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Properties
| Property Name | Value |
|---|
| Product | Pheromone shutdown, TraB |
| Orig transcript id | gnl|cribi|Naga_100106g22.1451.mrna |
| Orig protein id | gnl|cribi|Naga_100106g22.1451 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:467635..468991 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna808 ID=rna808|Name=rna808|organism=Nannochloropsis gaditana|type=mRNA|length=2199bp
ATGCCCTCACGTAGCACCATCGAGGTCATCAAGGGCGACAACAACCAAAA
TAACTTGGCGTACTGCCTTGTTGTCGTCATACTCTTGGCAGTGGATGCAA
ACCCCATTAAGGTCATCGCTACTTCCATCGGTATTCCTGCCCGATGGTTC
GCATACCCATGCCTGGCCATGCTGGTCCACCTCTTCCTCACTCACTCCCA
AGAGTTCCTGTACGACGGGGTCCGCGTTTTCTTCCGCTCCATCCTCTCCA
TCTTCTTCCGGCAGATCGACATCGTGGGCATCGACAACATCCCCAAGCAT
GGACCGATCATCTTCTCCGGAAACCACTCCAACCAATTCGTGGACGGCCT
GATGGTCTTGACGACGGCGCAGCACCGGGTGGGTTTTCTGATCGCAGAGA
AGTCTTACAAACACCCTGTGGTCGGGACTTTTGCCAAGCTTGCGGGCGCG
GTGCCCGTCACTCGCCCGCAGGACAGCGCCCGGCCGATGCAAGGGACCAT
TGTCATCCGTGGGCGACACGTCGAGGGCCAGGGTACGGTGTTTTTGAGGG
ACCTGGTGCCCGGTGATAAAGTCCGGATTAAAGGGCAGGCCGATCAGTAC
AAGGTGGAGACGGTGGCCTCCGACGAGTCTCTGACCCTTTCCGAAGACGG
ACCTTTGCCCCCCGCGCAGGCAACGGCGGCCAGTGCCTTCGAAAAACTGG
CGAAAGTGGACCAGAGCCGCGTCTACAACGCCGTGTTCGAACACTTGAAA
CAAGGGCGGTGCATCGGGATCTTTCCTGAGGGCGGCTCCCACGACCGGAC
CGACCTGCTCCCTCTCAAGATGGGGATCGCCCTGATTGCCCTGGGGATGG
TGGACAAGTACAACATCACTGTACCCATTGTCCCCGTGGGGCTCAACTAC
TTTCGCGGCCACCGGTTCCGAGGACGGGTGGTGGTCGAGTTCGGGCCGCC
CATCCGCGTCCCTGAGGACTTGATAGAGCTGTACCGGTCCAACAGGCGCG
AGGCATACCAGCGGCTGATGGCGGAAGTGGAGGACGGGATGCGGGCCACC
CTGGTGACGGCGCCCGACTACCACGCCCTCCACTTGGTCTACACGGCCAG
GAGGCTCTTCCAGAAGGACAACTGGATCCCGAGTCCCGGGGAGAAGATGG
ACTTGAATCGGCGCTTCGCGGAGGGCTACAAGATCCTTATGAGCAAGTAC
GGAGACGAGCGCCCGGCGGCTTTGAACGAATTGGAGCGGCGACTGAACGA
TTACCAAAAGACCTTGCACCGTCTGGGCCTGCGGGACTACCAAGTACCCA
CCCTGCGGGAGGACGACTCCCTCAGGCTCTGCTATACGATCGCTCACCTT
TTCCTGGTCTTCACATTGGCCATGCTTCCCTCCCTTGTTCTGAACGCACC
TGTGGGTGTCATAGCCCGCTTCGTCTCATCGCGGGAGCAAAAAAAAGCCC
TGGCCGCCTCCCGGGTCAAAATCGAAGCGCGCGACGTGATCATGTCAAAA
AAGATCACCCTTTCTATTGTCCTGGTCCCCACACTCTGGATTGTCTACGC
CGTCCTCCTCCTCCGCTTCACCTCCCTACCCCCTTCCACTGTCGCCGTGC
TCTTCTTTTCCTGTCCAATCTTCTCCTATCTGGGAGTGATGGCGACTGAG
GCAGGCATCCTCGACGCCAAGGACCTGAAGCCTGTTCTGCTCCGTCTGCT
TCCTGGAGCCCGCAAGAAGATGGCCACGCTGCCCGCAGAGCGCACCCTAC
TTCAACATGATCTAAGGGCGTACATTCATGAAATTGGCCCCGAACTCGGT
TCTCTTTATACGGACAAGACTGTAAAATGGGAAGAATACATTCGCAAGTC
ATCATCCGCCACGGACCTCCAATCACTGCTCCCGAGCGGCAGTCCCAACG
GGAAAGACGGCCGTGCTGAGACGGAAGACACGCGAGGGGAGAGGAACGGC
CACGCTAGCAGCTTGTCTTTCACGTCACCGGCCCTTGCGCAAGCTGTGAA
TGGACGAGGCACACCTTCACCGCTTACTTTTAAGCCAGATGAGCAGTTCA
ATAAGAAAGATGCAAAGTGTACATGTGTGTTCCGCTATTTGATAGGCTCC
AAACTCTCGAATAACACGCGTCCAGTGAAGCTTTTTTCACTAGAAGAAAG
AAAAATGCGATATGCTAAGTACTTGGCTTATACAAAAAAACTGCGCTGA back to topprotein sequence of rna808 >rna808-protein ID=rna808-protein|Name=rna808|organism=Nannochloropsis gaditana|type=polypeptide|length=451bp
MSFTWPTLWASVLLLFWAQCPSAVSFTLTGHGDLPRPRRPPPALFIATMS
THPANDQDSRAVPARPTNLDIDRRGVLAAGTGMFASSWLLTAPSTSTTPA
VVHATTTLQPPSQASLKPSGLCDDAISHLRNPKTGQDIYMIGTAHISNAS
ALLVRSTIRELRPQTVMLELDASRIGRLAKNTSNSIPKPSSMGRSEPSRR
VVIVASSSSDSPDVPPATFVIPGPASTALQPPPSDPGFLSKQEEGKAGFL
RAALGELTRVGSGFRERLVGLGAMVVGQVISGLYRGLDKMGFVSGQEFIV
AIDEGRKVGADLLLGDQDVQVTLRRLSDALSRSELGKVREMESPTRSPAA
RELEARGIRMGDNAADISVAMEALKERSSVRTLMASLQQELPEVYKAMIE
ERDAYMTASLLGCGSQTIVGVVGIGHLDGIERNLGREGFVRVPCRPEPVR
R back to topmRNA from alignment at CM002456.1:467635..468991+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna808 ID=rna808|Name=rna808|organism=Nannochloropsis gaditana|type=mRNA|length=1357bp|location=Sequence derived from alignment at CM002456.1:467635..468991+ (Nannochloropsis gaditana)
GATGTCTTTCACATGGCCTACGCTTTGGGCGTCCGTACTCCTGCTTTTTT
GGGCACAATGTCCAAGCGCTGTTTCCTTCACCTTGACGGGCCATggcgac
ctcccccgccctcgtcgacctccccccgccctcttcatTGCCACCATGTC
CACGCATCCTGCGAATGACCAAGACAGCAGGGCTGTACCAGCACGGCCAA
CCAATCTAGATATTGATCGACGGGGGGTTTTGGCTGCTGGAACGGGCATG
TTTGCGTCCTCCTGGCTCTTgaccgctccctccacctcaaCCACGCCGGC
CGTCGTTCATGCTACCACGACGctccaacctccttcccaagCCAGTCTAA
AACCTAGTGGACTGTGTGACGACGCCATCTCACATCTTCGTAACCCTAAG
ACCGGCCAAGACATTTATATGATCGGTACAGCGCATATAAGCAACGCTAG
TGCACTCCTAGTGCGCTCCACCATCCGCGAGCTCCGCCCGCAGACGGTGA
TGCTAGAGCTGGACGCCAGCCGTATCGGCCGCCTTGCCAAAAATACCTCG
AATTCTATCCCAAAGCCCTCTTCGATGGGCAGGTCGGAGCCGAGTCGACG
CGTGGTCATCGTCGCGTCAAGCAGCAGTGACAGTCCTGACGTTCCCCCGG
CTACCTTTGTCATCCCAGGTCCGgcgtccaccgccctccaacccccACCC
TCCGATCCAGGCTTCCTCTCAaagcaagaagaggggaaagccggCTTTTT
GCGCGCGGCCTTGGGAGAGCTGACGCGGGTGGGTAGCGGCTTCCGGGAGC
GCTTGGTGGGCCTCGGCGCGATGGTTGTGGGGCAGGTCATCTCGGGGCTC
TACCGGGGCCTGGACAAAATGGGCTTCGTGTCCGGGCAGGAATTCATAGT
CGCCATTGACGAGGGCCGAAAAGTGGGCGCGGACCTGCTGCTGGGCGACC
AGGACGTGCAAGTGACGCTTCGACGCTTGTCGGATGCGCTGTCCCGGAGT
GAACTGGGAAAAGTGCGCGAAATGGAGTCCCCTACCCGCTCCCCCGCCGc
gagggagctggaggcccGCGGCATTAGAATGGGGGACAATGCGGCGGATA
TCTCGGTGGCCATGGAGGCACTGAAAGAGCGCTCGTCTGTGCGCACGCTC
ATGGCAAGCTTGCAACAGGAGCTGCCGGAAGTGTACAAGGCGATgatcga
ggagagggacgccTACATGACGGCTTCGTTGCTGGGCTGCGGAAGTCAGA
CAATCGTGGGAGTCGTGGGCATCGGTCATCTAGACGGAATTGAGAGGAAc
ttgggaagggagggttttGTGCGGGTTCCGTGTCGGCCAGAGCCGGTCAG
GCGGTAG back to topCoding sequence (CDS) from alignment at CM002456.1:467635..468991+ >rna808 ID=rna808|Name=rna808|organism=Nannochloropsis gaditana|type=CDS|length=1356bp|location=Sequence derived from alignment at CM002456.1:467635..468991+ (Nannochloropsis gaditana)
ATGTCTTTCACATGGCCTACGCTTTGGGCGTCCGTACTCCTGCTTTTTTG
GGCACAATGTCCAAGCGCTGTTTCCTTCACCTTGACGGGCCATggcgacc
tcccccgccctcgtcgacctccccccgccctcttcatTGCCACCATGTCC
ACGCATCCTGCGAATGACCAAGACAGCAGGGCTGTACCAGCACGGCCAAC
CAATCTAGATATTGATCGACGGGGGGTTTTGGCTGCTGGAACGGGCATGT
TTGCGTCCTCCTGGCTCTTgaccgctccctccacctcaaCCACGCCGGCC
GTCGTTCATGCTACCACGACGctccaacctccttcccaagCCAGTCTAAA
ACCTAGTGGACTGTGTGACGACGCCATCTCACATCTTCGTAACCCTAAGA
CCGGCCAAGACATTTATATGATCGGTACAGCGCATATAAGCAACGCTAGT
GCACTCCTAGTGCGCTCCACCATCCGCGAGCTCCGCCCGCAGACGGTGAT
GCTAGAGCTGGACGCCAGCCGTATCGGCCGCCTTGCCAAAAATACCTCGA
ATTCTATCCCAAAGCCCTCTTCGATGGGCAGGTCGGAGCCGAGTCGACGC
GTGGTCATCGTCGCGTCAAGCAGCAGTGACAGTCCTGACGTTCCCCCGGC
TACCTTTGTCATCCCAGGTCCGgcgtccaccgccctccaacccccACCCT
CCGATCCAGGCTTCCTCTCAaagcaagaagaggggaaagccggCTTTTTG
CGCGCGGCCTTGGGAGAGCTGACGCGGGTGGGTAGCGGCTTCCGGGAGCG
CTTGGTGGGCCTCGGCGCGATGGTTGTGGGGCAGGTCATCTCGGGGCTCT
ACCGGGGCCTGGACAAAATGGGCTTCGTGTCCGGGCAGGAATTCATAGTC
GCCATTGACGAGGGCCGAAAAGTGGGCGCGGACCTGCTGCTGGGCGACCA
GGACGTGCAAGTGACGCTTCGACGCTTGTCGGATGCGCTGTCCCGGAGTG
AACTGGGAAAAGTGCGCGAAATGGAGTCCCCTACCCGCTCCCCCGCCGcg
agggagctggaggcccGCGGCATTAGAATGGGGGACAATGCGGCGGATAT
CTCGGTGGCCATGGAGGCACTGAAAGAGCGCTCGTCTGTGCGCACGCTCA
TGGCAAGCTTGCAACAGGAGCTGCCGGAAGTGTACAAGGCGATgatcgag
gagagggacgccTACATGACGGCTTCGTTGCTGGGCTGCGGAAGTCAGAC
AATCGTGGGAGTCGTGGGCATCGGTCATCTAGACGGAATTGAGAGGAAct
tgggaagggagggttttGTGCGGGTTCCGTGTCGGCCAGAGCCGGTCAGG
CGGTAG back to top
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