGHLWFESFPSLEEIARMKAVAPEEEEEGEGEEEGEGRGRALCRSRRM
EGRGSGGEGEGGRVGGRKGKRRRRKRPSPTRTM
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mRNA from alignment at KK037247.1:652858..654458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8138 ID=rna8138|Name=rna8138|organism=Nannochloropsis gaditana|type=mRNA|length=1601bp|location=Sequence derived from alignment at KK037247.1:652858..654458- (Nannochloropsis gaditana)
GAAGGCGTGTATGGTCTGTGTGGATAGGGGGATAGCGGGGCATTGGGCAT
CAATATTGGAGCTTGGGAGTGTACTGATGAGACTAACGACCAACGACACA
GCGGGCTGTATGGACAGCTTAGGGGATGAGGATGATAGAAAGCAGGCCAC
AGCTCAAGAAGTAAAGCCTGAAGGGGTTGGCAGCAGTGTATCTGGAGATA
ACGGACAGGAAGATGCCAACAAGGGCGGGGCGGACAAGGAACGGGGTGTG
GCAGGGATGAAGAACGAGGAGTCCGAGGAGGCAATGAGGGCCACGCTCGA
TAGAAGAGGAGAGGAAATAGAAGGGAAGAGTGGTGCAACCGGGAAGCATG
TCGGAGCAACAGACACGAGCGTGGAAGAAAAGGACGGAGGTCTGCCCCTC
GAGGTTCCCCCCCGCCTCAAGGAAGAAGGCGTGCCTATACCATCCCTTTC
GCCTCACCCCAAGCAATCACCACCCAAACGCAAACGTGCGAGGTCCCCGT
CCATGGAGGACGCCGAGGGCAAAGGAAGCGGGTCAGAGAAGAAGGAGAAG
GCAAAAGCTCCCCTTCGAGGGGCCGTGGGGGGGAAAGATCGACTCCGCGC
GCTGCACGCGGCCGTGACGCGCGAGGTGGAGACCCTCCTTTCCTCCCCTT
CCTCCTCCCCTTCCTCCCCCCCTTCCTCCTCCTCGTCCTCGCCCGGCCTC
AGTCCTGCGCCTTTTGTAAAACAGCTCCCAGGGCCGACGGAGGGATGCCG
GCGGCAGCGGGCGATTCTGAAGGGGTTGGATTATCTTTACAAACTGGCCA
TAAAGCGGGCGAATTTTGTGTCTTTTGGCGCAGACGTGATCATGACGCTC
ATGGATGTGGCCTCTCAGGCTGCCGATGACCGCGTCAGGAAATCGGCCTT
GCAGGTCGGGAGGGAGGACGGGGAGAAAACGAGGGAGGGAGGGAAGGAGG
GGGTGGCGGGGGGTGCGGGGGGGGGGCAGGAGAAAAGAGCTGCAGCATGA
AGATGAAGCCCTCTGTGGCAATCGCTCACCTTTGATTGAAACCTTCTTTT
TGTGACAGAGGGCGGAGGTGTTGGGCCATCTGTGGTTCGAGTCCTTTCCC
AGTTTGGAAGAAATTGCGCGAATGAAAGCGGTGGCCCCCGAGGAGGAGGA
GGAGGGCGAGGGCGAGGAAGAGGGCGAGGGGAGGGGGAGAGCGTTATGTC
GTTCCAGAAGGATGGAGGGACGGGGAAGTGGGGGAGAGGGCGAGGGCGGA
AGGGTGGGGGGGAGGAAGGGGAAGAGGAGGAGGAGGAAGCGCCCGTCCCC
GACAAGGACGATGTGAACACAGCCATCCGCGGCATCATCGTCCTGGCCCG
TCTCGGCCTTCCCGCCTCATCCCTCACCCAAGACCTCCGTAGCTTCCTCA
AGTCCGGGTATGTGAAGGCGAAAGATTTCTTCCGTTTCCACCCCCGGCCC
CGCGGGGAGGGATGGGCCGCGTCTCGGATCGTTTTGCCCCGGGAACGCCC
CGCTTTCGCCTTGGCGGAGGCGGTGGACGTTTCGTTTTATGCGGGGAAAG
TGGGGGTGGATCTGGGGGCGACGGCCGAGGAGGTTGTGCCCTTGTTGCAG
G
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Coding sequence (CDS) from alignment at KK037247.1:652858..654458-

>rna8138 ID=rna8138|Name=rna8138|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at KK037247.1:652858..654458- (Nannochloropsis gaditana)
AGGGCGGAGGTGTTGGGCCATCTGTGGTTCGAGTCCTTTCCCAGTTTGGA
AGAAATTGCGCGAATGAAAGCGGTGGCCCCCGAGGAGGAGGAGGAGGGCG
AGGGCGAGGAAGAGGGCGAGGGGAGGGGGAGAGCGTTATGTCGTTCCAGA
AGGATGGAGGGACGGGGAAGTGGGGGAGAGGGCGAGGGCGGAAGGGTGGG
GGGGAGGAAGGGGAAGAGGAGGAGGAGGAAGCGCCCGTCCCCGACAAGGA
CGATGTGAATGGTCTGTGTGGATAGGGGGATAGCGGGGCATTGGGCATCA
ATATTGGAGCTTGGGAGTGTACTGATGAGACTAACGACCAACGACACAGC
GGGCTGTATGGACAGCTTAGGGGATGAGGATGATAGAAAGCAGGCCACAG
CTCAAGAAGTAAAGCCTGAAGGGGTTGGCAGCAGTGTATCTGGAGATAAC
GGACAGGAAGATGCCAACAAGGGCGGGGCGGACAAGGAACGGGGTGTGGC
AGGGATGAAGAACGAGGAGTCCGAGGAGGCAATGAGGGCCACGCTCGATA
GAAGAGGAGAGGAAATAGAAGGGAAGAGTGGTGCAACCGGGAAGCATGTC
GGAGCAACAGACACGAGCGTGGAAGAAAAGGACGGAGGTCTGCCCCTCGA
GGTTCCCCCCCGCCTCAAGGAAGAAGGCGTGCCTATACCATCCCTTTCGC
CTCACCCCAAGCAATCACCACCCAAACGCAAACGTGCGAGGTCCCCGTCC
ATGGAGGACGCCGAGGGCAAAGGAAGCGGGTCAGAGAAGAAGGAGAAGGC
AAAAGCTCCCCTTCGAGGGGCCGTGGGGGGGAAAGATCGACTCCGCGCGC
TGCACGCGGCCGTGACGCGCGAGGTGGAGACCCTCCTTTCCTCCCCTTCC
TCCTCCCCTTCCTCCCCCCCTTCCTCCTCCTCGTCCTCGCCCGGCCTCAG
TCCTGCGCCTTTTGTAAAACAGCTCCCAGGGCCGACGGAGGGATGCCGGC
GGCAGCGGGCGATTCTGAAGGGGTTGGATTATCTTTACAAACTGGCCATA
AAGCGGGCGAATTTTGTGTCTTTTGGCGCAGACGTGATCATGACGCTCAT
GGATGTGGCCTCTCAGGCTGCCGATGACCGCGTCAGGAAATCGGCCTTGC
AGAGGGCGGAGGTGTTGGGCCATCTGTGGTTCGAGTCCTTTCCCAGTTTG
GAAGAAATTGCGCGAATGAAAGCGGTGGCCCCCGAGGAGGAGGAGGAGGG
CGAGGGCGAGGAAGAGGGCGAGGGGAGGGGGAGAGCGTTATGTCGTTCCA
GAAGGATGGAGGGACGGGGAAGTGGGGGAGAGGGCGAGGGCGGAAGGGTG
GGGGGGAGGAAGGGGAAGAGGAGGAGGAGGAAGCGCCCGTCCCCGACAAG
GACGATGTGAATGGTCTGTGTGGATAGGGGGATAGCGGGGCATTGGGCAT
CAATATTGGAGCTTGGGAGTGTACTGATGAGACTAACGACCAACGACACA
GCGGGCTGTATGGACAGCTTAGGGGATGAGGATGATAGAAAGCAGGCCAC
AGCTCAAGAAGTAAAGCCTGAAGGGGTTGGCAGCAGTGTATCTGGAGATA
ACGGACAGGAAGATGCCAACAAGGGCGGGGCGGACAAGGAACGGGGTGTG
GCAGGGATGAAGAACGAGGAGTCCGAGGAGGCAATGAGGGCCACGCTCGA
TAGAAGAGGAGAGGAAATAGAAGGGAAGAGTGGTGCAACCGGGAAGCATG
TCGGAGCAACAGACACGAGCGTGGAAGAAAAGGACGGAGGTCTGCCCCTC
GAGGTTCCCCCCCGCCTCAAGGAAGAAGGCGTGCCTATACCATCCCTTTC
GCCTCACCCCAAGCAATCACCACCCAAACGCAAACGTGCGAGGTCCCCGT
CCATGGAGGACGCCGAGGGCAAAGGAAGCGGGTCAGAGAAGAAGGAGAAG
GCAAAAGCTCCCCTTCGAGGGGCCGTGGGGGGGAAAGATCGACTCCGCGC
GCTGCACGCGGCCGTGACGCGCGAGGTGGAGACCCTCCTTTCCTCCCCTT
CCTCCTCCCCTTCCTCCCCCCCTTCCTCCTCCTCGTCCTCGCCCGGCCTC
AGTCCTGCGCCTTTTGTAAAACAGCTCCCAGGGCCGACGGAGGGATGCCG
GCGGCAGCGGGCGATTCTGAAGGGGTTGGATTATCTTTACAAACTGGCCA
TAAAGCGGGCGAATTTTGTGTCTTTTGGCGCAGACGTGATCATGACGCTC
ATGGATGTGGCCTCTCAGGCTGCCGATGACCGCGTCAGGAAATCGGCCTT
GCAG
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Synonyms
Publications