rna8125, rna8125 (mRNA) Nannochloropsis gaditana

Overview
Namerna8125
Unique Namerna8125
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length468
Alignment locationKK037247.1:635972..636499 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101160g3.4091.mrna
Orig protein idgnl|cribi|Naga_101160g3.4091
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:635972..636499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101160g3gene7868Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8125rna8125-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22572.1cds8101Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8125 ID=rna8125|Name=rna8125|organism=Nannochloropsis gaditana|type=mRNA|length=468bp
ATGCGGGGACTCCTGCGCAGGAACAGCAACGGCGGTCAACCAAGAAGCAG
AAAGGGCAAAAACGGCGGCGAACATGGCTTGCAGGCGGATGGGACAGGAG
ATGGCTCTTCGTCATCCACGTGCCACTCCGCCTCCGCCCCTCTCTCTTCA
ACTCGCACATCCCCCTCTTTCGGGCAACGGAGCCAGGCAAACCGGAGCCA
GGACGGCGGCAACAGCCGAAGCAGTGTCCATGGCCCTCCCTCTCCCTCGG
TGGTCTCCCCCGAGTCTTCACTGTCCGAGGACGGGATTGGTCAGGAAGAG
GGAGTGCCGGAGTCCTATCTAGCCCCGCACGAAGCGGCTGACCTTGTCGA
CATGCAGGAGCCTGTGGAGGCTGACAATCTCCGAGTAGAAAAGGCAGTAG
TAGGGGGTGAGAGCCTGCGTGGGATGGCGCCAGGCGTGTCCGGCGTGGAG
GAGGGTGGAGGCCGGTAG
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protein sequence of rna8125

>rna8125-protein ID=rna8125-protein|Name=rna8125|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MPVCRGAASVHRSPRSRPYRASLRLQVSFDAPPRSSSTVHCAPFPSLLPF
LFPIRSQPSPGAAATMSPDLRVVSEGGGGGKGEEGGEGEEEEAEDGRGAR
EEEVRAARWWEDRAALSSLLRDIRQGRRPVDGPLLDLLLVMGRRVFDASY
RPSAGVLSACRPRFKEGTKNDEASV
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mRNA from alignment at KK037247.1:635972..636499+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8125 ID=rna8125|Name=rna8125|organism=Nannochloropsis gaditana|type=mRNA|length=528bp|location=Sequence derived from alignment at KK037247.1:635972..636499+ (Nannochloropsis gaditana)
ATGCCAGTCTGTCGGGGTGCCGCATCGGTCCACCGGAgtcctcgctctcg
tccATATCGGGCGTCCCTGCGCTTGCAAGTGTCTTTTGATGCCCCTCCAC
GCTCATCATCGACGGTCCACTGCgcacctttcccctccctgttgcCGTTT
CTTTTCCCAATCAGGTCACAGCCTAGCCCGGGGGCGGCCGCGACTATGTC
ACCCGACCTTAGGGTAGTctctgagggaggaggaggggggaagggggagg
agggaggggaaggggaggaggaggaggcggaggacggaagaggcgcaagg
gaggaggaagtgcggGCAGCACGCTGGTGGGAAGACCGGGCGGCGCTCTC
GTCCTTGCTGCGGGATATCAGGCAAGGCCGTCGGCCCGTCgacggccccc
tcctcgatctTCTCCTCGTCATGGGCCGACGTGTCTTCGACGCCAGCTAT
CGCCCGTCAGCTGGCGTTCTCTCCGCCTGCCGACCTCGgttcaaggaggg
gacgaagaaTGATGAGGCGTCGGTGTAG
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Coding sequence (CDS) from alignment at KK037247.1:635972..636499+

>rna8125 ID=rna8125|Name=rna8125|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at KK037247.1:635972..636499+ (Nannochloropsis gaditana)
ATGCCAGTCTGTCGGGGTGCCGCATCGGTCCACCGGAgtcctcgctctcg
tccATATCGGGCGTCCCTGCGCTTGCAAGTGTCTTTTGATGCCCCTCCAC
GCTCATCATCGACGGTCCACTGCgcacctttcccctccctgttgcCGTTT
CTTTTCCCAATCAGGTCACAGCCTAGCCCGGGGGCGGCCGCGACTATGTC
ACCCGACCTTAGGGTAGTctctgagggaggaggaggggggaagggggagg
agggaggggaaggggaggaggaggaggcggaggacggaagaggcgcaagg
gaggaggaagtgcggGCAGCACGCTGGTGGGAAGACCGGGCGGCGCTCTC
GTCCTTGCTGCGGGATATCAGGCAAGGCCGTCGGCCCGTCgacggccccc
tcctcgatctTCTCCTCGTCATGGGCCGACGTGTCTTCGACGCCAGCTAT
CGCCCGTCAGCTGGCGTTCTCTCCGCCTGCCGACCTCGgttcaaggaggg
gacgaagaaTGATGAGGCGTCGGTGTAG
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Synonyms
Publications