rna8108, rna8108 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8108
Unique Name	rna8108
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	814
Alignment location	KK037247.1:589164..592128 -

Link to JBrowse

Properties


Property Name	Value
Product	tryptophan synthetase
Orig transcript id	gnl\|cribi\|Naga_100155g8.10222.mrna
Orig protein id	gnl\|cribi\|Naga_100155g8.10222
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:589164..592128 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100155g8	gene7852	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22581.1	cds8086	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8108	rna8108-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:589164..592128-
coding sequence from alignment at KK037247.1:589164..592128-

mRNA sequence

>rna8108 ID=rna8108|Name=rna8108|organism=Nannochloropsis gaditana|type=mRNA|length=814bp
AAAGTTGTATGAATGGATTCGAGCCGACTGAATGGAGACGATAAATGATA
AGAGAAGAAGCTTCGCCATTATCGCGCCCGATCATAAGTCTTCGCAGTCC
TGTTTCAGATTGCAGCGTTACGAGAGGAAAATGACCAAGAGGCTAAGTCG
CACAAGCCTGTCAGATTGCAGACGTACAGTGGGAGCCCCTGGTGTTGGTC
TCACCGTCGGCGTGCACGAAACTCTTACAGATCCACACAAGCGATAGGTG
CGAACAGGGTATGGCCGGCCGGAATGCCCACTCTTCGTCGTCAATCCCTC
CCCAGGCTGTGGCTGCTTCCAAGCAAGGAAAAGGCCTACGAAATGATCTC
GTAAAAATGGTCTACGGATACGGAGACGAGAAACAACCAATGCAGGAGTC
CGTAGATCTCTTAGATGATTTAGTGAAGGAGTACCTCGAGGAGATGTGCC
GCCAGGCCTGCGAGGTCGCCCGCCTCGGCCGGCGAGATGTCCAGACAAGC
GATTTCATTTTTCTGATCAGGAAAGACGGCCGACGGTACAAACGGATGAA
AGATTTGCTGGAAGCTGACGAAGAGCTGCGGGACGCCAGAGACCCCAAAG
TGAAAAAAATGACAGAGACTTAGGCGAAAAAACAGGAGAGGCGTGCAGCA
AGAAATTTAGAGGTTTTTTCCAGGGGCAACTCAGCTTTTGTACAGCTACT
TGGAGCAAAATAATCTATAATGTGGAAATGCCACAACTATGAATGTAAGG
ATGCGGCGAGTAAATATTTCAAAAAGAAGTGTGTCGCGCGAGACGTCTAT
AAACCACACAATGG

protein sequence of rna8108

>rna8108-protein ID=rna8108-protein|Name=rna8108|organism=Nannochloropsis gaditana|type=polypeptide|length=745bp
MHGARFTFALATSSLFILLVICLLPLQSIAFAVHTPHRSPQSPRAHMSKT
NDRGSVQLVQAFEKARSKGTAALVAFITAGYPNRGDTVPLLLALEAGGAD
IIELGVPFTDPQADGTTIQRASEVALRNKVRLPDCLEYIKSARAQGLTVP
VVLMGYFNPFLNYGSERLMDDMVAAGGDGFIVVDLPPEEGALFIKHCQSR
ALSYVPLLTPTTADHRLAYLAASAGSFCYCVSLTGVTGSRSDVPVDLKDF
VARIRAVTDKNLAVGFGISTPTHVAQVAALADGVVVGSAILHAIDSAGPQ
SDTQARAAKVQAFIAELKGGAQKPGAAGDAGRVTHNGEGNGKAVAEDRDV
SHRHFGEFGGRYIPETLVEAHRELEEAYEAALKDPAFQEEVAFYRKQYIG
GPTPMYHAKRLTEAVGGAQIWLKREELAHTGAHKINNAVGQALLAKRLGK
QRIIAETGAGQHGVATATVCALMDMECIIYMGAADCERQALNVFRMKMLG
AKVVPVESGSRTLKDAINEAMRDWVTNVKTTHYLIGSAIGPHPFPTIVRD
FQSIIGSEARAQIVEMTGKLPEVVVACVGGGSNAIGMFHAFRNDASVRLV
GAEAGGEGLDGKNSATLSMGRPGVLHGTRTYLQQDIDGQILETHSISAGL
DYPGVGPEHAFLKDSGRATYVAVTDQQALEGFKMLCKTEGIIPALEPSHA
LFTAMEEAKKLPKEATVLMNLCGRGDKDMITVAKALGVNLDNIFK

mRNA from alignment at KK037247.1:589164..592128-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8108 ID=rna8108|Name=rna8108|organism=Nannochloropsis gaditana|type=mRNA|length=2965bp|location=Sequence derived from alignment at KK037247.1:589164..592128- (Nannochloropsis gaditana)
TGTTGAACGGGTGGCATTACCGGTTGATTTACGGATGTCCATCTAGCTTG
TCCGTCATCTTAGGGTCCAACCCCCATACCCACCGATATTTCGATCTGAG
AGCTTAGACATTTCCTTCCTTTGCATTGTACAGTGTATGCACGGCGCGAG
ATTTACATTTGCACTCGCGACCTCTAGCTTGTTCATTCTCCTGGTAATTT
GCCTGTTGCCCCTGCAATCCATCGCCTTTGCCGTCCACACACCTCACCGT
TCTCCGCAGTCACCAAGAGCACACATGTCCAAGACTAACGACCGAGGCAG
TGTGCAGCTTGTACAAGCCTTCGAAAAGGCCCGGTCAAAAGGCACGGCAG
CCTTGGTCGCATTTATCACGGCTGGTTATCCCAACCGCGGAGACACAGTA
CCACTTTTGCTCGCTCTTGAAGCCGGTGGTGCCGACATAATCGAGTTAGG
CGTTCCTTTCACCGACCCTCAAGCCGATGGCACCACCATTCAACGCGCTA
GTGAGGTCGCCTTGCGCAACAAAGTGCGTCTGCCAGATTGTTTGGAGTAC
ATAAAGTCGGCGCGGGCACAGGGCCTCACGGTCCCGGTGGTTTTGATGGG
CTATTTCAATCCCTTCCTCAACTACGGTTCAGAGAGACTCATGGATGATA
TGGTGGCTGCTGGCGGGGATGGCTTTATTGTGGTCGATCTGCCTCCGGAA
GAAGGGGCTCTCTTTATCAAGCATTGCCAATCTCGCGCCCTGTCCTACGT
CCCTCTCCTGACCCCGACCACCGCCGACCATCGTCTGGCCTACTTGGCCG
CCAGCGCAGGCAGTTTCTGCTACTGCGTCTCTCTCACGGGGGTGACGGGG
TCACGGAGCGACGTGCCTGTGGATCTGAAAGATTTCGTGGCGCGGATACG
GGCGGTGACGGACAAGAACCTGGCGGTGGGATTTGGGATCTCGACACCGA
CCCATGTGGCTCAGGTCGCGGCCTTGGCCGACGGCGTCGTGGTGGGGAGT
GCGATTTTGCACGCGATCGACAGCGCGGGTCCTCAGTCCGACACACAGGC
ACGCGCCGCCAAGGTGCAGGCTTTCATCGCGGAGCTTAAGGGGGGTGCGC
AGAAGCCGGGGGCGGCGGGAGATGCGGGCCGGGTCACGCACAACGGGGAA
GGGAACGGGAAGGCGGTGGCGGAAGATCGTGACGTCAGCCATCGGCATTT
CGGTGAATTTGGGGGTCGGTACATTCCGGAGACGCTCGTGGAGGCGCACA
GGGAATTGGAGGAAGCTTACGAGGCGGCGTTGAAGGACCCAGCTTTCCAG
GAGGAGGTGGCTTTCTACCGGAAACAGTACATCGGGGGGCCCACGCCTAT
GTACCATGCCAAGCGACTGACGGAAGCGGTGGGCGGGGCCCAGATTTGGT
TGAAACGCGAGGAGCTGGCGCACACGGGCGCGCACAAAATCAACAACGCG
GTGGGGCAAGCCTTGTTGGCCAAGCGGCTGGGAAAGCAGAGGATCATCGC
AGAGACGGGGGCAGGTCAACACGGTGTGGCCACCGCGACCGTCTGTGCCC
TAATGGACATGGAATGCATCATCTACATGGGGGCTGCGGATTGCGAGCGG
CAGGCCTTGAACGTGTTCCGGATGAAGATGCTGGGGGCCAAGGTGGTACC
GGTCGAGAGCGGGAGTCGGACGTTGAAGGACGCGATCAACGAGGCGATGC
GTGACTGGGTCACGAACGTGAAGACGACGCACTACTTGATCGGGAGCGCC
ATCGGGCCGCACCCTTTCCCGACCATCGTCCGGGACTTCCAATCCATCAT
TGGCAGCGAGGCCCGTGCCCAAATTGTGGAAATGACGGGCAAACTACCCG
AGGTAGTGGTGGCCTGTGTGGGGGGAGGGTCCAACGCGATCGGCATGTTC
CACGCCTTCAGGAACGACGCCTCGGTGCGCTTGGTGGGGGCGGAGGCGGG
CGGGGAGGGACTGGATGGAAAGAATTCGGCGACCTTGAGCATGGGCCGCC
CGGGGGTCTTGCACGGCACCCGGACCTACCTGCAGCAGGACATCGATGGG
CAGATTTTGGAGACGCACTCCATCTCGGCGGGATTGGATTACCCGGGTGT
GGGGCCGGAGCACGCGTTCCTGAAGGACTCGGGGCGGGCGACTTACGTAG
CTGTCACGGACCAGCAGGCCTTGGAAGGGTTCAAGATGCTGTGCAAGACG
GAGGGGATTATCCCTGCCCTAGAACCCTCGCACGCGCTGTTTACAGCCAT
GGAGGAAGCGAAAAAATTGCCCAAGGAGGCCACGGTGCTGATGAATTTGT
GCGGGCGGGGCGACAAGGACATGATTACGGTGGCCAAGGCACTGGGGGTC
AATTTGGACAACATCTTCAAGTAAGAAGAGACGCGTGGGGAAGGGCAGAT
GCCAGGAGGGGTTGGAAGGGACCGCGTCTGCCAAGGCATGATCGCCTCTG
TTTTACGAGCTTGACAGCGAGAAGGTCGATGGCAGAAGAGAGAATTCGTT
AGCATGCAGGGAGGATGGAGAGACCCGCCGTCGCAACATGCTACCCAGCG
ACGTCCAGGGGCGGTAGAGAGGAGAGAGTATGCCTTTGACATGACAGATA
ACCACTGGAAGTCCGAGTCGGGAAGAATACGTCGCCTTCACGCAAGCCTT
GAGGCCCGCAACATCGTGCAGCGTCGATTAGGAGGTTGTCAGATGATATA
AGAGTACTAGATAAGCTGAAGTCCCGTGGCATTTGAGCGTCAAGAAGTAT
GAAAAACTTAGACGACCAGGTCTAGCAAGGGGTTGGGCCCTACCTCCATT
GTGTGGTTTATAGACGTCTCGCGCGACACACTTCTTTTTGAAATATTTAC
TCGCCGCATCCTTACATTCATAGTTGTGGCATTTCCACATTATAGATTAT
TTTGCTCCAAGTAGCTGTACAAAAGCTGAGTTGCCCCTGGAAAAAACCTC
TAAATTTCTTGCTGC

Coding sequence (CDS) from alignment at KK037247.1:589164..592128-

>rna8108 ID=rna8108|Name=rna8108|organism=Nannochloropsis gaditana|type=CDS|length=2238bp|location=Sequence derived from alignment at KK037247.1:589164..592128- (Nannochloropsis gaditana)
ATGCACGGCGCGAGATTTACATTTGCACTCGCGACCTCTAGCTTGTTCAT
TCTCCTGGTAATTTGCCTGTTGCCCCTGCAATCCATCGCCTTTGCCGTCC
ACACACCTCACCGTTCTCCGCAGTCACCAAGAGCACACATGTCCAAGACT
AACGACCGAGGCAGTGTGCAGCTTGTACAAGCCTTCGAAAAGGCCCGGTC
AAAAGGCACGGCAGCCTTGGTCGCATTTATCACGGCTGGTTATCCCAACC
GCGGAGACACAGTACCACTTTTGCTCGCTCTTGAAGCCGGTGGTGCCGAC
ATAATCGAGTTAGGCGTTCCTTTCACCGACCCTCAAGCCGATGGCACCAC
CATTCAACGCGCTAGTGAGGTCGCCTTGCGCAACAAAGTGCGTCTGCCAG
ATTGTTTGGAGTACATAAAGTCGGCGCGGGCACAGGGCCTCACGGTCCCG
GTGGTTTTGATGGGCTATTTCAATCCCTTCCTCAACTACGGTTCAGAGAG
ACTCATGGATGATATGGTGGCTGCTGGCGGGGATGGCTTTATTGTGGTCG
ATCTGCCTCCGGAAGAAGGGGCTCTCTTTATCAAGCATTGCCAATCTCGC
GCCCTGTCCTACGTCCCTCTCCTGACCCCGACCACCGCCGACCATCGTCT
GGCCTACTTGGCCGCCAGCGCAGGCAGTTTCTGCTACTGCGTCTCTCTCA
CGGGGGTGACGGGGTCACGGAGCGACGTGCCTGTGGATCTGAAAGATTTC
GTGGCGCGGATACGGGCGGTGACGGACAAGAACCTGGCGGTGGGATTTGG
GATCTCGACACCGACCCATGTGGCTCAGGTCGCGGCCTTGGCCGACGGCG
TCGTGGTGGGGAGTGCGATTTTGCACGCGATCGACAGCGCGGGTCCTCAG
TCCGACACACAGGCACGCGCCGCCAAGGTGCAGGCTTTCATCGCGGAGCT
TAAGGGGGGTGCGCAGAAGCCGGGGGCGGCGGGAGATGCGGGCCGGGTCA
CGCACAACGGGGAAGGGAACGGGAAGGCGGTGGCGGAAGATCGTGACGTC
AGCCATCGGCATTTCGGTGAATTTGGGGGTCGGTACATTCCGGAGACGCT
CGTGGAGGCGCACAGGGAATTGGAGGAAGCTTACGAGGCGGCGTTGAAGG
ACCCAGCTTTCCAGGAGGAGGTGGCTTTCTACCGGAAACAGTACATCGGG
GGGCCCACGCCTATGTACCATGCCAAGCGACTGACGGAAGCGGTGGGCGG
GGCCCAGATTTGGTTGAAACGCGAGGAGCTGGCGCACACGGGCGCGCACA
AAATCAACAACGCGGTGGGGCAAGCCTTGTTGGCCAAGCGGCTGGGAAAG
CAGAGGATCATCGCAGAGACGGGGGCAGGTCAACACGGTGTGGCCACCGC
GACCGTCTGTGCCCTAATGGACATGGAATGCATCATCTACATGGGGGCTG
CGGATTGCGAGCGGCAGGCCTTGAACGTGTTCCGGATGAAGATGCTGGGG
GCCAAGGTGGTACCGGTCGAGAGCGGGAGTCGGACGTTGAAGGACGCGAT
CAACGAGGCGATGCGTGACTGGGTCACGAACGTGAAGACGACGCACTACT
TGATCGGGAGCGCCATCGGGCCGCACCCTTTCCCGACCATCGTCCGGGAC
TTCCAATCCATCATTGGCAGCGAGGCCCGTGCCCAAATTGTGGAAATGAC
GGGCAAACTACCCGAGGTAGTGGTGGCCTGTGTGGGGGGAGGGTCCAACG
CGATCGGCATGTTCCACGCCTTCAGGAACGACGCCTCGGTGCGCTTGGTG
GGGGCGGAGGCGGGCGGGGAGGGACTGGATGGAAAGAATTCGGCGACCTT
GAGCATGGGCCGCCCGGGGGTCTTGCACGGCACCCGGACCTACCTGCAGC
AGGACATCGATGGGCAGATTTTGGAGACGCACTCCATCTCGGCGGGATTG
GATTACCCGGGTGTGGGGCCGGAGCACGCGTTCCTGAAGGACTCGGGGCG
GGCGACTTACGTAGCTGTCACGGACCAGCAGGCCTTGGAAGGGTTCAAGA
TGCTGTGCAAGACGGAGGGGATTATCCCTGCCCTAGAACCCTCGCACGCG
CTGTTTACAGCCATGGAGGAAGCGAAAAAATTGCCCAAGGAGGCCACGGT
GCTGATGAATTTGTGCGGGCGGGGCGACAAGGACATGATTACGGTGGCCA
AGGCACTGGGGGTCAATTTGGACAACATCTTCAAGTAA

Synonyms

Publications