rna8105, rna8105 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8105
Unique Name	rna8105
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3481
Alignment location	KK037247.1:579840..580430 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100155g13.10226.mrna
Orig protein id	gnl\|cribi\|Naga_100155g13.10226
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:579840..580430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100155g13	gene7849	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8105	rna8105-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22585.1	cds8083	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:579840..580430+
coding sequence from alignment at KK037247.1:579840..580430+

mRNA sequence

>rna8105 ID=rna8105|Name=rna8105|organism=Nannochloropsis gaditana|type=mRNA|length=3481bp
CGAGGTACCAGCTAATGTACTACCCATGCATGACAAAATAAAAAATTTCG
CTGGGTGAGGGCAATCGACGTAGCATTTTATCGCTCATATTAATTGATGA
CTCTAAGCGGAGATGATCATAGCCATTTCATTTCGTTGAGCACAAAAGCT
GCTTTAAACACTGTCATCATCATCGGAGACAACTCCTAGTAGGTCTACAG
GTACCTTCTACTGCCCGACGCGTGATAACTATATGGAAACTTGGGTTCGA
GTGAAGATATCCTGGGGTCTCGGCGTATCATTTTCAACAGTTAATTCTTG
CTGAGAGAGATCGTGATCGCACAATTGCAGTAATTGAGCACGATCGATGG
TTGGTTGATTTTTTTAAACTCTGTTTCAAGAATGCATTGGAGTAGATTCG
CCCCCTAAAGCATGTACACTTGAATGATGAAACTCAATTCAATAGCTCGC
CACAAGCAGAATGGCTTGATGGCACACTCATGAAATTATGAACATTGTAA
CCTGGGGGTTATGTCTTTAAAGGGTTAAGATGTGAAGCTGCTCGGTCCTC
GTACAGAGTTTTCCAACCAAGGATGCGAATGATATGAGGAGCCTTGCAAT
ATTAAGGGCCTATAATTCATTTAACGCCCGATGTCCCAAACTACACGTGA
CATGCAGGTCTTAATAGGTGAGACCATGCAAACAGAGGTAAATGCCCTTC
AAGACACTGGCACGATATTCTCACCATTGCCCAGGATATCAATCCTTTCC
TTTTGCCTCCTACTATCAATATTTCCTCGAGGAATTGCTGTAAAACAGCC
TGTAGATTTTCCGCATGATACCCTGGTGGCCCCTGGATCTCTAAGTGTTG
GCTTGAACACGACTATAAATGGCAGCCTCGACATTGGCTACAACTCTTTT
GTTGGTGGCCTGAGCACAGTCTCGTATGCACGGGTCCTTGACACAGGTTT
TCAAGGCGTAGCCGGTCTTTTTGTGGACAAGGATGCTCACATCGTTGGAA
ACTTGGTCACGAATGGCAACGTCAGCTTGAGCTCCAGCGTGCAAGTCTCG
GAGGCAGGCTTGGCCGTCGCTGGACAAGTGAACACGTCCAAAGAAATGTG
GTGCCAGGGAACCATATGGGCTCAGAGAGATCTTGTGGTGGAGGGAAATG
TGATTGTTGGTGCAGGGAGAGGCAAGCTGGAAGTATTTGAGCTGGCATCT
GTCCGGTCGCTCCAAGCGCGTGTCGATGCGACGATGGAGGGGTACACGCA
TTGCGTTGGGACGACGACCTTCGGGACATCGCCCTTGATGGGACTCGCTC
AGAATGTCCGTCCACCCGGGATACCTGGGAAGACTCCTGAAATTGCGGGG
GTCACGCAGTTCGTAGCCGGCCACGAGGGAAATTTCTCAACATTACGTGG
GTATTGGGACATGCGGAGAGGCACTCAGTTGAACAGCGACATGCCCCTCC
TGCTAGGTCTTAACAAGTCTCTGACTGGCATGTTGCTGCTGGAGGGAGGC
GCCCTTCCCGCTAGCCTTCCAACCGTCAGAGCTGACTCAATCCCGATGAA
AGGAAACTACAACTTGAATGAGCTTGATGCTGGGTACTCCGCGCCTGTCG
TGGAGGTAGGGGACGGGTTCAACGATACCGTCAACAGCATGGTCCTAGAT
GGTGAAGGCGTAGGCGGGCAAATGTTCTTTACCGACTCATCTTTGGGGGT
GGCAACAATAGCCATGGACGGTAACCAGGCCTCTCTGGTGCTAGGATTGG
GCCTGTCACAAGGTTTCGCGCCACTCCAGAGCTATTGCACTAGTTCCGAT
AATCAAACTTCTGCATGCGAGCAGCAGACGGGAGGATTGTCATTTTTCAC
GGGGTTTCCCTGGTCCAAAACGTCGAGCGCTCAGGTGTTTCAGGCTGCCT
ACGGAAGAGTGCGTGGGAGTTACCGTGAGTCACCGGGAGATGTCAACATC
ACAGGTCCTTACCTGACAGTGGACAAGCCCTGGCTGATCTCTCCGTCATT
TCCCGAGGGTGAGAGCCCTTCGCCAGGTGCTTTGACAGTCGTAGGAAATA
CGTCTTTGTACGGCAACTTTTTCTTGAAAGCTACAACGATGTTTACGGAG
ACGACAGGTGCCATCGCTTTTGAGGCGGCTACAACCCTTTCAATGGCGTC
AGGAGATGAGACCGATATCAAAGCTAGTCGGCTGCAAATCACAGCTCCTA
CGAATATAACAGGAACCCTGGGAGTATCTGGGAACACGTTGTTGGATGAA
AATCTGGAAGTACGGGGAACCGCAACTGTGGACGGCGCCTTCTCGGCCAA
GAGTGCAGCGAATGTGGGAGGCGTACTCACCGTCACCGGAGAGACAACAT
TACAGAGTTCATTATCAGTGGAGGGTGGCGCGAATGTAGTGGGTAGCTTT
TCAGCGGAGGGCGAGGCCAACGTCGCAGGAGGTTTGTCGGTCGAAGGTGG
TCTTGAAGTTGCAGGTGATACGGTTTTAGCAGCCATGCAGGCTGGCGATA
TTGCGGTCGGTTACATTGAGGCCCTTGGTTGTTTCGAATGTACGCCGTTA
CGACGACGACGGCGTCTTGCGGGTAGCAACGAGAGCGACCACAACGAGAA
AGGCGGGGCACAAAGGCGCCGCCTGGCTCCCTCCTCTGCCATTCTTTACA
AGACCAGCGATGACGAGGCAGAGGGAGAGGAGGAGCGCCTAGGCTTTGTG
GGGCCGTACTTCACGATGGGGAATGCATTGCACGTCGTGGCCGATGTCGA
GGCAGGACACAATGACCACCTAGGGCTTGTAGTGGATGGTGCTACGCGTC
TGTATGGTGACGTGGCGGTGCTGAATCCCGTGGGAGAGAACGAGGTCTTT
CATCTCAGCACAGACAAGGCCTCTGTGCAAGTGCCGATGCAGACATCATC
GCTCGTCGTGGAAGGAGACTTCTCGCTTCGAGGAATATCGAGCACGGCCT
TTGACGGCGTGGTGTACGGCGTGGTGCCGCACAATCGCTGCAGTCTTCCC
GGCACAGACGACGGGAAAGTTGCGTACGGATACTTGGCTCGGCCAGAGCC
CCTGCAGTCCGTGCACTCCCTCCTCTGCTTCAACACGGGGAGCGGCATGG
AGTGGCGAGCGGTGGGCGGGTCGGCACCTCTGGGCGGTGCTAGTGGGATG
TGATGATCGGCAGGCTTACACTAAGGCAAGGGTAACGACGGGAGTAGGAG
CGCATAAAGGAGGCCGTGTGTAGAAATGTTGATGTTATAGCGCAATCGGG
AATATTGCATGATGCATGTCTGCTTGGCCAACCATCATGGGGGATTAAAA
ATGCAGGCTCTGATAGCTTGCACTGAGCACAGGCGTTGCCACCTATAATC
ACAACGCGAACCTGCGAGAAAGAATGTGATACAAGATGGCGGGCTACACC
CAGTCCGAGGACCATGCGCTACAAAGCCTACGGTGGGACGATAAAGACAA
TTACGGGACTCCATATGTTCTTTTCAATCGA

protein sequence of rna8105

>rna8105-protein ID=rna8105-protein|Name=rna8105|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
MGNALHVVVDVEAGHNDRLGLEVDGATRLYGGLAVLNPVGENEVFHLITE
KASVQVPMHTSSLVVEGDFSLRGISSTAFDGVVYGVAPHNRCSLPGTDDG
KVAYGYLARPEPPAVRALPPLLQHGERHGVASGGRVGTSGRC

mRNA from alignment at KK037247.1:579840..580430+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8105 ID=rna8105|Name=rna8105|organism=Nannochloropsis gaditana|type=mRNA|length=591bp|location=Sequence derived from alignment at KK037247.1:579840..580430+ (Nannochloropsis gaditana)
ATGGGGAATGCATTGCACGTCGTGGTCGATGTCGAGGCAGGACACAATGA
CCGCCTAGGGCTTGAGGTGGATGGCGCTACGCGTCTGTACGGTGGTTTGG
CGGTGCTCAATCCCGTGGGAGAGAACGAGGTCTTTCATCTCATCACAGAA
AAGGCCTCTGTGCAAGGTACGTTTGGGAGTCCTCCGTGAGGCATTCCGAG
ATCTGTCTAACTCACTGTGCATCTAAGTACTCGTGTTATCTGCACAGTGC
CGATGCACACGTCATCGCTCGTCGTGGAAGGTACGCAAAGCGAGAATAGA
TCGGGATGTTGCACGCCTTCCTATGAGCTTATGTATCTTATCCTGGTATG
CGCACACGCAGGAGACTTCTCGCTTCGAGGAATATCGAGCACGGCCTTTG
ACGGCGTGGTGTACGGCGTGGCGCCGCACAATCGCTGCAGTCTTCCCGGC
ACAGACGACGGGAAAGTTGCGTACGGGTACTTGGCTCGGCCAGAGCCACC
TGCAGTCCGtgcactccctcctctgcttcaaCACGGGGAGCGGCATGGAG
TGGCGAGCGGTGGGCGGGTCGGCACCTCTGGGCGGTGCTAG

Coding sequence (CDS) from alignment at KK037247.1:579840..580430+

>rna8105 ID=rna8105|Name=rna8105|organism=Nannochloropsis gaditana|type=CDS|length=1287bp|location=Sequence derived from alignment at KK037247.1:579840..580430+ (Nannochloropsis gaditana)
ATGGGGAATGCATTGCACGTCGTGGTCGATGTCGAGGCAGGACACAATGA
CCGCCTAGGGCTTGAGGTGGATGGCGCTACGCGTCTGTACGGTGGTTTGG
CGGTGCTCAATCCCGTGGGAGAGAACGAGGTCTTTCATCTCATCACAGAA
AAGGCCTCTGTGCAAGTGCCGATGCACACGTCATCGCTCGTCGTGGAAGG
AGACTTCTCGCTTCGAGGAATATCGAGCACGGCCTTTGACGGCGTGGTGT
ACGGCGTGGCGCCGCACAATCGCTGCAGTCTTCCCGGCACAGACGACGGG
AAAGTTGCGTACGGGTACTTGGCTCGGCCAGAGCCACCTGCAGTCCGtgc
actccctcctctgcttcaaCACGGGGAGCGGCATGGAGTGGCGAGCGGTG
GGCGGGTCGGCACCTCTGGGCGGTGCTAGATGGGGAATGCATTGCACGTC
GTGGTCGATGTCGAGGCAGGACACAATGACCGCCTAGGGCTTGAGGTGGA
TGGCGCTACGCGTCTGTACGGTGGTTTGGCGGTGCTCAATCCCGTGGGAG
AGAACGAGGTCTTTCATCTCATCACAGAAAAGGCCTCTGTGCAAGTGCCG
ATGCACACGTCATCGCTCGTCGTGGAAGGAGACTTCTCGCTTCGAGGAAT
ATCGAGCACGGCCTTTGACGGCGTGGTGTACGGCGTGGCGCCGCACAATC
GCTGCAGTCTTCCCGGCACAGACGACGGGAAAGTTGCGTACGGGTACTTG
GCTCGGCCAGAGCCACCTGCAGTCCGtgcactccctcctctgcttcaaCA
CGGGGAGCGGCATGGAGTGGCGAGCGGTGGGCGGGTCGGCACCTCTGGGC
GGTGCTAGATGGGGAATGCATTGCACGTCGTGGTCGATGTCGAGGCAGGA
CACAATGACCGCCTAGGGCTTGAGGTGGATGGCGCTACGCGTCTGTACGG
TGGTTTGGCGGTGCTCAATCCCGTGGGAGAGAACGAGGTCTTTCATCTCA
TCACAGAAAAGGCCTCTGTGCAAGTGCCGATGCACACGTCATCGCTCGTC
GTGGAAGGAGACTTCTCGCTTCGAGGAATATCGAGCACGGCCTTTGACGG
CGTGGTGTACGGCGTGGCGCCGCACAATCGCTGCAGTCTTCCCGGCACAG
ACGACGGGAAAGTTGCGTACGGGTACTTGGCTCGGCCAGAGCCACCTGCA
GTCCGtgcactccctcctctgcttcaaCACGGGGAGCGGCATGGAGTGGC
GAGCGGTGGGCGGGTCGGCACCTCTGGGCGGTGCTAG

Synonyms

Publications