rna8115, rna8115 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8115
Unique Name	rna8115
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1026
Alignment location	KK037247.1:605302..608127 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100155g2.10228.mrna
Orig protein id	gnl\|cribi\|Naga_100155g2.10228
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:605302..608127 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100155g2	gene7859	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8115	rna8115-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22587.1	cds8091	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:605302..608127-
coding sequence from alignment at KK037247.1:605302..608127-

mRNA sequence

>rna8115 ID=rna8115|Name=rna8115|organism=Nannochloropsis gaditana|type=mRNA|length=1026bp
ATGCCAACACATCTGGTTTCGTCGTTTTTCCGAAAAACTGATGGCGAATC
AATGGTGGCAGACATTCCTGACTGCTCGACTCCTGTGTCGAGTCAGAGCA
TAGTCGAAGCATTCGACGACAAAAGATGCTGTCCATCTTCATCTTGTCCT
GCTGTCTCGCCTGGGGCAATCGGTGGCAGAGAAGAGAGCGCAATCGACAT
AGTTGACGAAGGAAAAGGATGGAGCAACGACGACAAGGAAGGAGGAAAAC
CACCAACGGCCCAAAGCAATGGAGCCAGGCCCCGGAAATGCGTCGACTCA
CCGCAGAGAGTCCCAGCGGCTCGGGGTTTGAAGTCACGAAAAGTCTTGCG
CTTTGTCATCTATACGGGCTGTCTGCTCACCCTCTTCTTCCTGGCCCTGC
TCTTTGCCTATCTAGGGATGGTGGCGACGATACCGCCTCCCTTCATCACG
CTACAACCTAGTACCTTGAAGCATTTGGCATTCGATGGTCCCTACATGAA
CGCCGTGGTCTCTCTGGGGGCAGAGATCGAGAACAAAAGCAACTTTCAAG
TCACAATCCAGGCCTCCACCGTCCTGATCACGTACCACCAGGCAGCCTTG
GGCATGGTCCAACTACCGACCATGCACCTGCATCCCTCCAGAAGTTTCGT
CCACGACACCAACGCCACATTCTACCGCGTCAATACTATAACGGGTCCCA
CCACCCCTGGGAAGAGGGAGCGGGAAGGGGAGGAAGGGGGGGAGGAAGGG
GGTTCAGCGACGACTCCCTTGGGGAAGAGACTTATGGACGAGGTACTGGG
CAAGCAATCCTCCACCTTGAAGCTAGAGGGACATGTGAGCGTGAGGGCGC
ACGTGGTGAAGCGCCAGGGGTTCCCGGCTGTCCCGATCAATCTCCGGCTG
GCCTGTGTGTTTGAGAACCAATGGGGAGGGAGGGAGAACCGAGGGGAGGG
CGGGAGGGAAGAAGAACGGGACAAATACGGGGCTGGCTGCGAGACGACGT
TGCATCCATTTTGGTGGATCCCATGA

protein sequence of rna8115

>rna8115-protein ID=rna8115-protein|Name=rna8115|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
MSAENESRKGSSEGKHTEEVSIEDGKRKKKRHRHESEEEERRLVKAAKKY
LEKHGGGGHEERKTKADRKEEKHEKHHKKSHDKKAKKKKKEGRDEEKDAE
LEKSPPARAIPEVLSAEDDYYRRQAEFRVWLRLIRKLNFEDLPREEAQDQ
FARFVALWNQGRLPDMYYDGVPVHMQTEAHKTTHTWGFAAKMSEDEKDAL
DRMANSIVRSSTAPPGAGKAGGDGVKNRNGASAAASRMGGEGGNGVGSTR
SQPQLSQRDSTRAGPSSAFEEAYAKPTGREAVLAARHAKGERLHGAARAK
EEGRDGLDMPEEALGLGERDTEKEEVRRRQARQNTRVNQRQTEQERRMEE
AARKEKDAMQKLMDTLGLQPGQKIVIPKRGPTG

mRNA from alignment at KK037247.1:605302..608127-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8115 ID=rna8115|Name=rna8115|organism=Nannochloropsis gaditana|type=mRNA|length=2826bp|location=Sequence derived from alignment at KK037247.1:605302..608127- (Nannochloropsis gaditana)
AGTACGAGCAAGGAGGTACAGGGATAGAGCTTACCAGCATCCTTTTCGAA
CACGGCCGCATAGTACCACAAGCCTTAGTTTCCTATCCTTCTGTTGTACA
GGGGAGTGTTGGAGGAAGGAGAATTCAAAAAGGTCTTATGACTGATGGTA
AAGTGATTGCTTCAATGCTGAAAGCTCATCACACAGGCATCACAATCACA
CAGCACTGTGCTATACAGCAATTGCTACAACATCAAGAGCAAAAAAGCGA
ACGGCGGAAAACATTGCGCGATGAGCAGCAGTGACGGAGAAGATAGCAGG
GTGGGAAACGAGGGGGAAAGCCCTGGGAATGAAGGTGGGTAGTACAAGTG
AGGATTGCTACATCCGTAATTCTATTTCCTAAACGCTTCAATGAATGGCA
ATACATACAGCGACAACCTGGATGAGAATAATTACGCGGTGTGCGAATGT
GATCACGAAAGTCTTCACCTCTGCCGTCTCAAGCGCCTTGTTGACCTTTC
GCTATTTTGCTCTCTTCCTTTTTAACCCCCTTTCTTTTGGGCCTTACAGA
GGGCAGACGGTTGAAGCACAAGTCAAAAAAGCACAAAAAGCACTTTACAA
CGGAGAAAGGGGAAAAAAGTCGGAAAAAGGAAAAAAAACACAGCCATCGA
AAAGACCATCGGGTAAGCACGCCACACGGGCGGGTGCACGGTCTCGTAAG
GCAAGGAGGCATGTGCAATTTGTGCGCCCGTCCAACCACTCTCGATACTT
CCGGGTATTTGTTACAACACAGCATCGACGGGATCAAATGAGCGCAGAGA
ATGAGAGCAGAAAGGGCAGTAGCGAGGGTAAGCACACAGAGGAGGTTAGC
ATAGAGGACGGGAAGAGGAAGAAAAAGCGACACCGGCATGAGAGCGAGGA
GGAGGAGAGGCGGCTGGTGAAAGCGGCCAAAAAGTATTTGGAGAAACATG
GCGGAGGCGGACACGAAGAAAGGAAGACAAAAGCTGATAGAAAAGAGGAG
AAGCACGAGAAACATCACAAGAAATCCCACGACAAGAAAGCAAAGAAGAA
GAAAAAGGAAGGGAGGGACGAGGAAAAGGACGCAGAATTAGAGAAAAGCC
CTCCTGCACGAGCTATTCCAGAGGTGCTGAGCGCGGAGGATGACTACTAC
CGTCGCCAGGCAGAGTTCAGGGTGTGGCTGCGACTGATCCGGAAATTGAA
CTTTGAGGTAACAGGGAAATGGTGCACCAGGGGTGTAAAGGGGGAAGAGC
GACCGAGAGGGAGGCTGCTGAGTGGGAAGTGGGTGCAAGGACGTGGGTGG
ATGGAGGACCAAGGCGAGAAATGATGGCGATGACGCCCTCTTTGACCCCT
CGCGGGTAGGGCAAGAGGAATATTGAGTAGGCGTCGGGAAGCTTCCCGTT
CCCAACCTTCTCCGCGCGCTTCCCCCTCTCGTTCCCTCTCTTGTCCACGT
TCGATGGCCTTTTTGGACACCGTCCTCACGCTTTCCCTCCCTCCCTTTAC
GCTCCGTGGCAGGACCTTCCCCGTGAGGAAGCTCAAGACCAATTTGCGCG
TTTCGTCGCTCTCTGGAACCAGGGTCGCCTGCCCGACATGTACTACGACG
GCGTCCCGGTCCACATGCAAACGGAGGCCCACAAAACCACCCATACCTGG
GGTTTTGCGGCGAAGATGAGTGAGGACGAGAAGGACGCCTTGGACCGGAT
GGCCAACAGCATTGTCCGGAGCAGCACGGCGCCCCCCGGGGCGGGGAAAG
CTGGAGGAGACGGCGTCAAGAATAGAAACGGGGCTTCCGCGGCCGCAAGC
AGGATGGGGGGGGAAGGTGGGAACGGGGTTGGCTCAACGAGAAGTCAGCC
GCAGCTCTCTCAGAGGGACTCGACGAGGGCAGGACCCAGTAGTGCCTTCG
AAGAGGCGTATGCCAAGCCCACAGGTCGGGAGGCTGTGTTGGCGGCGCGA
CATGCGAAAGGTGAGCGGCTGCATGGGGCTGCCCGGGCGAAGGAGGAAGG
GAGGGATGGCCTGGACATGCCAGAGGAGGCGCTGGGCTTGGGAGAGAGGG
ACACGGAGAAGGAGGAGGTCAGACGGCGGCAGGCTCGGCAGAATACACGC
GTCAATCAACGGCAGACGGAGCAAGAAAGGCGGATGGAGGAGGCGGCGAG
GAAGGAGAAGGACGCGATGCAGAAGCTAATGGACACGTTGGGGCTGCAGC
CTGGCCAGAAAATCGTGATTCCGAAACGAGGGCCGACGGGGTAATACAGA
AGGGGTTTGAATACGAAGGGAGAATACGGTACACAAAGAGGAAATAACCA
CAATGATAAAAGAGACCACATTGACGAACAGAAAGGCCGATAAGCAGTCG
CAAAAAGCAAGTATCTGTCCTGTCAAAGACCTCTTGATATGCGTCATGAA
AATGGAAAAAAATCACGACGCGTCTTGTCATCTGTTCATGAATGGCAGCT
CTTGAAGAAGGTCGAGGACAGTACGTGAAGAATGGAATAATCGTAATCAA
GGACAGTTGGTTTTGTACACTGACTGCTTATCAATATATGTACGTCTTAT
ATGTGATGAGTAGAGGTTTGGCTTACTTGTGGGGGAAGAAGTTAAAGTAC
TGGTAACCCTTTTGATGAATATCGGACAGAGCTTATTCGTAGATATGTCT
TTTTTGTAGCGGCGCACATACTTGGACACATCTGATACGCATCTCTCTAC
ATAAATACTTTCTCTCCCATCGTTACAATAGAAATAGCCACAAGAATATC
GCGAGCATTGTGAGTAAAAAAAGCATACACAACGAAGGTGTTGGAGGAAA
GGAAACAGAAAAAATACATATTCGCG

Coding sequence (CDS) from alignment at KK037247.1:605302..608127-

>rna8115 ID=rna8115|Name=rna8115|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at KK037247.1:605302..608127- (Nannochloropsis gaditana)
GACCTTCCCCGTGAGGAAGCTCAAGACCAATTTGCGCGTTTCGTCGCTCT
CTGGAACCAGGGTCGCCTGCCCGACATGTACTACGACGGCGTCCCGGTCC
ACATGCAAACGGAGGCCCACAAAACCACCCATACCTGGGGTTTTGCGGCG
AAGATGAGTGAGGACGAGAAGGACGCCTTGGACCGGATGGCCAACAGCAT
TGTCCGGAGCAGCACGGCGCCCCCCGGGGCGGGGAAAGCTGGAGGAGACG
GCGTCAAGAATAGAAACGGGGCTTCCGCGGCCGCAAGCAGGATGGGGGGG
GAAGGTGGGAACGGGGTTGGCTCAACGAGAAGTCAGCCGCAGCTCTCTCA
GAGGGACTCGACGAGGGCAGGACCCAGTAGTGCCTTCGAAGAGGCGTATG
CCAAGCCCACAGGTCGGGAGGCTGTGTTGGCGGCGCGACATGCGAAAGGT
GAGCGGCTGCATGGGGCTGCCCGGGCGAAGGAGGAAGGGAGGGATGGCCT
GGACATGCCAGAGGAGGCGCTGGGCTTGGGAGAGAGGGACACGGAGAAGG
AGGAGGTCAGACGGCGGCAGGCTCGGCAGAATACACGCGTCAATCAACGG
CAGACGGAGCAAGAAAGGCGGATGGAGGAGGCGGCGAGGAAGGAGAAGGA
CGCGATGCAGAAGCTAATGGACACGTTGGGGCTGCAGCCTGGCCAGAAAA
TCGTGATTCCGAAACGAGGGCCGACGGGGTAAATGAGCGCAGAGAATGAG
AGCAGAAAGGGCAGTAGCGAGGGTAAGCACACAGAGGAGGTTAGCATAGA
GGACGGGAAGAGGAAGAAAAAGCGACACCGGCATGAGAGCGAGGAGGAGG
AGAGGCGGCTGGTGAAAGCGGCCAAAAAGTATTTGGAGAAACATGGCGGA
GGCGGACACGAAGAAAGGAAGACAAAAGCTGATAGAAAAGAGGAGAAGCA
CGAGAAACATCACAAGAAATCCCACGACAAGAAAGCAAAGAAGAAGAAAA
AGGAAGGGAGGGACGAGGAAAAGGACGCAGAATTAGAGAAAAGCCCTCCT
GCACGAGCTATTCCAGAGGTGCTGAGCGCGGAGGATGACTACTACCGTCG
CCAGGCAGAGTTCAGGGTGTGGCTGCGACTGATCCGGAAATTGAACTTTG
AGGACCTTCCCCGTGAGGAAGCTCAAGACCAATTTGCGCGTTTCGTCGCT
CTCTGGAACCAGGGTCGCCTGCCCGACATGTACTACGACGGCGTCCCGGT
CCACATGCAAACGGAGGCCCACAAAACCACCCATACCTGGGGTTTTGCGG
CGAAGATGAGTGAGGACGAGAAGGACGCCTTGGACCGGATGGCCAACAGC
ATTGTCCGGAGCAGCACGGCGCCCCCCGGGGCGGGGAAAGCTGGAGGAGA
CGGCGTCAAGAATAGAAACGGGGCTTCCGCGGCCGCAAGCAGGATGGGGG
GGGAAGGTGGGAACGGGGTTGGCTCAACGAGAAGTCAGCCGCAGCTCTCT
CAGAGGGACTCGACGAGGGCAGGACCCAGTAGTGCCTTCGAAGAGGCGTA
TGCCAAGCCCACAGGTCGGGAGGCTGTGTTGGCGGCGCGACATGCGAAAG
GTGAGCGGCTGCATGGGGCTGCCCGGGCGAAGGAGGAAGGGAGGGATGGC
CTGGACATGCCAGAGGAGGCGCTGGGCTTGGGAGAGAGGGACACGGAGAA
GGAGGAGGTCAGACGGCGGCAGGCTCGGCAGAATACACGCGTCAATCAAC
GGCAGACGGAGCAAGAAAGGCGGATGGAGGAGGCGGCGAGGAAGGAGAAG
GACGCGATGCAGAAGCTAATGGACACGTTGGGGCTGCAGCCTGGCCAGAA
AATCGTGATTCCGAAACGAGGGCCGACGGGGTAAATGAGCGCAGAGAATG
AGAGCAGAAAGGGCAGTAGCGAGGGTAAGCACACAGAGGAGGTTAGCATA
GAGGACGGGAAGAGGAAGAAAAAGCGACACCGGCATGAGAGCGAGGAGGA
GGAGAGGCGGCTGGTGAAAGCGGCCAAAAAGTATTTGGAGAAACATGGCG
GAGGCGGACACGAAGAAAGGAAGACAAAAGCTGATAGAAAAGAGGAGAAG
CACGAGAAACATCACAAGAAATCCCACGACAAGAAAGCAAAGAAGAAGAA
AAAGGAAGGGAGGGACGAGGAAAAGGACGCAGAATTAGAGAAAAGCCCTC
CTGCACGAGCTATTCCAGAGGTGCTGAGCGCGGAGGATGACTACTACCGT
CGCCAGGCAGAGTTCAGGGTGTGGCTGCGACTGATCCGGAAATTGAACTT
TGAG

Synonyms

Publications