rna8133, rna8133 (mRNA) Nannochloropsis gaditana

Overview
Namerna8133
Unique Namerna8133
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length291
Alignment locationKK037247.1:644926..647240 -

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Properties
Property NameValue
Productmajor facilitator superfamily mfs_1
Orig transcript idgnl|cribi|Naga_100529g3.9581.mrna
Orig protein idgnl|cribi|Naga_100529g3.9581
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:644926..647240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100529g3gene7876Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22563.1cds8109Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8133rna8133-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8133 ID=rna8133|Name=rna8133|organism=Nannochloropsis gaditana|type=mRNA|length=291bp
ATGCTTATCAGTTCTTTGTTTCTTAACATCCTCCATAAGCACTGTGCTGG
TACTCTCTTAGGCAATGCAATGTCACTTACGAAAACCTTCACCTATATAC
ACCGAGAAACGATGCACGCGTCGGATCCTCAGTTAATTTGGCATGGCACA
CAGCTTCAATCGAGCAAGTTCTTACGTTCCCAGAGACACGACTCAAAACC
AGAATTTGATGCGCCGAGTATTTCACAAGAATTATTTTCAGGAATAGAAT
CTCAATATTTCATCGGACAAGCAGGTAACTTAATTTCATAA
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protein sequence of rna8133

>rna8133-protein ID=rna8133-protein|Name=rna8133|organism=Nannochloropsis gaditana|type=polypeptide|length=631bp
MEEPAPLSPSMPHKVLSSFEVTMSPPRHPSPAHRSTSKHKISSAWLPLGV
MCVGVACLFATQNLIAPNLTSMAEEFALDKEARDLLLGARLPLAYSVFSI
PGAMALGLLADCGSRRLLLLFVLLLGAGATLITAYVESYGGLFWLRVVSG
TATNAAIPIAFSFLGDLYPPDDRALPSTLITAAMGLGILVGQVLAGVLGP
RMGWRAPFVLTALPALAVGLLTCLYVHEPVRGQSEQAMADLMREGGRGHP
AGPARKLDAGAFWRMLQVRTNILLILQAFPGSVPWGVLFAYLNDFLSQEK
GLPVEQATLLVSLFGVGSAVGGIGGGLVGQCTYRRNKRLLPVVMAASTGL
GVLPMLVLVNSTFVSTAYVVLFVIPCTFLAGVLANINGTNVRPLLLNVNV
PETRGSAVSVTNLVANLGKGVGPSIANAWMERVGGSRQSAFNMTLSLWLL
CGALVSLLSFTLVEDETHVQEEMCRSTWSGTGAGAEPALEPTRTGKDARG
WKRHGYSDEVEVLGLLSEQGPREGGPSHEGPHHRVSTASNGVIQRLQHLL
TEEGHGLARQGPHAKPSQPSVHSSYHHPSTLLTQPLAQGHHRDDGPAVLD
SPPNSSLHHRASHVHPHENGGDGAGHGPAYV
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mRNA from alignment at KK037247.1:644926..647240-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8133 ID=rna8133|Name=rna8133|organism=Nannochloropsis gaditana|type=mRNA|length=2315bp|location=Sequence derived from alignment at KK037247.1:644926..647240- (Nannochloropsis gaditana)
CCTATTCGAGGGGGCCGCCTCATATCCTCGTCAGGCGCATCCACGTCGAC
CACTCTCGCCCCTCCTGCCGCTCCTACCGCGGCCTCCTCCTCCAGGGCTG
CAACCCCCTCTTCTCTTGCCGCCCTTACTGGCACGTCTTTGCCCGGAGCC
AACACAACGTCCCTTCAGATGGAAGAACCCGCCCCGCTGTCGCCGAGCAT
GCCGCATAAAGTCCTCTCTTCGTTCGAAGTCACCATGTCGCCGCCTCGGC
ATCCGTCACCCGCCCACCGCAGCACTTCTAAACACAAAATAAGCAGTGCT
TGGCTTCCCCTCGGGGTCATGTGCGTGGGTGTGGCCTGCTTGTTCGCCAC
CCAGAACCTGATCGCCCCGAACCTGACCAGCATGGCGGAAGAATTCGCGT
TGGACAAGGAGGCGCGGGATCTGCTGTTGGGGGCACGCCTGCCCCTGGCC
TACAGCGTCTTTTCGATCCCGGGGGCCATGGCCTTGGGCCTCCTCGCGGA
CTGTGGGAGCCGGCGGCTTTTGTTGCTCTTCGTCTTGCTCCTGGGGGCGG
GCGCGACCCTGATCACCGCCTACGTGGAGAGCTACGGGGGCCTCTTCTGG
CTCCGCGTCGTCAGCGGCACGGCCACGAATGCCGCGATCCCCATCGCCTT
CTCCTTCCTGGGCGACCTGTACCCGCCGGACGACCGGGCCTTGCCCTCCA
CCCTTATCACGGCCGCGATGGGGCTCGGCATTTTGGTCGGCCAAGTGCTG
GCCGGGGTCCTCGGTCCTCGCATGGGCTGGCGAGCGCCTTTTGTGCTGAC
CGCCCTTCCCGCCCTGGCGGTGGGGCTTTTGACTTGCCTGTACGTCCATG
AACCGGTTCGGGGTCAGAGCGAGCAGGCGATGGCGGACTTGATGCGGGAA
GGGGGAAGAGGACACCCGGCGGGGCCCGCGCGGAAATTGGACGCCGGCGC
CTTTTGGAGGATGCTGCAGGTGCGGACGAATATCCTCCTCATCCTCCAAG
CGTTCCCCGGAAGCGTGCCCTGGGGCGTGCTTTTTGCCTATTTGAACGAT
TTCTTGTCGCAGGAAAAGGGTCTCCCCGTGGAGCAGGCCACGCTCTTGGT
CTCTCTCTTCGGGGTGGGCTCGGCGGTGGGAGGTATCGGGGGCGGGCTCG
TCGGTCAATGCACCTACCGTCGGAACAAACGCCTGCTGCCCGTGGTGATG
GCCGCGAGCACCGGCCTCGGGGTCCTCCCCATGCTCGTCTTGGTCAACAG
CACCTTCGTCTCCACTGCCTACGTGGTCCTCTTCGTCATTCCCTGCACCT
TCTTGGCGGGTGTCCTCGCCAACATCAACGGCACCAACGTCCGACCGTTA
CTTTTGAACGTGAACGTCCCGGAAACCCGAGGCTCGGCCGTGTCGGTCAC
GAATCTGGTGGCCAACTTGGGGAAAGGCGTGGGCCCGAGCATTGCCAACG
CCTGGATGGAGCGGGTGGGGGGAAGTCGGCAGAGCGCCTTCAACATGACG
CTCTCCCTGTGGCTGCTGTGTGGGGCCCTGGTCTCCCTCCTGTCTTTTAC
CCTGGTGGAGGACGAGACGCACGTCCAGGAGGAGATGTGCCGCTCGACCT
GGTCGGGCACGGGGGCGGGGGCGGAGCCGGCCCTGGAGCCGACGCGAACG
GGCAAAGATGCGCGGGGTTGGAAGCGCCACGGGTACAGTGATGAGGTCGA
GGTTCTCGGGCTGCTGTCGGAGCAGGGGCCGCGGGAAGGAGGGCCAAGCC
ACGAAGGGCCCCACCACCGGGTTTCAACTGCCAGTAACGGCGTCATCCAA
CGGCTGCAGCACCTGCTCACGGAGGAGGGACACGGGCTGGCGCGTCAAGG
CCCCCATGCCAAGCCGTCGCAGCCCTCGGTCCATTCCTCTTACCACCACC
CCTCCACCCTCCTGACCCAACCGCTGGCGCAGGGCCACCACCGCGACGAC
GGCCCTGCCGTGCTGGATTCCCCGCCGAATTCTTCCTTGCACCACCGTGC
CTCCCACGTGCACCCGCACGAGAACGGCGGGGATGGGGCCGGCCACGGGC
CAGCCTATGTGTAGTCTGCGGGGATACTGGATGCACATGGAACGGGGGTA
GAGTGCCGGTATCCACGCGATGGAATAGGCAGGGGCCAGCAGGAGAGTGA
TGGAGGCTGCAGTTTAGGAGGTACTTGTAGGGAATGGACGGGACAGATGG
TGCACTGAGGCACGGTCCGCTGAGCATGGGCAGGTGATGCGATGCGAAGC
TCTTCTTCATATTTCTTGTTTAAATCCGTTCAAAAATGAAAGCACCCTTG
CCACCCAGAATTTTA
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Coding sequence (CDS) from alignment at KK037247.1:644926..647240-

>rna8133 ID=rna8133|Name=rna8133|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at KK037247.1:644926..647240- (Nannochloropsis gaditana)
ATGGAAGAACCCGCCCCGCTGTCGCCGAGCATGCCGCATAAAGTCCTCTC
TTCGTTCGAAGTCACCATGTCGCCGCCTCGGCATCCGTCACCCGCCCACC
GCAGCACTTCTAAACACAAAATAAGCAGTGCTTGGCTTCCCCTCGGGGTC
ATGTGCGTGGGTGTGGCCTGCTTGTTCGCCACCCAGAACCTGATCGCCCC
GAACCTGACCAGCATGGCGGAAGAATTCGCGTTGGACAAGGAGGCGCGGG
ATCTGCTGTTGGGGGCACGCCTGCCCCTGGCCTACAGCGTCTTTTCGATC
CCGGGGGCCATGGCCTTGGGCCTCCTCGCGGACTGTGGGAGCCGGCGGCT
TTTGTTGCTCTTCGTCTTGCTCCTGGGGGCGGGCGCGACCCTGATCACCG
CCTACGTGGAGAGCTACGGGGGCCTCTTCTGGCTCCGCGTCGTCAGCGGC
ACGGCCACGAATGCCGCGATCCCCATCGCCTTCTCCTTCCTGGGCGACCT
GTACCCGCCGGACGACCGGGCCTTGCCCTCCACCCTTATCACGGCCGCGA
TGGGGCTCGGCATTTTGGTCGGCCAAGTGCTGGCCGGGGTCCTCGGTCCT
CGCATGGGCTGGCGAGCGCCTTTTGTGCTGACCGCCCTTCCCGCCCTGGC
GGTGGGGCTTTTGACTTGCCTGTACGTCCATGAACCGGTTCGGGGTCAGA
GCGAGCAGGCGATGGCGGACTTGATGCGGGAAGGGGGAAGAGGACACCCG
GCGGGGCCCGCGCGGAAATTGGACGCCGGCGCCTTTTGGAGGATGCTGCA
GGTGCGGACGAATATCCTCCTCATCCTCCAAGCGTTCCCCGGAAGCGTGC
CCTGGGGCGTGCTTTTTGCCTATTTGAACGATTTCTTGTCGCAGGAAAAG
GGTCTCCCCGTGGAGCAGGCCACGCTCTTGGTCTCTCTCTTCGGGGTGGG
CTCGGCGGTGGGAGGTATCGGGGGCGGGCTCGTCGGTCAATGCACCTACC
GTCGGAACAAACGCCTGCTGCCCGTGGTGATGGCCGCGAGCACCGGCCTC
GGGGTCCTCCCCATGCTCGTCTTGGTCAACAGCACCTTCGTCTCCACTGC
CTACGTGGTCCTCTTCGTCATTCCCTGCACCTTCTTGGCGGGTGTCCTCG
CCAACATCAACGGCACCAACGTCCGACCGTTACTTTTGAACGTGAACGTC
CCGGAAACCCGAGGCTCGGCCGTGTCGGTCACGAATCTGGTGGCCAACTT
GGGGAAAGGCGTGGGCCCGAGCATTGCCAACGCCTGGATGGAGCGGGTGG
GGGGAAGTCGGCAGAGCGCCTTCAACATGACGCTCTCCCTGTGGCTGCTG
TGTGGGGCCCTGGTCTCCCTCCTGTCTTTTACCCTGGTGGAGGACGAGAC
GCACGTCCAGGAGGAGATGTGCCGCTCGACCTGGTCGGGCACGGGGGCGG
GGGCGGAGCCGGCCCTGGAGCCGACGCGAACGGGCAAAGATGCGCGGGGT
TGGAAGCGCCACGGGTACAGTGATGAGGTCGAGGTTCTCGGGCTGCTGTC
GGAGCAGGGGCCGCGGGAAGGAGGGCCAAGCCACGAAGGGCCCCACCACC
GGGTTTCAACTGCCAGTAACGGCGTCATCCAACGGCTGCAGCACCTGCTC
ACGGAGGAGGGACACGGGCTGGCGCGTCAAGGCCCCCATGCCAAGCCGTC
GCAGCCCTCGGTCCATTCCTCTTACCACCACCCCTCCACCCTCCTGACCC
AACCGCTGGCGCAGGGCCACCACCGCGACGACGGCCCTGCCGTGCTGGAT
TCCCCGCCGAATTCTTCCTTGCACCACCGTGCCTCCCACGTGCACCCGCA
CGAGAACGGCGGGGATGGGGCCGGCCACGGGCCAGCCTATGTGTAG
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Synonyms
Publications