rna8076, rna8076 (mRNA) Nannochloropsis gaditana

Overview
Namerna8076
Unique Namerna8076
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1319
Alignment locationKK037247.1:513650..514192 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100528g1.9500.mrna
Orig protein idgnl|cribi|Naga_100528g1.9500
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:513650..514192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100528g1gene7820Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8076rna8076-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22614.1cds8054Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8076 ID=rna8076|Name=rna8076|organism=Nannochloropsis gaditana|type=mRNA|length=1319bp
AGGCGCCACAAAAATCGTGTGTGCGTGTGACTAGCAGGCGTAACGAAATG
TGGTTTGACATATTCGTGTTTATGCTACGATCACCTCCTCACTATAACCC
TTTCCTCCCTTGTTTAACTCAATTTATTCCAGCAGGAACGTCAGAGTCTG
AAGAGCAGGCGCAAAAACGGCTCATACGCTTGCCACTTCCGCAACATACC
CTTGAAACACTTGTATGCGCCTTTGTTTCCTCTCCTTTTCTTCCATCTTC
CGTGTTCGATCACTGCGCAACGGGAAGCTAGCATCGGTTTTGGTGATAGG
AGGCTTGAGTAGCGTATCTTCCGGGACTGGAATGGCAGCACGCGAGACTA
ACACAACGGGTGCTTCCTGTGCCGGATCGTCTTCCACGCGCATTGCCTGC
TCCACCCCAACCTCCAGTCCGTCCTCGCACTCGACGCATCACTCCTATCG
GCCTCGCGACGGTCTCTACACCGCCCCCCCATCCTCCTTCAAACTACAGC
AAGTGGTGATCATCGCCCGGCACGGAGACAGGGCCCCGATAGCGCGCAAC
GTCGGGCAGGCAGTGCAGGATAGTCCGGAGACCCAGGCTCTCTGGCTCTC
CAAATTGCCGTCTTCGCAGGAGGTAGAGGCGTGGACCTCCGCCTTTCCCC
TCGCGGACCCCAGCCTCCGGCCCGTCGACTACGACGAGCATCCTTACGCG
CAGCTCACCCGCAAAGGCGCGCAGGAGCTCCAGGCCCTGGGGAGGCACCT
GCGAAAACGCTACGTGACGGACTTGAAGTGGCTCCCGGCCAGCTTGCACG
CCTCGGGAGGGCATGCTCCACACGCATCAGGCGGCCTTTCCTCCGCCCCT
TCCTCCTCCTCCCCCCCCTCCTCCTCCCCCCCCTCGTTCTTGCACGCGCG
CGCCACCAACATCCGCCGCACTCAGCAATCCGCGCAAAACCTCCTGCTCG
GCCTCTACCCTGACGGCGCCCCTCACCCCTCCCCTTCCTCCTCAGCCCCC
CCCCTCGCCATCCAGGTCAGGCCGACCGCCTCGGAGACTCTGTACCCCAA
CGCTGACCGCTCCTGTTGCCGCCAGGGGGAAATCATCGCCGAGCTCGCGT
CCCGGCACTTCGACATGCCCCGCGCGCACGTGGAAGACATGACGCGGGAG
GCCTTCGCCCGGCTGGGCCTGGTGCCCCATCCTGAGCCCGCCTCGGCTAA
GGTCGATCCCGCCGTCCCCCCCCCCGCCCCCCCACTCCCGCGTGCCCTGG
AACCAAGTGCGCGAGGTGTGGACCTGCCACGCCGTCCACGACCTACCCCT
ACCCCCTCCGGTGAACGGG
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protein sequence of rna8076

>rna8076-protein ID=rna8076-protein|Name=rna8076|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MPRTWCWSWRSGRGRGPGRRGRGTLSGCCTMTRSGCCGPRRGTRTWGVGG
IRFGKFRADCGNWCLRTSRRNAGADTRRCPREEGWSTLAQPSSEGWSTLA
QRSSEGGREGGGRKGGVEVRLGGRGRRWRETPEDTLQ
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mRNA from alignment at KK037247.1:513650..514192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8076 ID=rna8076|Name=rna8076|organism=Nannochloropsis gaditana|type=mRNA|length=543bp|location=Sequence derived from alignment at KK037247.1:513650..514192+ (Nannochloropsis gaditana)
gagggggcgggggagaagctAGTGGTGTACGCAGGGCACGATTCGACCGT
GGTGCCCCTCCTAGTCGCCTTGGGCCTGTGGGAAGACGTGTGGCCTCCCT
ATGCCGCGAAcctggtgctggagctggcggagcgggaggggccgggggcc
ggggaggagggggagaggcacTTTGTCAGGGTGCTGTACAATGACGAGGA
GCGGATGTTgtgggccaaggagggggacgcggACGTGGGGGGTCGGTGGT
ATTCGCTTCGGGAAATTTCGGGCAGACTGCGGAAATTGGTGCCTAAGGAC
TTCGAGGAGGAATGCCGGTGCCGACACGAGGAGAtgtccgagggaggagg
ggtggagcaCATTGGCTCAGCCATCAAGTGAGGGGTGGAGCACATTGGCT
CAGCGATCAagtgagggggggagggaagggggaggcaggaagggaggggt
tgaggtccggctcggagggcggggacggcggtGGCGTGAAACGCCAGAAG
ACACCCTCCAGTGATCCGACGCAACGTGTCTTTCAAAATTTGA
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Coding sequence (CDS) from alignment at KK037247.1:513650..514192+

>rna8076 ID=rna8076|Name=rna8076|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at KK037247.1:513650..514192+ (Nannochloropsis gaditana)
ATGCCGCGAAcctggtgctggagctggcggagcgggaggggccgggggcc
ggggaggagggggagaggcacTTTGTCAGGGTGCTGTACAATGACGAGGA
GCGGATGTTgtgggccaaggagggggacgcggACGTGGGGGGTCGGTGGT
ATTCGCTTCGGGAAATTTCGGGCAGACTGCGGAAATTGGTGCCTAAGGAC
TTCGAGGAGGAATGCCGGTGCCGACACGAGGAGAtgtccgagggaggagg
ggtggagcaCATTGGCTCAGCCATCAAGTGAGGGGTGGAGCACATTGGCT
CAGCGATCAagtgagggggggagggaagggggaggcaggaagggaggggt
tgaggtccggctcggagggcggggacggcggtGGCGTGAAACGCCAGAAG
ACACCCTCCAGTGA
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Synonyms
Publications