rna8123, rna8123 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8123
Unique Name	rna8123
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3324
Alignment location	KK037247.1:633180..634765 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101160g1.4092.mrna
Orig protein id	gnl\|cribi\|Naga_101160g1.4092
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:633180..634765 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101160g1	gene7866	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8123	rna8123-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22573.1	cds8099	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:633180..634765+
coding sequence from alignment at KK037247.1:633180..634765+

mRNA sequence

>rna8123 ID=rna8123|Name=rna8123|organism=Nannochloropsis gaditana|type=mRNA|length=3324bp
GCAGCCACGTACACATAGGACCAAGACGGTGGATCTTATCACACGAGAGA
TACTTTGACGGGAAGGCGTACGTGTGGAAGGTTCCCCTGAAACGCATCGC
GCCCGTACAACACGACAGAGGGCAGGGAGCAGCAGCAACTTTTATAGCAG
GCTCGAGTGGAGCATGCGGCGGCAGCGACGCCAAGGCTGCTCAATGGCTT
TCGTTTGCATACTGCTAGTAATAAGCCTCATAGGTGGAAGTGAAGCCTTC
ATCGTTCCTGGGAGTAGGATAAGACCAATACCGTCCATCCCCTCTTTTTC
GTCTCCAGCCTCCTCCTCCTCTAGAAGAAGTTTCCAACCGCCCACGACGG
CCCTCTCATCTCCCTCTCGGCGCTTCCCATCCTTTGCTTCTCGACGACTG
GGCGGAAGGAGCCTCACCATGCTGAAGGAGCCCCAAGGCAGCGACGCTTT
TGCCCGCGTGGTGGAGAAGGAAGGAAAGCTCAGTCCCCTCGCCAAGCTCC
ATTCTGGGCCGGCACAAATCTTGAAGGTGACCACCGTGCCCCTGGCCGCA
GTGGGAGGATTTCTGGCCACGCCCAAGGGTGCCGGCGGCATGTTCCGTGT
CTTTGGGGGCCTGGTTGGGGGCTTGGTCTTGAAGGAAGTGAACTCCAAAC
TCCGGACCATGCGGCAGGCCGGCGCGGAGGTGGCGGTGGCCCGCTTGCTC
CTCGACTACGAATCGGACATCGCCTCGTTGACACCTTCGGCCGTGAAGGC
CGTCACGGCCAAGTACGACGTGAACTACGCGGAGCATTTGGAAATCATGC
GGACCCTGTATACCTCCTTCTTGGTGGCCATGTTGCAATGGCCCCAAGTC
CGGATGCAGGAGCCCGCGTCCTTGATGGACCTGTCCGCCGCCTTGGGCCT
CGACTCCTCCACGATTGGCGACGCGCACTGTGCGGCCGCGGAGGAAGTGG
CGCGGATGCTGGCGGAGGTGCCCTTGGAGGAGCGGGAGGAGGCCTGGGAG
CAGGGCATGGTGGGAAAGCTCCTCTTCCTCTCGGACCGGCTCTATGCCCA
GCTGGAGGAGGAGGAAACCCGGGAGTATGAGTTGGGAAGGGTGACGGAGG
TGCTGGGGCTGACCCCTAAGGAAGGGGAGGAGCGCGTCCGCAGCTTGGTC
TTGCCGTACTACACGAACATTGTGCAGAACGGGGTGACAGCCCTGCGCAC
GGGGGAGGCCCAAGGCGGCCCCAGGGACGGGCCCACGCTCTTGGAGTGGC
GACAGAGCCTGGGGGTCTCGGAAACACAAGCCAACGGCTTGCACGCTCAG
GTGTTCGCGGAGGAGGTGACGCGGTGCCTGGAGGCGGGGCAAGGCCGGAT
CCGGGACGGCGACATGGAGCGGTTGAGCAGCCTCCGCAAGTTCCTGGGAA
TCACGTCCTTGGACGCCGAACGTGTCTTGGAAGGGGTGACGGCGCCCATG
CTTCGACAAGCGATCGTGGAGATGCTGACGCGGTTGACCTCCACCCCTTC
GGACACATGGCCCGAGGTGCTCGGGCACGTGCGGCAACGCCAGAAGGAGC
TGCACATGGTGGACTCCGCCCTCGTCTTCCACATCAAGGACGTGTACCGG
GAGCGGTTGAAAGGCCTGGTCCAACAGGCCAACGACGCGGCGCTGCCCTT
GGAAACAGCGGCCACCGCGGCGGCGTTGGGGGAGGCAGGGGGCCCACCGG
GCCTGGCGGAGACGGCCTCGAAGCTGTGCAAATCAGTGGGTGCGGCCATG
CTGCTCATGCGCCTGATGCGGGAATTCTTGGAGGTGAACAAATTGGAGGA
CGTGATGGACGAAGACCTCTTCCACCTCTCCTTCCTGGGCCTGTTGCCGG
GGGAAATGACCCAGCGGGAGCGCGAGATCACCTTCAGGCAGTACGTTGCG
GCGGTGGTGGAGGCGAAGCTTGTGGACGACGAGGGGGGGAACATCAACGC
CCTGGGCGTGTTCTTGGAGATGGACCCGGCCTACGTCCGGTACACGCTCA
AGTCCCTGGTGGGCCCCATCTACGAGGAGAAGGTCCGGGAATTCGTGGTG
GAGAAGGAGGCGATGACGGAGGCGAACCAGGCGGTGTTGTTGCAGCTGGT
GCGGGATTTCCACGTGGAGGAAGCGGACATGCAGCGCATCGGTCTGAAAT
ATTACGGGGAGAAGGCTCGGGGCTTCTGGGAGAAGAAGCAGGAGTTCAGC
GAGGGGGAGTTGGGGGAGCTGGCCTCGCTCAAGAGCTTCCTCCTCCTGTC
CGACCGGGACGTGGACCAGATCCACGAGCCCCTCGCCCGCGACGCGTTCC
TCCAGGCCGTCCAAGCCGACTTTGCGCGACAAAAGAAGGCCGCCGAGGCC
GACCTCACCGCCGCGCCCTCCGCCCCGCCCCCCCCCCGGCGAGTTTCCAG
GCCCTGGCCCGGCGTTTGGGTCTCTCCGAGGACGCCCGCGACGACCTATT
GGGCGAGGCCTTGACGGCCCATGTGTCGCCCTTGCTGTCCTCGCTCAAGG
GCAATTTCCGGCGGGTGACGGCCCCGGCGGCGGAGGCGGAGGCCCGGGGG
GTGGACGAGGGAGAGGACCCGTTCATTAAGGCTCGGAGCAAGGAGGGCCT
GATGATCAAGACGGAGCGCAACACGAATTTGATGCTGGAAGCGGTGGAGC
TGGTGAATTTCTTGGAGAAGAACGACGGCTTTCGGACGACGAGCATGAAT
TTGGACGATGAGGGGCACATGGCCAAGAAGAGCGTGGACGCCTCCCAAGG
CCGACGCACCGTGACGTCCTACATCTGCAAGGCCTCCATGGGGGGGCCGG
GCGAGGGGAGCTCGGGGAGCCAAGGGAAAGAGGACGCGGAGGCGGACAGC
AAGATGGCGGAAGAGATGTACAAGGCCTTCGTCCAAACCGTGGCGGTGGC
GCCGGAGGGGGAGAAGAAAGAGCGCTACCGGGTGATCCAGGACAAGTTCG
GGGCTGCCTTGGGCATCCACCCTCCCCGGATGGAGGCCTTGAAATTCAAT
CTGTACGCATCCCAGATGCGGAAACTTGTTCGGCAGTGCCTGGAGGTGAA
GGGGTTGATGGGGGCGGAGGACAACGCGGCCCTGGCCCGTTTGAACCTGG
AATATTCGATCGGGAAGGAGCGGGCGGGCCGGTTGGTTCAAGCGGAGAAA
CAGAAATGGTTGGCGGGGACCTTGGTGAGTCTGATCCAAGCGCCGCCGAA
CGTGCTCGGCCCCACCATCAACAAGCTGAGGACGACGGCGGCCAACCTGG
GCATCGATCTTTCCGAGGACGTGCCCGAGTTGACCCCCGGGAACAAGGAG
TTCTTGTTCGGGAAGGAGGTAGGT

protein sequence of rna8123

>rna8123-protein ID=rna8123-protein|Name=rna8123|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
MPIQVAWLLEEGPADADSETITDCVEQFGVEEASANRILEREFKEASRQA
CVDLMGNMERADYLGAFRDLGRLVRIGRCLPLPLAFGEEALLGMAVCGEI
RKLWSAYAKLLGKTSVAVGGEGGSDGLDLSAVIQGIPPAELEKFQQGFGE
EDEILDKLIGGLEALPATAADVDLNIDYRGRKVKRKRPGGEDMMENKEEW
EEGELEMMEKGGRKIVLGEDGREMTILDIIRKAIETRHTFMGQKKRRTGP
QKKGEKPVNAQGRRAA

mRNA from alignment at KK037247.1:633180..634765+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8123 ID=rna8123|Name=rna8123|organism=Nannochloropsis gaditana|type=mRNA|length=1586bp|location=Sequence derived from alignment at KK037247.1:633180..634765+ (Nannochloropsis gaditana)
ATGCCGATCCAGGTGGCCTggctgttggaggagggcccgGCCGATGCGGA
CTCTGAGACCATCACCGATTGCGTGGAGCAGTtcggcgtggaggaggcgt
ctGCCAACCGAATCTTGGAACGGGAGTTCAAGGAAGCCAGGTACAGAGGC
CTCTCGTGTGCGCCCTCGTGTCCTCTCTGGTCGGGTGTCTAGAGGGCTTT
CCCGCACTTGCTTTGATGTGGTCAGAATGTTCTCTCGGCCCCCTGCTCTT
TCTTGCCtatcctcttcccttttcttttttcatgGCTTGAGGGCGTCGGT
CGttcccggaggaggagggatgattTTCGGTGCGAAGGGTGGGGGTTtac
ccctttttccccttacTTCTATGTCGGTGTCTTCCtcacgccttcccccc
cctctctgtACCTCCGTTCCCCTGCCTCTTGGCTTCCTCCAGCCGCCAAG
CCTGCGTGGACTTGATGGGCAACATGGAAAGAGCCGACTACCTCGGTGCT
TTTCGGGATTTAGGCCGACTCGTACGCATAGGCCGGtgcctccccttgcc
cctggcGTTTGGAGAAGAAGCATTACTCGGCATGGCGGTGTGCGGCGAAA
TTCGGAAGCTCTGGTCGGCGTACGCGAAGCTGTTGGGGAAAACGAGCGTG
GCTgtagggggagagggaggaagcgacgggcTCGATTTGTCCGCTGTCAT
CCAGGGGATCCCGCCCGCGGAGCTGGAGAAGTTCCAGCAAGGAtttgggg
aagaagacgagatCCTCGACAAATTGATTGGGGGCTTGGaggccctccct
gccacaggtcaggcccttccccccctctgtcccccaccttctcttctttc
ccgcccggTCGAAAGCCGCTTGCCTTCtcacttgccctccccttttttat
TCTTTGTCTTGTGCCACCTCTCTACTTTTTCAGAGCGTGACGCGCATGCC
ACATTCTTACCGTGttcgcccttctcctgcatgtattccttccctttctc
cccacaGCCGCTGACGTCGATTTGAACATCGACTACCGCGGGCGGAAGGT
CAAGCGcaagcgacccggaggagaggacatgATGGAGAAtaaggaggaat
gggaggagggcgagttggagatgatggagaaggggggacggAAAATTgtg
ctgggggaggacgggcgggaaatGACGATACTGGACATCATTCGCAAGGC
GATTGAGACGCGACATACGTTTATGGGGCAGAAAAAACGAAGGACAGGGC
CGCAGAAGAAGGGTGAGAAGCCAGTGAATGCAcaagggcggcgggcggca
tGAGGAGTGGGGaacggaagggaaggaaacatTGGTTTGTTATGTGTAAG
AAGGATATCATGGGAAGGAGCTTCTGCTGCTCTTCGGAAGAGTAACGTTG
CCTCCTGGTCCGGGCGTGATGAAGAAGATAAAGGACTTATTGAACAAAAA
GAAGAACAAAAGACATCGTTGAAGTAAGTAGCCGGACGCGCTCTGAGTCG
CTGATTTTGTGATTTATTACGGACGTGCTCTGTCCCACTAACGAGGTCAT
TGATATACGTCTTTTTATCCGGACGAAGCTCAAACC

Coding sequence (CDS) from alignment at KK037247.1:633180..634765+

>rna8123 ID=rna8123|Name=rna8123|organism=Nannochloropsis gaditana|type=CDS|length=2403bp|location=Sequence derived from alignment at KK037247.1:633180..634765+ (Nannochloropsis gaditana)
ATGCCGATCCAGGTGGCCTggctgttggaggagggcccgGCCGATGCGGA
CTCTGAGACCATCACCGATTGCGTGGAGCAGTtcggcgtggaggaggcgt
ctGCCAACCGAATCTTGGAACGGGAGTTCAAGGAAGCCAGCCGCCAAGCC
TGCGTGGACTTGATGGGCAACATGGAAAGAGCCGACTACCTCGGTGCTTT
TCGGGATTTAGGCCGACTCGTACGCATAGGCCGGtgcctccccttgcccc
tggcGTTTGGAGAAGAAGCATTACTCGGCATGGCGGTGTGCGGCGAAATT
CGGAAGCTCTGGTCGGCGTACGCGAAGCTGTTGGGGAAAACGAGCGTGGC
TgtagggggagagggaggaagcgacgggcTCGATTTGTCCGCTGTCATCC
AGGGGATCCCGCCCGCGGAGCTGGAGAAGTTCCAGCAAGGAtttggggaa
gaagacgagatCCTCGACAAATTGATTGGGGGCTTGGaggccctccctgc
cacagCCGCTGACGTCGATTTGAACATCGACTACCGCGGGCGGAAGGTCA
AGCGcaagcgacccggaggagaggacatgATGGAGAAtaaggaggaatgg
gaggagggcgagttggagatgatggagaaggggggacggAAAATTgtgct
gggggaggacgggcgggaaatGACGATACTGGACATCATTCGCAAGGCGA
TTGAGACGCGACATACGTTTATGGGGCAGAAAAAACGAAGGACAGGGCCG
CAGAAGAAGGGTGAGAAGCCAGTGAATGCAcaagggcggcgggcggcatG
AATGCCGATCCAGGTGGCCTggctgttggaggagggcccgGCCGATGCGG
ACTCTGAGACCATCACCGATTGCGTGGAGCAGTtcggcgtggaggaggcg
tctGCCAACCGAATCTTGGAACGGGAGTTCAAGGAAGCCAGCCGCCAAGC
CTGCGTGGACTTGATGGGCAACATGGAAAGAGCCGACTACCTCGGTGCTT
TTCGGGATTTAGGCCGACTCGTACGCATAGGCCGGtgcctccccttgccc
ctggcGTTTGGAGAAGAAGCATTACTCGGCATGGCGGTGTGCGGCGAAAT
TCGGAAGCTCTGGTCGGCGTACGCGAAGCTGTTGGGGAAAACGAGCGTGG
CTgtagggggagagggaggaagcgacgggcTCGATTTGTCCGCTGTCATC
CAGGGGATCCCGCCCGCGGAGCTGGAGAAGTTCCAGCAAGGAtttgggga
agaagacgagatCCTCGACAAATTGATTGGGGGCTTGGaggccctccctg
ccacagCCGCTGACGTCGATTTGAACATCGACTACCGCGGGCGGAAGGTC
AAGCGcaagcgacccggaggagaggacatgATGGAGAAtaaggaggaatg
ggaggagggcgagttggagatgatggagaaggggggacggAAAATTgtgc
tgggggaggacgggcgggaaatGACGATACTGGACATCATTCGCAAGGCG
ATTGAGACGCGACATACGTTTATGGGGCAGAAAAAACGAAGGACAGGGCC
GCAGAAGAAGGGTGAGAAGCCAGTGAATGCAcaagggcggcgggcggcat
GAATGCCGATCCAGGTGGCCTggctgttggaggagggcccgGCCGATGCG
GACTCTGAGACCATCACCGATTGCGTGGAGCAGTtcggcgtggaggaggc
gtctGCCAACCGAATCTTGGAACGGGAGTTCAAGGAAGCCAGCCGCCAAG
CCTGCGTGGACTTGATGGGCAACATGGAAAGAGCCGACTACCTCGGTGCT
TTTCGGGATTTAGGCCGACTCGTACGCATAGGCCGGtgcctccccttgcc
cctggcGTTTGGAGAAGAAGCATTACTCGGCATGGCGGTGTGCGGCGAAA
TTCGGAAGCTCTGGTCGGCGTACGCGAAGCTGTTGGGGAAAACGAGCGTG
GCTgtagggggagagggaggaagcgacgggcTCGATTTGTCCGCTGTCAT
CCAGGGGATCCCGCCCGCGGAGCTGGAGAAGTTCCAGCAAGGAtttgggg
aagaagacgagatCCTCGACAAATTGATTGGGGGCTTGGaggccctccct
gccacagCCGCTGACGTCGATTTGAACATCGACTACCGCGGGCGGAAGGT
CAAGCGcaagcgacccggaggagaggacatgATGGAGAAtaaggaggaat
gggaggagggcgagttggagatgatggagaaggggggacggAAAATTgtg
ctgggggaggacgggcgggaaatGACGATACTGGACATCATTCGCAAGGC
GATTGAGACGCGACATACGTTTATGGGGCAGAAAAAACGAAGGACAGGGC
CGCAGAAGAAGGGTGAGAAGCCAGTGAATGCAcaagggcggcgggcggca
tGA

Synonyms

Publications