rna8096, rna8096 (mRNA) Nannochloropsis gaditana

Overview
Namerna8096
Unique Namerna8096
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1376
Alignment locationKK037247.1:550356..551631 -

Link to JBrowse

Properties
Property NameValue
ProductGNAT domain protein
Orig transcript idgnl|cribi|Naga_100126g8.3021.mrna
Orig protein idgnl|cribi|Naga_100126g8.3021
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:550356..551631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100126g8gene7840Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22595.1cds8074Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8096rna8096-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8096 ID=rna8096|Name=rna8096|organism=Nannochloropsis gaditana|type=mRNA|length=1376bp
TCATTACAAGACGTTTTCAATACGCAACATAGACCAGAGTCTTATATTTT
TTCCTTACAACCGTTATATCCGTACGTGTTCGTGCTGCTAGGCCCCCTCG
CCAGATTTTTTGGGGCGACAAGCGGGCATTTGACGCCTTCGTCTTCCTAG
TGCATCAACTTCCCCTAAGGGCCACACTTCAAAATCTTGCTGAGGCTATT
CCGAGCATCGCATTTCGCACACGCAGGCGTCGAACGCATGGCTACACCGA
GGCAACTAGGATTTTCCACACCACAAAGAGCAGCAACGTCAGACGCGGAT
GTCTCCCATGATAAAAAAACTGATGTCGCGTTCGTGCTGCGAACTGAAGC
CCCAGCAGCAGGAACGGCAGATAGATCTGTCTCCCCTACGCCCGACGCCC
TACTTCCTCCCATGACTTCTATGCCTTCACGTATCAGCACTGCCCTTTTA
AGCACCCCTGTGAAATTACCGCACACCCAGAGTTGCGGCACCGGGGAGGA
AGGAGGTGGGTTCAGCACCCCCGACGCTCCTACAGCGGGCGTACGTCACA
GTACCGGCTCCTCCCTCCTCCTGCACCACCACCGGCGTCGCAACCTCACC
CCACAGGACGGCACTGATCACGACGATAGCCTAGAGAGCCATGCTCAGCA
CCAAACAGAAGGGCATGATCCCGATTTCGACTGTCCCATCTGCATGTCCC
CTTTGGCCCTGCGCTCCGTGTACAAGACGCGCTGCTCCCACCACTTCCAC
AAATCCTGCCTGGTCGAAAGTCGGGCCGCGCACAACATTGGATGTCCTTA
TTGTCGGGGACACATCACGCCTGGGTTGACCCCTTTTGACGCCTGCGCGG
GCCGCGTGGGCAATGACAGGGACCAGATTGTCAATCGGGCCAGGGCAGCG
CGACAGGCAGTACTGGCGCGGATTCAGCAACGCCAAGGCGAAAGGCGGGG
CAGGGGAGGAGTGAGTGATAGGCGATGGACCTTGTCAGTGCTGAGAGAGG
GAGACGGGTCGGACGTGGGGGCCCTTGGAGGCTTGAACGAGGCGTTTGAG
CGGGTGGCGGCTATTTCGGGGGAGAGGGAACCACGCCGCGTTGTCATGGC
CGGCTCGACGGAGGATCTGGGCCACCGCATCGATCACGATGATGATTTGC
CATGATGGATGACGGGTCACAAGAAGATGAGGGACGGAAACGTTCAAAAA
GGAAACAAAAGGAAGCGCGACGAAGGCCAAAGAAAGACATGCGTTTGCGG
TGCGACACCGTCACAAGAAAGGAATGCCTCAGTTAAGGCTGCCCCATCAA
AAAGCTTATATGATTGTTTTTCTCTGCATTTACCTTTTCAGTCGTCTCTG
AATTTCAAAAAATATGGTCGACATCC
back to top

protein sequence of rna8096

>rna8096-protein ID=rna8096-protein|Name=rna8096|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MHITFTSINAANLTELRLLNDTTFPVRYNDKFYAEVLTTLPDFTKYACIQ
NEVVGAICCRLEEGIESVEGQCDHRTRSLVSSLQKDRPQDVQEHSKESDT
KDNSLSTENILAADDIHGRQVVDIPSTPSDKQFKLYIMTLGVQAAHRGRG
IGSQLLTSVLQATRRPPHANRIREIYLHVQTSNADAIHFYSKFGFETQSR
IQNYYKRIEPPDCFVLSLLMDGGKQKHTRENGGASSEEGGRGHPTSSSSP
LATLADLASTASSAEVHARERSKGLD
back to top

mRNA from alignment at KK037247.1:550356..551631-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8096 ID=rna8096|Name=rna8096|organism=Nannochloropsis gaditana|type=mRNA|length=1276bp|location=Sequence derived from alignment at KK037247.1:550356..551631- (Nannochloropsis gaditana)
TGTCATTTCTACTGAGAACATAAGGGTTGTCAGCTCGAGCGTACAACTTT
GGTAGGATATAGAACCTTTGACGCCACGGATGGCGTACTTGTTTTAATTT
GTGCATGGCAAATTCTACAGCCCCCTTACCTTTACCTCCCCACCCCATAC
AATTTGCAGGCACGATCAGAAGAAGACTTCTTAAATGCTGCTTTCACCTA
TCATCATTCTAGTTGGTCGCCAGCCTTCTTGCTAGTTGAAGTCGTTTGAT
AGGGCAGCAAAGCAATGCACATTACATTCACCAGTATTAACGCTGCCAAT
TTAACGGAACTAAGGCTCTTAAACGACACGACCTTTCCCGTGCGTTACAA
CGATAAATTTTACGCTGAGGTTTTGACGACCCTCCCAGATTTTACAAAGT
ATGCATGCATTCAAAATGAGGTGGTGGGAGCAATCTGTTGTCGCCTAGAG
GAGGGCATCGAAAGTGTCGAGGGCCAGTGCGACCATCGCACCAGGAGTCT
GGTGTCGTCATTACAAAAGGATCGGCCGCAGGATGTGCAAGAACATTCGA
AAGAAAGTGACACCAAGGATAATTCCCTGAGCACCGAAAACATTTTGGCG
GCAGATGACATTCATGGCAGGCAAGTCGTCGACATCCCAAGCACACCGAG
TGACAAGCAGTTTAAACTGTACATTATGACTCTGGGCGTACAAGCTGCAC
ATCGCGGACGAGGGATCGGCTCTCAGCTGCTCACCTCTGTTTTGCAGGCT
ACTAGAAGGCCTCCTCACGCTAACAGAATCCGAGAGATCTATCTCCACGT
GCAAACCAGCAACGCGGACGCAATTCATTTCTACTCCAAGTTCGGATTTG
AGACACAGAGCAGAATCCAAAACTATTACAAGCGAATCGAGCCCCCAGAC
TGCTTTGTCCTCTCTCTTTTGATGGATGGCGGAAAGCAGAAGCACACAAG
GGAGAACGGAGGGGCTTCAAGCGAAGAGGGGGGGAGAGGGCATCCCACAT
CCTCGTCGTCGCCCTTGGCCACACTCGCAGACCTCGCTTCGACGGCCTCC
TCTGCAGAGGTCCACGCTAGAGAACGAAGTAAAGGTCTCGATTGAGTCAG
GACGCTTGAGTCCTTCAAGAGGATGGAAGATAATCGAAGAGAGGCCTGGA
GGGTAATGCGCACGTAACTTGGCCATACCGAGAGGCGGCTACGGGATGTC
GACCATATTTTTTGAAATTCAGAGACGACTGAAAAGGTAAATGCAGAGAA
AAACAATCATATAAGCTTTTTGATGG
back to top

Coding sequence (CDS) from alignment at KK037247.1:550356..551631-

>rna8096 ID=rna8096|Name=rna8096|organism=Nannochloropsis gaditana|type=CDS|length=831bp|location=Sequence derived from alignment at KK037247.1:550356..551631- (Nannochloropsis gaditana)
ATGCACATTACATTCACCAGTATTAACGCTGCCAATTTAACGGAACTAAG
GCTCTTAAACGACACGACCTTTCCCGTGCGTTACAACGATAAATTTTACG
CTGAGGTTTTGACGACCCTCCCAGATTTTACAAAGTATGCATGCATTCAA
AATGAGGTGGTGGGAGCAATCTGTTGTCGCCTAGAGGAGGGCATCGAAAG
TGTCGAGGGCCAGTGCGACCATCGCACCAGGAGTCTGGTGTCGTCATTAC
AAAAGGATCGGCCGCAGGATGTGCAAGAACATTCGAAAGAAAGTGACACC
AAGGATAATTCCCTGAGCACCGAAAACATTTTGGCGGCAGATGACATTCA
TGGCAGGCAAGTCGTCGACATCCCAAGCACACCGAGTGACAAGCAGTTTA
AACTGTACATTATGACTCTGGGCGTACAAGCTGCACATCGCGGACGAGGG
ATCGGCTCTCAGCTGCTCACCTCTGTTTTGCAGGCTACTAGAAGGCCTCC
TCACGCTAACAGAATCCGAGAGATCTATCTCCACGTGCAAACCAGCAACG
CGGACGCAATTCATTTCTACTCCAAGTTCGGATTTGAGACACAGAGCAGA
ATCCAAAACTATTACAAGCGAATCGAGCCCCCAGACTGCTTTGTCCTCTC
TCTTTTGATGGATGGCGGAAAGCAGAAGCACACAAGGGAGAACGGAGGGG
CTTCAAGCGAAGAGGGGGGGAGAGGGCATCCCACATCCTCGTCGTCGCCC
TTGGCCACACTCGCAGACCTCGCTTCGACGGCCTCCTCTGCAGAGGTCCA
CGCTAGAGAACGAAGTAAAGGTCTCGATTGA
back to top
Synonyms
Publications