rna8082, rna8082 (mRNA) Nannochloropsis gaditana

Overview
Namerna8082
Unique Namerna8082
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length369
Alignment locationKK037247.1:522626..523479 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100126g27.3019.mrna
Orig protein idgnl|cribi|Naga_100126g27.3019
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:522626..523479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100126g27gene7826Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8082rna8082-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22593.1cds8060Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8082 ID=rna8082|Name=rna8082|organism=Nannochloropsis gaditana|type=mRNA|length=369bp
ATGAGATGCGTACTTGACACTTGCATGACTTTCTTAGGCAATCGACCCAA
ATCTTTGTGTTTCATGGCATATATCCCCTTGTCACCAACACAAGCAATGG
AAGCCTCTTCACGTGACATATCTCGCCGGCATAGCCATTTTACTCAGGAT
TTCTTGGATCAGAAGCCCATGATAAAAGATTTTTTGCGTTTCTTGATCAA
AAACTCATTTTATGTCGCGTTTGACACCTTTTTATGCGGTGGATGTTTAA
CAACAACAATTCTCGAAGCATTAGAACTTATCTGGGAAGACCAAGTGACA
TATGATGTATGTAATATCAATCTGTCGGATTTTCGTCGTTGGAGTCTCGT
AATTACGTTGCGTGTCTGA
back to top

protein sequence of rna8082

>rna8082-protein ID=rna8082-protein|Name=rna8082|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
PPPPSSPASHPAAASAGLGPSQADDGEGGVQGALRSAPPPASPLLSSSPP
SEEAAPEEGVESFPFPSFLDLESAYPLLDNARPAADKPGATPRTSTPAPS
VGGGNASSQSRRASSVGAKA
back to top

mRNA from alignment at KK037247.1:522626..523479+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8082 ID=rna8082|Name=rna8082|organism=Nannochloropsis gaditana|type=mRNA|length=854bp|location=Sequence derived from alignment at KK037247.1:522626..523479+ (Nannochloropsis gaditana)
ccccccccgccttcctcccccgcctcgcaTCCTGCTGCAGCCTCCGCAGG
CCTAGGGCCAAGTCAAGCAGACgacggcgagggcggggtccaGGGCGCAC
TGAGatctgcccctccacctgcctcccctctcctctcctcttctccgccc
tcggaggaggcagcaccggaggagggggtcgagtcctttcccttcccctc
ctttctggACCTCGAGTCGGCTTACCCTCTCCTCGACAACGCCCGACCGG
CCGCGGACAAGCCGGGAGCCACGCCCCGCACCAGCACACCGGCCCCTAGT
GTCGGCGGCGGCAACGCCAGCTCTCAAAGTCGGCGGGCGAGCAGCGTAGG
CGCGAAGGCCTGAGAGGGTCGCTGCACGTTTTTGTAGGATAGGGCCGGCG
TTGCAAGCGCCTGGAGACGGGCCTTCGACGCGGACAGGTCGCAGAGATGT
GTGGAGAACGTCAAAGgcagggagatgaggggctCAAAGAAAGAACGACA
CGCCACAAGTCCCTGACGGTGAAGAACCCTGGTATGCTCACGTGGTCCTC
TTGGCCCATTGCGTTCTCCCTGCGTGCTCCTGAAGGGCTGACCGCTCATG
CCAATCATGGGTCGCGTTCGCTCCATTTGGCGCCCAATTTTGCTTCCCGA
GAAACTCGCAAAGCGAGGAGCCTGAAGCGGCGACGGCCAGAGGGTCTATA
GCCGGAGCCCGTGGTATTGTCAGGTCTGTCGCACGCAgccatcccccctt
cctttgaTCTTGAGGGTCGAATATCGCCATGAGGCCGAGCGAAAGGAACG
AACCCAAGCATCGCCTCGTCACGACTCGAAAGAAACATTAAGCAAGACAA
TGAG
back to top

Coding sequence (CDS) from alignment at KK037247.1:522626..523479+

>rna8082 ID=rna8082|Name=rna8082|organism=Nannochloropsis gaditana|type=CDS|length=363bp|location=Sequence derived from alignment at KK037247.1:522626..523479+ (Nannochloropsis gaditana)
ccccccccgccttcctcccccgcctcgcaTCCTGCTGCAGCCTCCGCAGG
CCTAGGGCCAAGTCAAGCAGACgacggcgagggcggggtccaGGGCGCAC
TGAGatctgcccctccacctgcctcccctctcctctcctcttctccgccc
tcggaggaggcagcaccggaggagggggtcgagtcctttcccttcccctc
ctttctggACCTCGAGTCGGCTTACCCTCTCCTCGACAACGCCCGACCGG
CCGCGGACAAGCCGGGAGCCACGCCCCGCACCAGCACACCGGCCCCTAGT
GTCGGCGGCGGCAACGCCAGCTCTCAAAGTCGGCGGGCGAGCAGCGTAGG
CGCGAAGGCCTGA
back to top
Synonyms
Publications