rna8103, rna8103 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8103
Unique Name	rna8103
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2116
Alignment location	KK037247.1:565941..566923 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100483g1.5225.mrna
Orig protein id	gnl\|cribi\|Naga_100483g1.5225
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:565941..566923 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100483g1	gene7847	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8103	rna8103-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22592.1	cds8081	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:565941..566923-
coding sequence from alignment at KK037247.1:565941..566923-

mRNA sequence

>rna8103 ID=rna8103|Name=rna8103|organism=Nannochloropsis gaditana|type=mRNA|length=2116bp
GATGGTGGTGGGCAATGCCACGACACTGACGTCTCCCTTCGTATCGCATT
TCTCGGACGTGACGTTGGTGGAGAGCAGTGAGAGCATCACGTGGCGAACG
GGGAATGCCAGCCTCTCTGCCGATGCGGTTGCGATTGACAGCAGCGAGAC
CCTGGAGATGGTGGTGGGCAATGCCACGACGCTGACGTCTCCCTTCGTAT
CGCAGTTCTCGGACGTGACGTTGGTGGAGAGCAGTGAGAGCATCACGTGG
CGAGCGTCAAATGCCAGTCTTTCATCCACCATTCTTGACATCCGCAATCA
AAACACTACCATTATGGCCTACAATGAGATAGAGATCGTGTCACCATCGA
TCGATATGGTGGGTGTCGTCACTCTGGGAAACGAGACTACGACTGGGCAG
CTTGTCATACTGAACGGAGTTCGATCTGATTTGATGGAGACAATAACAGC
GGATGGCACCACAGGAGAGCTTTCATCTGTCAGCATGGTTACAGGCGATC
TGGTGGCCACGCGCCTGCTTCCTGGGACGGCTGCGAACGGGAGTATCACA
GCGAACAATCTCGTGTTGGAATATGACAGCGGATTGCCCGAGCCTTCGCA
GATTACGTCAACTATCGGCACCGATCAAACAGGGACCACAGTCCTCTCCA
ACGGCGTGCAAGTGGGTGCCAACAGCACCGCACAACTGACAGCAGGGGTC
GTCGCTTTCACAGGATTAGCGGTGCAAGCGACTGGCATGCCTTCGTCTTT
CTCGACGTTGAGCAGAGCGGACTGTACGGACCCAATCAATCCCTGTTCGC
TTACACTCACTGGGTCAGGCCCTGGCGTATATGCGTTGGGGATCAATCTA
CCGAACATAGGTAACGCAATCCCAGAGGTGTACGTAGACAATATTTTCTA
CGAGGATAGTACACCGCCCAATACAGGTGAGATGATCTTCCTATATCAGT
CAGGGTCCACGCCCGTCAATTTTGTCGCCAACACGGGCGGCAACATTGCA
GGATCAATGCCTTTAAACGTGACGAAGACACTGCAAAGCGGCGAATTCAC
AATGTTTCTCTTCGTTGCCAGTGAATGGAGTGCTTTCGCTTAGCCGTACA
TTCGCTAAAGAGAGCCACGTCAGGCCCGTCAACTTGACAAGCCTTCCGAG
GCATTCTTCCAAATTCACCTATTAATATAATAGTATAATCTTTCGACTGC
TGATGGTTCAGGGGGGATCATCAAGGTGAAAGAGAAAAGGACAGAGCAAG
AGGAAAATGGGTTTCGAAGACGTCAGCTGGAAGCTAATTTGGGCGGATGA
GGTGGTCATTTCAGTCTAGTTACTGTCAGCGAATGCAGTGCTTTTGCTTA
GCTATATAGTCCCTTTAGAGAGCCATAGCAGGCCTGTCATATTGGTGACA
GGCCTGGAGAGGTATTTTTCGATGTCTTTTTTTAATTAAATCGACCGAAT
ACCGATGATTCAATGAAGATCATCGGAACAAGGCCCGAAGGACAGAAGGA
GAGTCAAAAGGGTTCGGGGCGTGAACTTTGAGACAATATGGACGGACTCG
GAACTTATTTCAGACAAGGCAGGCTTATTCAAGTAATCAGGAATCAGGAC
TCGAGAGTCTGGCCAGGGCGAATGATGCGCAAGCCCAAATACGCCTTGGT
GTTTTGTCAATGTGCGTTTTGTAATTGAGTAGGGAAGCTGCTCCCGACTC
TAACCCTAACATGTGTACCGAGTGAGTACCAATCCCTCCTAGGTCAACGC
TGGTATAGACTTTACCCTGAGCTTCAGACGACGGTTCTATCTATGGTTGT
GTATGGCTCCTACTCTTTCTCTCATGGTCAAGTTCAAACTAATCCCTTTC
AGCCGTTCCACTACTCTCAATCCTTCGCTCGTGGGCTTTTCTCAGCCGCG
GCGACTACATCATTTATTGCCCTTTCCATGTTTTCCAACCCAATCTGTAA
CCTCGCCCTTGGACAGCCAAAATTGATTCTCACATGATGGAATACGCCAA
AATCCCGCCCATCCGATACTGCGACTTGAGCATTCTCTAAAAAAAACGTG
GCTGCTTCTACGCCTTGGCTCAAGTAAGGAGCTAATGCCGACGTGTCAAC
CCACAATAGATAGGTC

protein sequence of rna8103

>rna8103-protein ID=rna8103-protein|Name=rna8103|organism=Nannochloropsis gaditana|type=polypeptide|length=281bp
MEVRNVLDDSHEAFDCYSFICIRICVFHEAVASNFTGAGMSVTNSVKVGT
GFELQSGPFMATTDNFDVQSDDITMSYSNSFQLSVTSGTAMRAGDISLSE
AAAQIYTEPGVLRLSTGAATFAMAARGPLSVLQTKADVYEQVADEWSLNS
GGDIDVTSNGTLSMQSVSGDLTFDELQVETDTFAIESVDILVDSSETLEM
VVGNATTLTSPFVSHFSDVTLVESSESITWRTGNASLSADAVTIDSSETL
EMVVGNATTLTSPFVSHFSDVTLPLCRCGCD

mRNA from alignment at KK037247.1:565941..566923-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8103 ID=rna8103|Name=rna8103|organism=Nannochloropsis gaditana|type=mRNA|length=983bp|location=Sequence derived from alignment at KK037247.1:565941..566923- (Nannochloropsis gaditana)
ATGGAGGTAAGAAATGTGCTTGACGACAGTCATGAGGCTTTTGACTGCTA
CTCATTCATTTGTATTCGCATATGCGTATTCCATGAAGCTGTGGCATCTA
ATTTCACCGGCGCCGGTATGTCGGTCACGAACTCCGTCAAGGTGGGCACT
GGCTTCGAGCTCCAATCAGGTAACTCATCCCTTTATCGGCCGATTACATT
ATGCTTTGATTCGCATAATGCGTCTTCTAAACGGAAGTTGGTTACTACCT
AACTCTAAACAGGTCCTTTCATGGCGACAACCGATAATTTTGATGTCCAG
AGTGACGACATTACCATGTCGTACAGCAACAGTTTTCAGCTAAGTGTGAC
GAGTGGAACCGCTATGAGAGCTGGTGACATATCATTAAGTGAAGCTGCAG
CACAGATATACACAGAACCCGGAGTGCTCAGGCTTTCCACTGGTGCTGCA
ACATTTGCCATGGCCGCACGAGGACCTTTGTCAGTTTTACAAACTAAGGC
AGATGTCTACGAACAGGTGGCGGACGAATGGTCGCTAAACTCCGGGGGTG
ATATTGATGTCACCTCCAATGGGACACTGTCGATGCAATCCGTGAGCGGT
GATCTGACATTTGACGAGCTACAGGTAGAAACCGATACCTTTGCAATCGA
GTCTGTTGACATTCTCGTCGATAGCAGCGAGACCCTGGAGATGGTGGTGG
GCAACGCCACGACACTGACGTCTCCCTTCGTATCGCATTTCTCGGACGTG
ACGTTGGTGGAGAGCAGTGAGAGCATCACGTGGCGAACGGGGAATGCCAG
CCTCTCTGCCGATGCGGTTACGATTGACAGCAGCGAGACCCTGGAGATGG
TGGTGGGCAATGCCACGACACTGACGTCTCCCTTCGTATCGCATTTCTCG
GACGTGACGTTGGTGGAGAGCAGTGAGAGCATCACGTGGCGAACGGGGAA
TGCCAGCCTCTCTGCCGATGCGGTTGCGATTGA

Coding sequence (CDS) from alignment at KK037247.1:565941..566923-

>rna8103 ID=rna8103|Name=rna8103|organism=Nannochloropsis gaditana|type=CDS|length=2538bp|location=Sequence derived from alignment at KK037247.1:565941..566923- (Nannochloropsis gaditana)
CCTCTCTGCCGATGCGGTTGCGATTGAGTCCTTTCATGGCGACAACCGAT
AATTTTGATGTCCAGAGTGACGACATTACCATGTCGTACAGCAACAGTTT
TCAGCTAAGTGTGACGAGTGGAACCGCTATGAGAGCTGGTGACATATCAT
TAAGTGAAGCTGCAGCACAGATATACACAGAACCCGGAGTGCTCAGGCTT
TCCACTGGTGCTGCAACATTTGCCATGGCCGCACGAGGACCTTTGTCAGT
TTTACAAACTAAGGCAGATGTCTACGAACAGGTGGCGGACGAATGGTCGC
TAAACTCCGGGGGTGATATTGATGTCACCTCCAATGGGACACTGTCGATG
CAATCCGTGAGCGGTGATCTGACATTTGACGAGCTACAGGTAGAAACCGA
TACCTTTGCAATCGAGTCTGTTGACATTCTCGTCGATAGCAGCGAGACCC
TGGAGATGGTGGTGGGCAACGCCACGACACTGACGTCTCCCTTCGTATCG
CATTTCTCGGACGTGACGTTGGTGGAGAGCAGTGAGAGCATCACGTGGCG
AACGGGGAATGCCAGCCTCTCTGCCGATGCGGTTACGATTGACAGCAGCG
AGACCCTGGAGATGGTGGTGGGCAATGCCACGACACTGACGTCTCCCTTC
GTATCGCATTTCTCGGACGTGACGTTGATGGAGGTAAGAAATGTGCTTGA
CGACAGTCATGAGGCTTTTGACTGCTACTCATTCATTTGTATTCGCATAT
GCGTATTCCATGAAGCTGTGGCATCTAATTTCACCGGCGCCGGTATGTCG
GTCACGAACTCCGTCAAGGTGGGCACTGGCTTCGAGCTCCAATCAGCCTC
TCTGCCGATGCGGTTGCGATTGAGTCCTTTCATGGCGACAACCGATAATT
TTGATGTCCAGAGTGACGACATTACCATGTCGTACAGCAACAGTTTTCAG
CTAAGTGTGACGAGTGGAACCGCTATGAGAGCTGGTGACATATCATTAAG
TGAAGCTGCAGCACAGATATACACAGAACCCGGAGTGCTCAGGCTTTCCA
CTGGTGCTGCAACATTTGCCATGGCCGCACGAGGACCTTTGTCAGTTTTA
CAAACTAAGGCAGATGTCTACGAACAGGTGGCGGACGAATGGTCGCTAAA
CTCCGGGGGTGATATTGATGTCACCTCCAATGGGACACTGTCGATGCAAT
CCGTGAGCGGTGATCTGACATTTGACGAGCTACAGGTAGAAACCGATACC
TTTGCAATCGAGTCTGTTGACATTCTCGTCGATAGCAGCGAGACCCTGGA
GATGGTGGTGGGCAACGCCACGACACTGACGTCTCCCTTCGTATCGCATT
TCTCGGACGTGACGTTGGTGGAGAGCAGTGAGAGCATCACGTGGCGAACG
GGGAATGCCAGCCTCTCTGCCGATGCGGTTACGATTGACAGCAGCGAGAC
CCTGGAGATGGTGGTGGGCAATGCCACGACACTGACGTCTCCCTTCGTAT
CGCATTTCTCGGACGTGACGTTGATGGAGGTAAGAAATGTGCTTGACGAC
AGTCATGAGGCTTTTGACTGCTACTCATTCATTTGTATTCGCATATGCGT
ATTCCATGAAGCTGTGGCATCTAATTTCACCGGCGCCGGTATGTCGGTCA
CGAACTCCGTCAAGGTGGGCACTGGCTTCGAGCTCCAATCAGCCTCTCTG
CCGATGCGGTTGCGATTGAGTCCTTTCATGGCGACAACCGATAATTTTGA
TGTCCAGAGTGACGACATTACCATGTCGTACAGCAACAGTTTTCAGCTAA
GTGTGACGAGTGGAACCGCTATGAGAGCTGGTGACATATCATTAAGTGAA
GCTGCAGCACAGATATACACAGAACCCGGAGTGCTCAGGCTTTCCACTGG
TGCTGCAACATTTGCCATGGCCGCACGAGGACCTTTGTCAGTTTTACAAA
CTAAGGCAGATGTCTACGAACAGGTGGCGGACGAATGGTCGCTAAACTCC
GGGGGTGATATTGATGTCACCTCCAATGGGACACTGTCGATGCAATCCGT
GAGCGGTGATCTGACATTTGACGAGCTACAGGTAGAAACCGATACCTTTG
CAATCGAGTCTGTTGACATTCTCGTCGATAGCAGCGAGACCCTGGAGATG
GTGGTGGGCAACGCCACGACACTGACGTCTCCCTTCGTATCGCATTTCTC
GGACGTGACGTTGGTGGAGAGCAGTGAGAGCATCACGTGGCGAACGGGGA
ATGCCAGCCTCTCTGCCGATGCGGTTACGATTGACAGCAGCGAGACCCTG
GAGATGGTGGTGGGCAATGCCACGACACTGACGTCTCCCTTCGTATCGCA
TTTCTCGGACGTGACGTTGATGGAGGTAAGAAATGTGCTTGACGACAGTC
ATGAGGCTTTTGACTGCTACTCATTCATTTGTATTCGCATATGCGTATTC
CATGAAGCTGTGGCATCTAATTTCACCGGCGCCGGTATGTCGGTCACGAA
CTCCGTCAAGGTGGGCACTGGCTTCGAGCTCCAATCAG

Synonyms

Publications