rna8086, rna8086 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8086
Unique Name	rna8086
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3608
Alignment location	KK037247.1:532341..533555 -

Link to JBrowse

Properties


Property Name	Value
Product	solute carrier family member 27
Orig transcript id	gnl\|cribi\|Naga_100126g19.3031.mrna
Orig protein id	gnl\|cribi\|Naga_100126g19.3031
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:532341..533555 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100126g19	gene7830	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22605.1	cds8064	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8086	rna8086-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:532341..533555-
coding sequence from alignment at KK037247.1:532341..533555-

mRNA sequence

>rna8086 ID=rna8086|Name=rna8086|organism=Nannochloropsis gaditana|type=mRNA|length=3608bp
ACAGCAAAGGGCAACACGTAGCCACGCCTGCAACGTGACCACGCCCATGC
TTCGATCACGCACTGACCCAATTACACGCGCTTCATAAACACCGGACAGG
TTGACCAGGGGACAGGCAGCAACTGCCTGTAAAAGGGGTGCGCTTGGCTT
TACAAGTGCTTCTTCCCCCTCGGGTTCTGGGTGCCCCTGTTTGGGTGAAA
CGAGCGAGAGTCAACAAGTGCGAGCAATGATTTGGCTTGTCACCACTCCT
GTTTAAGTCAACTCGTCTGTTAGATATCTGCTGTATGTACCTACATATCT
GATCGCCACACAGCGGAAATCGAACGAGACAGTTGTCGCACGCGAGTTAC
GTTGGGGTGAGATCCTTGATACATTCTGTGGTACCTCATAGGGTGTGAAA
CCCGCGATTTGGACTACGTTTTTGAAACCTGCTGGCTTTACCGCCTCCTC
TTGTGTTTCGGATACCTGTAAACTGATATCCGGTAGCGCATTGGTCGGGA
CGACAAGAGTCGAGTTCTGTATCTCCTGCGCTCTTCGACAATCTGCTCCC
CCAAGCCCCTCTTCGCGTCTAGTCTTCTAGCCCAAGAACAAAAATATCAA
CAAAACCGGAAGAAATGGTCAGGTACTTAAGCGGGAACGGCGCAGTGTTC
CACCACGCGCAGCTTCGTCGCAGCGTGTCCGCCTCGGATTCCCCTTCTTG
CACCGCGGCCGACCAGAAGAAAGAGACTTGCCCGGGCGGGATCCTCCCTC
CGCCCTTTCCCGGCCGCAGTGCCACGATTGCCAGCAACACCTCCACCTCT
TCCTCTCCCTCGATCGCCACCACGGACACGGGCCTGAGCCACTTGAACCT
TTCCCTCCTGGGGGGCTCCGTGTCCTCCTCGCACCTGGTGGGAGGGCAGG
CCTCGCCCTACATGCGCCAGGCACGAAAGGATAGCTTGGGGAGCAGCATC
AGCAGCATGGGGGGCAGCGAGGGGGGCTCTCCTCGGGTGACTCGGGCGGA
GTGCGAAAACTGCGGCTACGTGTTTTTGTGCGCGTACTCCAAGGGCGGGA
GCACCTACTGCTCTCTGGACTGTCGCACCACCCACAATCTGTACGGCGTG
GAAGACGCCTTCAACCACATGGTCACTGGCACGTCCCTGGATGCGGCGGC
CCACTCCTTCTCTGTCACGCCCCAGAGGCAGGCTGTGTATGCGCACCGAC
CGCCCCCTCGACAGCCTCTCCCGGGACCTCAGGGTAGCAGCGAGGCTCCG
AGAGCCCGAATGGACGCAGCGCGCTCCGTGGTGCGGCAAAGCGAGAATAA
ACAGAATGCGGCAGCTCATGAAGACGTCAACATGGGCGCAGGCACTGGCG
TGTGCCCGTCTGGGGTGGGAGGGGGGGGAGGCCGGACGCAGACGGAAGCC
GTGCACGGACGGGCCAGGCGACCGGTCAGGTGGCCCCTGCGTCCAAAGAG
GCGGAAGCACCCCCCCCCTCTGGAGCCTCGAGCGGAGGGCAGAGAGGGTG
CCCACAGCGCGATGACGACGGCGGGTCTGCGTCGACCTCACGAAGGTCTG
CCTAGTGAGGAGGAGATGGCAACGCCGGCGCTCGCCTCGGACCTCAAATG
CTCGCGTGGTCAGGGCCTCACGGACCCCCCGGCCCCCGCCCCCATGCCGC
CCCACCCACGTCCGCCGCTTTCTCCTCCCTCGTCTCCCCTCTTCCTCCAC
CCCGTCGCGGTCCCGAGGCCCCGCCCGGCCGCCTGTGCGACTCCCTTGGA
GATGATCATGCCCTGCTTGAGCAGCTTTAGCACCAGCGGGGGGGAGGAAA
GTGCGGCGGCAGGCGATGGTCAGGGCCAGTCCAGTCACCCCTCGTACCCT
CAAGCCTTTCCTCGACCCCTGCCTCCCCCGACTGCCGCCATCCGGTCTCG
GGCCCCAGGCTCGAAGAGTGACGAGGGGAGCCCTCTCCCCTTTGACACGG
CGCACATCGCTTCTTTGGAGCGGCGTCGGCACGCGGCCTTGCACTCGCAC
CATCCAGAACATTCGGGGGAGGAGAGGGGCAGGCAGGGGCACGGGGGAAG
GAGGAAGCCGGGAAGGATCGCTTCCACTCGACCCGATGAAGGCTCGCTGA
AGAGAGAAACTCCTAGGGGCTCCCCATCTTTTACCTCTTCCTCGGCGTCT
TCCTCCTCCTCGCCCTCTCCCTCCTCCTCCTCCTCGCCGCAGCCCAGAAC
GCGACCTGTCCCCCTCCCCCGCTGTACCCGTCTCCCCAGTGAGCGGGAGC
TGGGGGAGGCATGCCGAGTGCAGCAGTGGCAGCAGCAGCAACAACAGGAG
CTCGATCAACGACCGACCGGGTTGCAGGGAAAGCAAAGCCTGGAGGCCTC
CGTCAAGGCAGACTCGGCCTTCGAACGGTCTGGCACCGCCATCCGCACTG
TGTGAGGCCCGACCTCGCGCTTAGAAGAGGAAGGGAAGATGGAAGGAGAA
GGGAGAGACACGGGGCTTGGAACAAAGCAATTGGCGCGTGGAAATGATAC
TGATTTATCCGAATTGGAGTAGATTCAATAAAATATGTATATGTACATAT
CTATAGATATATCAGCATATCAGTGGAGGTGAAGCTGTGATATTTTGGAA
GACATACGTGTTCGGGGACGATGGGGGCAGCATTCGCGCTCTCAAATCTT
TCAAATGTATCGATACCCTGAGTGTAACGCATTTGATATTTGCCCGGTTT
GTACACATGTCTGTAAACCACTTTTGATTTTAGGTAGTCCATTAAGGTGG
TGGGAGGCTCGTCGAAGGCTGGAAGGAACCCTGCCAAGCCTGGATGTGTG
TTTAATTTTTGAGCATTTTGAGACGTTCAGACAATATTTAATTTACGAGT
GAGGAGAAAAAACGGGGAAGAGTAGAGGTAGAGGCGTTGACGCGTGTGTA
GGTAAGATGGGTAGGTAATTTGGAGGGAGGAGTCTTGTTTTAATCTCGTA
ATGGCTGGCATGTCTTGATGGTTGACAGCACACGCTATATTCAAAAATGT
AATGCTGACACGATACTGTCGGATTAAAATAAACGCCACCTGCCGGGGTG
TATAGGTGAGGCATAAGTCGTCTTTTCGCAAGAGTACCTATTGTGTGCCA
GTGAAGGCGGTCGATGAGGCGCCGTCACGCTCGGTTACAGAATCGTCTTG
GGGTCTTGATTGAGAAAGACTCTCCGGGGATTGAAAATTGACAGAGGATA
TCTACTTAACTCGGATTTCTGCGGTGCGCTGAGCAGAATATGTGAGCGTG
GTGTCCGAGTGAGAATGCTATGAAGCTGACGCCAGGCAAAGAACACGCCT
GAGGGACGATACATGTAGTCGTATGAACTCCGGCAGGCAGCACCAACCTC
CTTGTCGCACCAGACAAGAGCATGGGCCGTTGAATGAATTGGCGTCAGGT
TTGAGAGGTGTAAAAGCTGACGGCAGGGGGGAAAAAGTTGATTGAAATGG
AAGTTTTTTATTTCTTGCAAAACATCGTATGATTAAAAGAAGCACTTTCT
ACTAAGCAAGACTTAATTGATTTGTCGTCCACGCATTTGGGACTAGGGTA
ATACTACAAGAAAAAGACATGAAACATTTGCCCACCAAGATGGGTGGGGT
TGCGGCAC

protein sequence of rna8086

>rna8086-protein ID=rna8086-protein|Name=rna8086|organism=Nannochloropsis gaditana|type=polypeptide|length=319bp
MGNPNTSGLSFGTIYGLSCLSACVAETVTFPLDLFKTLLQAERISRGERA
THQAYRSLVLSIFKEAVAKEQGGYMNLWRGLTPACLRHIVYSGSRLGLYE
FWREDVLGRDADGSFPLHKAVAAGMLSGAIGQFFSSPADVVKVRMQTEVG
RRRAGLPPLYRSTREAFVAIFREGGLRGLWRGWVPNCQRAALVQLGDLTT
YDCTKQYLLRDQKEGGWALEDNARTHACASLAAGLVAAFLGTPADVVKTR
CMNQPCDAVTGKGLLYRSSFDCLRSVVRDEGYQALWRGCFLNWLRMAPWS
LAFYLSFEHLRRMSGLRSF

mRNA from alignment at KK037247.1:532341..533555-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8086 ID=rna8086|Name=rna8086|organism=Nannochloropsis gaditana|type=mRNA|length=1215bp|location=Sequence derived from alignment at KK037247.1:532341..533555- (Nannochloropsis gaditana)
TGAAGCAGCTTATGTTATAGGAAAGGGACGGTCCAGCTCTCCTCCGCCCC
TCCATCACCAGCTTTCCTTTTTCTTTTTGCTTTTTGCGCCTTTTCGCTTT
CTACCAACTGCCGACAACAAGCGTTTTTTCTGGATGAGTGGTATTCTGCG
TCTTGGTTTCCGTTGCGGATATTGCCTCTCGTACTTTCAAGGCCCTGCCC
TTGACACGGTAGTATAAGAAAATTTATGTTTCAAAGATCTCAACGTTAAA
GTCAAATGGGCAATCCAAATACATCGGGTCTCAGTTTTGGTACCATTTAT
GGCTTGTCTTGCCTGTCGGCGTGCGTGGCTGAAACCGTGACCTTCCCCTT
GGACCTGTTCAAGACGCTTCTACAGGCGGAGAGGATAAGTAGGGGAGAGC
GCGCCACCCACCAAGCCTATCGGAGTCTCGTCCTCAGTATATTCAAGGAG
GCCGTGGCAAAGGAACAGGGGGGATACATGAATTTATGGCGGGGATTGAC
GCCGGCCTGTCTCCGGCACATTGTCTATTCCGGGTCGCGCCTGGGTCTGT
ATGAATTTTGGCGCGAAGACGTTCTGGGACGGGACGCAGACGGCAGCTTT
CCCCTTCACAAGGCCGTAGCCGCAGGGATGCTTTCGGGGGCGATTGGTCA
ATTTTTCTCTTCCCCCGCCGACGTGGTCAAGGTCCGGATGCAAACGGAAG
TAGGCCGTCGCCGCGCGGGCCTCCCTCCTCTCTATCGCTCCACCCGCGAG
GCCTTCGTGGCGATTTTCAGGGAGGGTGGGCTACGCGGGCTTTGGCGAGG
ATGGGTACCGAATTGCCAACGCGCAGCACTCGTGCAGCTTGGGGATTTGA
CTACCTACGACTGTACCAAACAGTACCTCCTGCGGGATCAGAAGGAGGGC
GGATGGGCCTTGGAGGATAACGCGCGGACGCATGCCTGTGCCTCGCTGGC
TGCTGGCTTGGTGGCAGCTTTCCTGGGGACGCCCGCGGACGTGGTCAAGA
CGCGCTGTATGAACCAGCCCTGCGACGCGGTCACGGGGAAAGGCTTGTTG
TACCGGTCGTCTTTCGACTGCCTGCGGAGCGTGGTCCGGGACGAAGGGTA
CCAGGCGCTCTGGCGAGGCTGTTTTCTGAACTGGCTGCGGATGGCCCCCT
GGTCTCTGGCGTTTTACTTGTCTTTCGAGCACCTGAGGCGCATGTCGGGC
CTTCGTTCCTTCTGA

Coding sequence (CDS) from alignment at KK037247.1:532341..533555-

>rna8086 ID=rna8086|Name=rna8086|organism=Nannochloropsis gaditana|type=CDS|length=960bp|location=Sequence derived from alignment at KK037247.1:532341..533555- (Nannochloropsis gaditana)
ATGGGCAATCCAAATACATCGGGTCTCAGTTTTGGTACCATTTATGGCTT
GTCTTGCCTGTCGGCGTGCGTGGCTGAAACCGTGACCTTCCCCTTGGACC
TGTTCAAGACGCTTCTACAGGCGGAGAGGATAAGTAGGGGAGAGCGCGCC
ACCCACCAAGCCTATCGGAGTCTCGTCCTCAGTATATTCAAGGAGGCCGT
GGCAAAGGAACAGGGGGGATACATGAATTTATGGCGGGGATTGACGCCGG
CCTGTCTCCGGCACATTGTCTATTCCGGGTCGCGCCTGGGTCTGTATGAA
TTTTGGCGCGAAGACGTTCTGGGACGGGACGCAGACGGCAGCTTTCCCCT
TCACAAGGCCGTAGCCGCAGGGATGCTTTCGGGGGCGATTGGTCAATTTT
TCTCTTCCCCCGCCGACGTGGTCAAGGTCCGGATGCAAACGGAAGTAGGC
CGTCGCCGCGCGGGCCTCCCTCCTCTCTATCGCTCCACCCGCGAGGCCTT
CGTGGCGATTTTCAGGGAGGGTGGGCTACGCGGGCTTTGGCGAGGATGGG
TACCGAATTGCCAACGCGCAGCACTCGTGCAGCTTGGGGATTTGACTACC
TACGACTGTACCAAACAGTACCTCCTGCGGGATCAGAAGGAGGGCGGATG
GGCCTTGGAGGATAACGCGCGGACGCATGCCTGTGCCTCGCTGGCTGCTG
GCTTGGTGGCAGCTTTCCTGGGGACGCCCGCGGACGTGGTCAAGACGCGC
TGTATGAACCAGCCCTGCGACGCGGTCACGGGGAAAGGCTTGTTGTACCG
GTCGTCTTTCGACTGCCTGCGGAGCGTGGTCCGGGACGAAGGGTACCAGG
CGCTCTGGCGAGGCTGTTTTCTGAACTGGCTGCGGATGGCCCCCTGGTCT
CTGGCGTTTTACTTGTCTTTCGAGCACCTGAGGCGCATGTCGGGCCTTCG
TTCCTTCTGA

Synonyms

Publications