rna8098, rna8098 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8098
Unique Name	rna8098
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1782
Alignment location	KK037247.1:554380..557466 +

Link to JBrowse

Properties


Property Name	Value
Product	gtp-binding protein 1
Orig transcript id	gnl\|cribi\|Naga_100126g5.3032.mrna
Orig protein id	gnl\|cribi\|Naga_100126g5.3032
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:554380..557466 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100126g5	gene7842	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8098	rna8098-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22606.1	cds8076	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:554380..557466+
coding sequence from alignment at KK037247.1:554380..557466+

mRNA sequence

>rna8098 ID=rna8098|Name=rna8098|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp
ATCTTTGAACAGTTTGAAGAATGTCTCGGCAATTTCGGGCAGCGCTATTC
GTCCTCTTGTTGGTGTCTAGCCTTCTGACGTTCGTGTCAGCAACACCATC
CTCATCACGCAGCGCCGGCAACGGCAACTCCCCCCGGCTCCAAAAAGATA
GCTACATAATTAAAAAGTCTCGTGATGGCGCTTCCAGCACATTGCCTCGC
CGCAAGTCCCGTGCATTGTTCGCAGGAATCCGAGGCGGGGGTGTTGGCGG
CTCCCAGCCTCCTGCTCCTGTCGCACCTCCCCCCGGCACCAGCTCTTCAG
TCGCCTCAATGGTCAACCTTGCCAAAAACATCATCGGTGGCGGCATGCTT
GCTCTACCTGCAGGATTGGCCGCAGGGGCTGGGACAGGATACATCCCTGC
CTATTTATTGCTCGCCTTCTCAGCCGTCAGCTCGGCGTATACCTTTGTGT
TGGTGGGGCGGTCGGTCGAAGCCACGCGTTCCCGTTCTTTCAAAGAGGCC
TGGTCACGCACGGTGGGGCCCGCACACGCTTGGGTGGTGGACTATGCTAT
TACGGCCTTGGCGTTTGCGGTCTGCATTGTGTACGCTTGCTTTGTGGGCG
ACACTTTCACGTCTCTTTTGAAAGGTGCCGGGCTGCCGGCATGGCTGTCT
TCCCGGGAAGCCAGCATTCTCGCAGTCACCATCACGGTGCTGTTCCCGCT
CACGTTGCTTAAGGACTTGAGTGCCTTGCAGTATTCCTCCTATGTCGGGA
TCGCCGCGGTCATCTACACGGTCCTTTTCATGGCCTGGCGCTTTTGGGAC
GGGAGCTACGCCAAGGGCGGTGCTTTCTTTGCCGCTATCGCGCCGGAACT
CCGTCCCCGTCCCGCCCATTTTGGTCCCTGGAAGATGTCCGTGGGTACGG
CGATCCTCTTTAGCATGTTTTCCACCTCCTACATGGCGCACACGAACGCG
GTCAAGTTCTATAACGAGCTCGAGGGCCGCAGCGTCCGTCGTTTTTGGCA
GGTGGTGGCGGGGGCGATGGGGTCCGCCACCGTCATCTACCTGGCCGCGA
TGACGCTCGGCTTTGAAACCTTTGGCTTGGCTTCGCAGGGTCTGGTCCTG
AACAACTACCACGTCTCCCAAGACGTGTTGGCCACCATGGGCCGGATCGC
GACTGCCGTCTCGATCATCGGGGCACATCCCCTGCTCTTTAGCGGCTTGC
GCGACTCTTTTTTGAGCATCTTGCCCCCCAATGTGGTCTCTCGGCCCTCG
ACCTGGTTGTTGTCCACGATTGTCCTCTTAGGCGGGGCTACATGCATCTC
GTTGCTCTGCAAGGACGTGGGTCTCCTCGTCAGCTTGGTGGGGTCCTCCT
TGGGCGCGGCCATCGTCTACGTCTTCCCGCCTTTCATGTACCTTCACCTT
CTAAGGCGGCGCAAGGACATTCATACCTCAAGAGGGGAAATCCTTCTGCT
GCACGCCACAATCCTCTTCGGTGTAGTGAGCGGTTGCTTCGGGACATGGG
TGGCTCTTACAGGCGGTGGGGGAGGGAAGTAAACGGAACAAGTTTGTGGG
AGCTGGTTTTTAGGTGAGGGAAGGGACACGACCACATGAAAGTGAGCGAT
GGAGCCTATGAAAATTAGAAGCCAGGTCAGAGATCAAGAAAAAGATATTT
CGAAAATAGCACGCACCAAAAACTGCGGCTTAAAATACACCACATTCAAG
GTGATAAAATCTAAAATCACGTAGTATCGCTCAGCAAATTGACAGCAAGT
CTTTGCAGCACTGTTTAAAAGGATACATAGTT

protein sequence of rna8098

>rna8098-protein ID=rna8098-protein|Name=rna8098|organism=Nannochloropsis gaditana|type=polypeptide|length=1028bp
MAESRIISPVDLASLPPKTSEVKIIGARIPIMAASVTAVHRAPTPYEANN
HARRCRSRSEGSPITRSGVAPRSDHQPRADNGSTSSSMMSSLFAPPASLE
TAPHFEREVEEGNIEHKLHLCRPSEERLLHLTTQLNWRLNESPQGDAFYL
IGVRDDGFPEGLPDVELRASIETLRVMAGGVRARLVQIRAFRGVTGGRIA
HVRLQRTEIPSWGLTRAHERVRVAVLGGEEGGKSTLVGVLTTGKLDNGQG
LARMQVFRHNHEVENGRTSSVSQHILGFRKDGSVANYKDCMPPPESSLQA
TTRVGGARGHRSRSLSSEDDSDFPAPPSFGTSLPSSLSAPSGAPSVLSPE
EIQRESSHVLSFIDLAGHAKYLKTTFSGITGLSPDHAMVTLPASAAWAGE
GGQGGEEVGWEDGDGKGGGSAHAPASQEGPDGSREQERTREEERMPKEAC
RRDGHSRQAPSGVVHGDAMDLGPMMDREDPESQCRQSWSAGNEIKVERGN
AASNSSRRSRAPDGMQDEGGACLAGREDDPARCRGLSRDEGSSEKDRDAL
AYLELALSLRTPLFVVLTKADLASEAQVRHTMGMLQAAFRAHRGRRKGRE
GVVNSPTASPASSPPLSTKAGPETPGWTGRGVGGGGAPRGAGEGLQEKGD
DSLSDGEGGSSWDKEGESCWLVRGEADLERAIRTYVSGYSSPPPGAAASR
VARHSGARATEPEPGEAEGVKKDSDHTGARRAGEGGRARLAPCLPVFLVS
SVTGQGLDLLRRFLRALPRSPTWAEAREDRIAEVHIDASLDVEGVGCVLA
GAIDRGRVSVGDRMLLGPLRESGAFEMVVVRSLHLHKVPVRSVGAGQCVT
LTFAPEAEEAICLEGLLCPESPNEGPPCSPLQGGQGVQICENAKINHGRD
VAEGSVDERLFMSGVPRALTTKTYKGIVLVSPAACPVAAFEFEAEIVVLS
DTHGPLSCNLEPSLHIHKTRQTAKLLSIDQGRHSSAGKGETVHCRFRFLF
HAEYVRVGMMIVVRIGRTVAVGWVVQRC

mRNA from alignment at KK037247.1:554380..557466+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8098 ID=rna8098|Name=rna8098|organism=Nannochloropsis gaditana|type=mRNA|length=3087bp|location=Sequence derived from alignment at KK037247.1:554380..557466+ (Nannochloropsis gaditana)
ATGGCAGAGAGTAGGATCATCAGCCCGGTGGACCTTGCCAGCCTTCCCCC
TAAAACAAGCGAAGTCAAAATCATTGGCGCGAGGATCCCCATAATGGCAG
CATCCGTGACAGCAGTCCATCGCGCCCCTACACCATACGAAGCCAATAAT
CACGCGCGCAGATGCCGTTCTCGAAGCGAGGGTTCCCCCATCACGCGCTC
TGGGGTTGCTCCCCGCAGCGATCACCAACCCAGAGCCGATAACGGTTCCA
CTAGCAGCAGTATGATGTCTAGCCTGTTTgcccctccggcctccctcGAA
ACGGCTCCGCATTTCGAGCGGGAGGTAGAAGAGGGCAACATCGAGCACAA
GCTTCACCTCTGTCGGCCCTCGGAAGAGCGGCTCTTGCACTTGACCACAC
AATTGAACTGGCGACTCAACGAAAGTCCTCAAGGCGATGCCTTCTATTTG
ATTGGTGTTAGGGACGACGGGTTCCCCGAAGGCCTCCCTGACGTGGAGCT
GCGCGCCTCCATTGAGACCCTGCGGGTCATGGCCGGAGGGGTGCGAGCCC
GTCTGGTGCAGATCCGAGCTTTTCGCGGGGTGACGGGTGGAAGGATCGCC
CACGTTCGGCTTCAGCGAACAGAAATTCCTTCCTGGGGCCTGACGAGGGC
GCATGAGCGGGTCCGGGTGGCGGTtctcggcggggaggaggggggaaaga
gcaccTTGGTGGGGGTGCTGACGACGGGCAAGCTGGACAACGGGCAGGGC
TTGGCGCGCATGCAGGTCTTCCGCCACAACCACGAGGTAGAGAACGGGAG
GACCTCGAGCGTGTCGCAGCACATCCTCGGCTTCCGGAAGGACGGCTCTG
TTGCCAATTACAAGGACTGCATGCCCCCTCCTGAGTCGTCCCTCCAGGCC
ACGACGCGTGTCGGCGGCGCCCGCGGCCATCGGTCTCGGAGCCTCAGCTC
GGAGGACGACAGCGATTTccctgcgcctccctccttcgggacctccctcc
cttcctccctttcggCCCCTTCCGGGGCCCCCAGCGTCCTAAGCCCGGAG
GAAATCCAGCGGGAGAGCAGccacgtcctctccttcatcgATCTGGCCGG
CCACGCCAAGTACCTCAAGACCACGTTCTCCGGCATCACAGGCCTATCCC
CCGATCATGCCATGGTCACGCTCCCTGCCTCGGCGGCGTgggctggggaa
gggggccagggaggggaggaggttggctgggaggacggagacgggaaagg
gggggggtcggccCATGCCCCAGCCTCCCAGGAGGGCCCCGACGGGAGCA
GAGAGCAagagaggacaagggaagaggaaaggatgccgAAGGAGGCCTGT
CGGCGGGACGGGCACTCGCGCCAGGCTCCATCCGGGGTCGTCCACGGGGA
CGCGATGGACCTTGGCCCCATgatggacagggaggacCCTGAGTCTCAAT
GTCGCCAAAGCTGGAGCGCAGGAAACGAGATCAaggtggaaaggggaaaT
GCTGCGTCGAATTCGTCGAGAAGGAGCCGAGCTCCGGACGGCATGcagga
tgaagggggggcgtgcctggcagggagggaggacgatcCTGCCCGATGCC
GCGGCCTGTCTCGAGACGAGGGGAGCTCCGAGAAGGACAGAGACGCCTTG
GCCTACTTGGAGCTCGCGCTCTCGCTCCGGACACCGCTCTTTGTCGTCTT
GACTAAAGCCGATCTGGCCTCCGAGGCCCAGGTTAGACACACCATGGGCA
TGCTGCAAGCCGCTTTTCGCGCGCACCGAGGGCGTCGAAAGGGTCGAGAG
GGAGTCGTCAACTCACCCACAGCATCACccgcgtcctcgcctcctctttc
gacGAAGGCGGGCCCGGAAACGCCCGGCTGGACAGGCCGGGgcgtcgggg
gcgggggcgctccaaggggggcaggggagggtctgcaagaaaaaggagac
gaTTCTTTGtcggatggggagggagggagctcctgggacaaggagggaga
gtcaTGCTGGCTAGTACGGGGGGAGGCCGACTTAGAACGAGCCATCCGAA
CCTACGTGTCGGGgtactcctcccctccccccggagCGGCCGCCTCGAGG
GTCGCGAGACATTCGGGGGCCCGGGCAACCGAGCCAGAGCccggggaggc
agaaggTGTTAAAAAGGACAGTGACCATACAGGAGCgcggagagcggggg
agggaggccgggccAGGCTCGCGCCCTgtctccccgtcttccttgtCTCG
AGCGTCACGGGTCAGGGgctcgacctcctccgccgcttcctccgcgcgcT
GCCCCGGTCCCCCACCTGGGCGGAGGCGCGAGAGGATCGGATCGCGGAGG
TGCACATTGACGCCTCCCtggatgtggagggcgtgggctgCGTGCTAGCG
GGGGCTATCGACCGAGGAAGGGTCTCAGTGGGAGACCGCATGCTCCTGGG
CCCTCTCCGGGAATCCGGTGCCTTCGAGATGGTGGTCGTCAGGAGTCTGC
ATCTCCATAAGGTGCCAGTGCGGTCGGTGGGGGCGGGTCAATGCGTCACT
TTGACGTTCGCGcctgaggcggaggaagcgatctGCCTCGAGGGGCTACT
GTGCCCAGAAAGCCCAAATGAAGgccccccttgctctcccttGCAAGGTG
GGCAAGGAGTGCAAATTTGCGAGAATGCGAAGATTAATCATGGAAGAGAT
GTGGCAGAGGGGAGCGTCGACGAGAGGCTGTTTATGTCAGGTGTACCGCG
GGCGCTTACGACCAAAACCTACAAAGGCATCGTGCTTGTCTCCCCTGCCG
CCTGCCCCGTAGCCGCCTTCGAGTTCGAGGCAGAGATTGTAGTGCTAAGC
GACACCCATGGGCCGCTATCCTGTAATCTTGAACCCTCCCTTCACATCCA
TAAGACACGCCAAACAGCCAAGCTTCTGAGCATTGACCAAGGGCGACATT
CCTCGGCGGGTAAAGGAGAGACAGTGCACTGTCGTTTTCGGTTCTTGTTC
CATGCTGAGTATGTTCGTGTGGGGATGATGATAGTGGTGAGGATTGGACG
CACAGTAGCGGTAGGCTGGGTGGTGCAGCGTTGCTAA

Coding sequence (CDS) from alignment at KK037247.1:554380..557466+

>rna8098 ID=rna8098|Name=rna8098|organism=Nannochloropsis gaditana|type=CDS|length=3087bp|location=Sequence derived from alignment at KK037247.1:554380..557466+ (Nannochloropsis gaditana)
ATGGCAGAGAGTAGGATCATCAGCCCGGTGGACCTTGCCAGCCTTCCCCC
TAAAACAAGCGAAGTCAAAATCATTGGCGCGAGGATCCCCATAATGGCAG
CATCCGTGACAGCAGTCCATCGCGCCCCTACACCATACGAAGCCAATAAT
CACGCGCGCAGATGCCGTTCTCGAAGCGAGGGTTCCCCCATCACGCGCTC
TGGGGTTGCTCCCCGCAGCGATCACCAACCCAGAGCCGATAACGGTTCCA
CTAGCAGCAGTATGATGTCTAGCCTGTTTgcccctccggcctccctcGAA
ACGGCTCCGCATTTCGAGCGGGAGGTAGAAGAGGGCAACATCGAGCACAA
GCTTCACCTCTGTCGGCCCTCGGAAGAGCGGCTCTTGCACTTGACCACAC
AATTGAACTGGCGACTCAACGAAAGTCCTCAAGGCGATGCCTTCTATTTG
ATTGGTGTTAGGGACGACGGGTTCCCCGAAGGCCTCCCTGACGTGGAGCT
GCGCGCCTCCATTGAGACCCTGCGGGTCATGGCCGGAGGGGTGCGAGCCC
GTCTGGTGCAGATCCGAGCTTTTCGCGGGGTGACGGGTGGAAGGATCGCC
CACGTTCGGCTTCAGCGAACAGAAATTCCTTCCTGGGGCCTGACGAGGGC
GCATGAGCGGGTCCGGGTGGCGGTtctcggcggggaggaggggggaaaga
gcaccTTGGTGGGGGTGCTGACGACGGGCAAGCTGGACAACGGGCAGGGC
TTGGCGCGCATGCAGGTCTTCCGCCACAACCACGAGGTAGAGAACGGGAG
GACCTCGAGCGTGTCGCAGCACATCCTCGGCTTCCGGAAGGACGGCTCTG
TTGCCAATTACAAGGACTGCATGCCCCCTCCTGAGTCGTCCCTCCAGGCC
ACGACGCGTGTCGGCGGCGCCCGCGGCCATCGGTCTCGGAGCCTCAGCTC
GGAGGACGACAGCGATTTccctgcgcctccctccttcgggacctccctcc
cttcctccctttcggCCCCTTCCGGGGCCCCCAGCGTCCTAAGCCCGGAG
GAAATCCAGCGGGAGAGCAGccacgtcctctccttcatcgATCTGGCCGG
CCACGCCAAGTACCTCAAGACCACGTTCTCCGGCATCACAGGCCTATCCC
CCGATCATGCCATGGTCACGCTCCCTGCCTCGGCGGCGTgggctggggaa
gggggccagggaggggaggaggttggctgggaggacggagacgggaaagg
gggggggtcggccCATGCCCCAGCCTCCCAGGAGGGCCCCGACGGGAGCA
GAGAGCAagagaggacaagggaagaggaaaggatgccgAAGGAGGCCTGT
CGGCGGGACGGGCACTCGCGCCAGGCTCCATCCGGGGTCGTCCACGGGGA
CGCGATGGACCTTGGCCCCATgatggacagggaggacCCTGAGTCTCAAT
GTCGCCAAAGCTGGAGCGCAGGAAACGAGATCAaggtggaaaggggaaaT
GCTGCGTCGAATTCGTCGAGAAGGAGCCGAGCTCCGGACGGCATGcagga
tgaagggggggcgtgcctggcagggagggaggacgatcCTGCCCGATGCC
GCGGCCTGTCTCGAGACGAGGGGAGCTCCGAGAAGGACAGAGACGCCTTG
GCCTACTTGGAGCTCGCGCTCTCGCTCCGGACACCGCTCTTTGTCGTCTT
GACTAAAGCCGATCTGGCCTCCGAGGCCCAGGTTAGACACACCATGGGCA
TGCTGCAAGCCGCTTTTCGCGCGCACCGAGGGCGTCGAAAGGGTCGAGAG
GGAGTCGTCAACTCACCCACAGCATCACccgcgtcctcgcctcctctttc
gacGAAGGCGGGCCCGGAAACGCCCGGCTGGACAGGCCGGGgcgtcgggg
gcgggggcgctccaaggggggcaggggagggtctgcaagaaaaaggagac
gaTTCTTTGtcggatggggagggagggagctcctgggacaaggagggaga
gtcaTGCTGGCTAGTACGGGGGGAGGCCGACTTAGAACGAGCCATCCGAA
CCTACGTGTCGGGgtactcctcccctccccccggagCGGCCGCCTCGAGG
GTCGCGAGACATTCGGGGGCCCGGGCAACCGAGCCAGAGCccggggaggc
agaaggTGTTAAAAAGGACAGTGACCATACAGGAGCgcggagagcggggg
agggaggccgggccAGGCTCGCGCCCTgtctccccgtcttccttgtCTCG
AGCGTCACGGGTCAGGGgctcgacctcctccgccgcttcctccgcgcgcT
GCCCCGGTCCCCCACCTGGGCGGAGGCGCGAGAGGATCGGATCGCGGAGG
TGCACATTGACGCCTCCCtggatgtggagggcgtgggctgCGTGCTAGCG
GGGGCTATCGACCGAGGAAGGGTCTCAGTGGGAGACCGCATGCTCCTGGG
CCCTCTCCGGGAATCCGGTGCCTTCGAGATGGTGGTCGTCAGGAGTCTGC
ATCTCCATAAGGTGCCAGTGCGGTCGGTGGGGGCGGGTCAATGCGTCACT
TTGACGTTCGCGcctgaggcggaggaagcgatctGCCTCGAGGGGCTACT
GTGCCCAGAAAGCCCAAATGAAGgccccccttgctctcccttGCAAGGTG
GGCAAGGAGTGCAAATTTGCGAGAATGCGAAGATTAATCATGGAAGAGAT
GTGGCAGAGGGGAGCGTCGACGAGAGGCTGTTTATGTCAGGTGTACCGCG
GGCGCTTACGACCAAAACCTACAAAGGCATCGTGCTTGTCTCCCCTGCCG
CCTGCCCCGTAGCCGCCTTCGAGTTCGAGGCAGAGATTGTAGTGCTAAGC
GACACCCATGGGCCGCTATCCTGTAATCTTGAACCCTCCCTTCACATCCA
TAAGACACGCCAAACAGCCAAGCTTCTGAGCATTGACCAAGGGCGACATT
CCTCGGCGGGTAAAGGAGAGACAGTGCACTGTCGTTTTCGGTTCTTGTTC
CATGCTGAGTATGTTCGTGTGGGGATGATGATAGTGGTGAGGATTGGACG
CACAGTAGCGGTAGGCTGGGTGGTGCAGCGTTGCTAA

Synonyms

Publications