rna8071, rna8071 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8071
Unique Name	rna8071
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1914
Alignment location	KK037247.1:500575..504294 +

Link to JBrowse

Properties


Property Name	Value
Product	CRAL-TRIO domain protein
Orig transcript id	gnl\|cribi\|Naga_100023g62.3953.mrna
Orig protein id	gnl\|cribi\|Naga_100023g62.3953
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:500575..504294 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g62	gene7815	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8071	rna8071-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22637.1	cds8049	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:500575..504294+
coding sequence from alignment at KK037247.1:500575..504294+

mRNA sequence

>rna8071 ID=rna8071|Name=rna8071|organism=Nannochloropsis gaditana|type=mRNA|length=1914bp
ATGGACGACGAGACGGCAGACCCGGGTGCGACAGCTACGTACCATGCAGA
GGATGTGCGTCTCCTCCATCACTATATTCGGTCTCTCATCGGACAGAAAC
TGTATGACTCTGCGGATTTGATTGGTGGCTTGCTGCTTTGTTGTACTCGC
CCCGCGATCATCTCTCATAGCCCTTCTATGTGGGACCTCCATGCTACCTC
TCTCGAGCTTTACGCCGATTCCTTGGTTGGGAAAGGTGAACGCTATCGGG
CCCTGTCTTTCTACCAGCAAGCTAATGCCCACCGGAAGTGTGCCGCCTCC
TCTTCCCTACGGTGCTCTCCAACTCAACTGCTCGGCCTTCCCCCCACATC
CCCTCCTTGCCCCCCCCCTTCTCTGCCCATCAACTTCAAAGAGGCTCGCT
GTCATCTCTCCCTCAACAAGCCCTCCCAGGCCTTACGGGCGCTTCTTTCC
GTGTCCACCTCGACAAGAGAATCGTCTGTTCCAGTGGCAGTCACCTTGGG
ACACGTGTACCGCCGCCTCGGAATGCAGCACGACGCTCAGACAGCCTACA
AAGATGCTGTTGGCCATGATCCCCTAGCGTTGGAGGCATTGATTGGACTG
GCGAAGACAGGCATGGACGAGGAGGACATTTGGAGGCTAGTGACCGGGCC
ATGGGCCCCTTGTGGTGGGGCAAGGCCCGAGGAAGGGGCACGGCGAGGGG
TCGGGAAAGGACGAGGAGGAAGCGACGAAGCCAAGGGTAGCTCCTCGCGT
CGACCCAGAGGTAGCCAGGCTTACGAAAGCGTCGACTCCCGGGGGAGGTT
GAGCAGTGATGAAAATAGCGTGTGGCAGGTCCTGCGGACCAAGACGCTGC
CCTGGCTGAAGGTCTGGGTACAAGCACATGTAGCCTTGGCCGCGCAAAAT
TGGGCGGTGGCCGCCGAGCGCTTCGGCGAGTTGGAAGTCCGCTATTTTCC
GAAGTCCACGCATTGCCTGTTGCAGCGAGCACGGGCGCAGGTGGGAATGG
ATCTGTACATGGACGCGCAGCAGACCTTTGGGCGGGCGGTTGAGGGGGAG
GGGGGGGGCGAGGTGATGGAGCACATGGATTATTACGCCGTGGTGCTCCG
GCAGAGGGCTGCAAAGGGGGAGCTGGCTCATTTAGCCCACCGACTGATGG
ATGTGGACACGAGGCGGCCGGAGCCGTGGATCGCAGCGGCCTTGCACAGC
GACCTGAAGGGGGAGAAGGAGAGCCCTTTGACGTTGGTGGAGCAGGCAAT
CAAGACGGATCACGAGCATGTCCTAGGCTACCAGGTACGAGGCACGTTGC
TGCTTGCGTTAGGGAAAGCGGAGGCGGCGGCTTCGTCCTTCCTTCAGGGC
AGTCGGCTCCACAAAGACATGAACGGCTACAAAGGCTTGGTGGACGCCTA
TTTGGTCCAACACAAATTTAAAGAGGCATTAGGGTGTGCAAAGGAAGCCT
TTTCCGCCATGCCAAAGAGCGCCACGGCCATCACCTTGGTGGGTCGCGTC
CTGGCCCAGTTGCCGGAGGGGCGCGAGAAGGCCAAGCGTGCCTTCCAAAG
GGCCCTGAGCATGAACCCGTCCACGGTCGATGCCCTTTTGGCCCTGGCAG
ACTTGCATCTTGGGGCACAGGAATACGATAAATGTATACATCTGTTGTCG
AGTAGTTTGCAAAATAGTGGGCATGATTTCTTGCATACCAAGTTGGGGGA
GGCCTATGCTATCAGTGGAGATTTTTCAAAGGCTCTAGCATCTTTTAACA
CTGCTGTTTCCATGAATCCATCTTCTGCACCAGCCACGGCTGGGCTGGAA
AAACTAGAGAAGCTTTTGCGGGGGGTTGAGCCAGAGGAGGATGGGGAGGG
GGAGGAGGTGGACGAGGAGGTTGAGGCAGAGGAGGATGATATGGTGGAGG
GCACGACAGACTAG

protein sequence of rna8071

>rna8071-protein ID=rna8071-protein|Name=rna8071|organism=Nannochloropsis gaditana|type=polypeptide|length=869bp
MPASSSRRSPSLTTKTVILAALFPVAALSFTLPFRHRLREPNDVHHSFRE
KTHAMHHGSNLLAGGPLRATASGDRGFEVLDAVPGLAELQRSGAMTDEKG
VSSPYTGTTFEEDLFLIDKGTDLTALLEPMATKELFFGDGQPSFVPLTDL
FDQGVSATEEAVAKVNADMKEARDSRGIAPFIQGLRKAILGGSMAVGSGA
RRYAGRLCIGATQYVSSHTRLLCNVVAHLLDQARVQVLKARLMMVSHLGE
LLSQVEAGFRPRPTRVGDRFTRPGARAEPRALSSESEQVGVQAVLAVLRA
RWAKARALARAYHGAVQAAAGGKLRGARRAVEAWTQRLGRRGEGAATQWP
GQVQKALRRSLLKGGRLVSHLKARGVERWVLGERGGKGLMVERQADKDVG
RGVSGVVSGFSEHAMKAEEALSLPVSAPALPVPLPVFPMAHVLGGSDELT
LRRREEQGVLLLVPSFDDEPRMNEEEVVVGEAEEEVDGPGGWEGVEAGDV
SEGGAEAGEERVEDLEVVEVGDRVEDVMESGVEEQGGSEEEEGEDGDDDH
YDGLGLTTTTKPQAESEEEDWQEAREEEAAEGGAWLLRFGGRRVSDEERA
VMEKLQARLVMLPESLTHWVSPGDLLRYVRAFKHVEDAWVALRKTCVFRR
ERGVDVALRPDLAEKFAGSPLAEEMFWMGLDREGDPVLVFRTALHQPGRF
TTEEYLAYLLYLIEKGRELYGLGQRTQISFLVDRKGGGLANQDPKVVLAL
VPVLQAHYPECLKKTFIAPVNVIFQFIWKVFTLVLAKDTANRVRLLSAGD
LARNGGGLREVFYDGQLMKHLGGTLEGYEKGGRGKGEAGTEASRRPCLPR
EEACRRSRRRDGTQGDGIM

mRNA from alignment at KK037247.1:500575..504294+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8071 ID=rna8071|Name=rna8071|organism=Nannochloropsis gaditana|type=mRNA|length=3720bp|location=Sequence derived from alignment at KK037247.1:500575..504294+ (Nannochloropsis gaditana)
GCCGCCCACCTTCGTCTGTTACAATTCGTCGTTCTTCAATTCGCGTGTTT
TCAACTTCTAAGCGCGAGCGCGCCATGTCTGGTCTTACAGCAAGCTATTT
TTGTCCTCGTGAAAGCGCGTTCCCCCATCTGGCGGAAATATGTTTCTTCT
TGGGCGGCAAAGAAGCGGCTtcacatttttcttttcatgAAACAATTGTA
CACCTGATGTGTTTCCTTCTGCAAACTTCGCTTTGTATAGCTCAACACTA
TTTGACTGATGCAATGGCTTCCCTTTTGCGGCGAATTAAGTGCGCATCTT
TGTGTTTCCTTGTGCCATATTCCGTTTGCCGAAAGTGCTTCAACATCACT
AATTTTTGAATTTTTTTCTGTTTGCGAGTCATTGACCTTACAAACATCGC
GTACCAATGTCACAGACAAATCCTTGAAGCTTTGCGTCTGAAGCTAATCA
TGCCGGCCTCTTCGTCGCGTCGGTCACCTTCTTTGACCACGAAGACGGTA
ATTTTGGCCGCTTTGTTCCCTGTCGCGGCCTTAAGCTTCACTTTACCCTT
CCGACACCGCCTACGGGAGCCCAACGATGTCCATCACAGCTTTCGTGAAA
AAACTCATGCAATGCATCACGGTTCAAATCTTCTCGCCGGAGGGCCTTTG
CGAGCAACGGCCTCTGGGGACAGAGGATTCGAGGTTCTAGACGCTGTCCC
GGGACTGGCGGAACTCCAGCGTTCCGGCGCGATGACGGACGAGAAAGGAG
TATCGTCACCCTATACCGGCACCACATTCGAAGAGGATTTGTTCCTCATT
GACAAGGGGACAGATTTGACTGCCTTGTTGGAACCGATGGCGACGAAAGA
GTTGTTCTTCGGGGACGGccagccctccttcgtccctttgACCGACTTGT
TCGACCAGGGCGTATCGGCCACGGAAGAGGCCGTCGCCAAGGTCAACGCG
GACATGAAGGAGGCCCGGGATTCTCGAGGCATCGCTCCTTTCATCCAAGG
CCTGCGCAAAGCTATCCTGGGCGGCAGCATGGCAGTGGGGAGTGGGGCCC
GTCGCTACGCCGGGAGGTTATGCATAGGCGCCACGCAGTACGTCTCCTCG
CACACCCGGCTCCTCTGCAACGTGGTTGCGCATCTTCTTGACCAAGCGCG
GGTCCAAGTGCTGAAGGCACGCCTCATGATGGTTTCGCACCTCGGCGAGT
TGCTCTCTCAAGTCGAAGCAGGCTTTCGTCCCAGGCCGACGCGCGTGGGC
GACCGATTCACGCGCCCCGGCGCCCGGGCCGAGCCGAGGGCCCTGTCCTC
GGAGAGTGAGCAGGTCGGCGTCCAAGCAGTGCTGGCAGTCCTGCGAGCTC
GGTGGGCGAAGGCTCGAGCGCTGGCCCGTGCGTACCACGGGGCCGTGCAG
GCTGCCGCGGGTGGCAAACTCCGAGGCGCGAGGAGAGCGGTCGAGGCCTG
GACCCAGCGCttggggcggcggggagagggggcggcaACGCAGTGGCCAG
GCCAGGTGCAGAAGGCGTTGCGTCGATCCCTCTTGAAAGGTGGGCGGTTG
GTCTCACACCTCAAGGCCCGGGGAGTGGAGCGATGGGTCCTCGGGGAACG
TGGCGGGAAGGGCCTGATGGTGGAGAGGCaggcggacaaggacgtCGGCC
GTGGAGTGAGCGGCGTTGTTTCTGGTTTCAGCGAGCACGCGAtgaaggca
gaggaggcgctctcgctccctgtCTCGGCGCCCGCACTCCCGGTTCCCCT
GCCCGTGTTCCCTATGGCCCATGTcttgggagggagcgacgagTTAACcc
tgcggcggcgggaggagcagggggtgCTACTGCTAGTGCCCTCTTTTGAC
GATGAGCCTCGgatgaacgaggaggaggtggtggtgggagaggcggagga
ggaagtagacggcccggggggctgggagggcgtggaggcgggagatgtct
cagagggcggggcggaggcgggggaagagagggtggaggacctggaagta
gtggaggtgggagacagggtggaggacgtgatggagagcggtgtggagga
gcaaggtgggagcgaggaggaggagggcgaggacggcgatgATGACCACT
ACGACGGGCTGGGGCTGACGACCACGACCAAGCCGCAAGccgagtcggag
gaggaggactggcaggaggcaagggaggaagaggcggcggagggaggggc
ctggCTGCTTCGGTTTGGGGGCCGGAGGGTGTCAGACGAGGAGCGCGCGG
TGATGGAGAAGCTGCAGGCCCGTCTGGTCATGCTCCCGGAGTCCTTGACG
CATTGGGTCTCCCCGGGCGATTTGTTGCGGTACGTGCGCGCTTTCAagca
cgtggaggacgcgTGGGTGGCCCTCCGCAAGACCTGCGTCTttcggcggg
agaggggtgtGGACGTGGCCCTGCGGCCTGATCTGGCGGAGAAATTCGCG
GGCTCGCCGCTGGCCGAGGAGATGTTCTGGATGGGCCTCGACCGCGAGGG
AgatcccgtcctcgtcttccgcacCGCCTTGCACCAACCCGGGCGCTTCA
CGACGGAGGAGTACTTGGCCTACCTCCTCTACCTGATCGAGAAGGGCCGC
GAGCTCTACGGCTTGGGTCAGCGCACCCAGATCTCCTTCCTTGTGGACCG
CAAGGGGGGCGGACTGGCCAACCAGGACCCcaaggtggtgctggcgctgg
TTCCTGTGCTGCAGGCGCACTATCCCGAGTGCTTGAAGAAGACTTTCATC
GCGCCCGTCAACGTAATCTTCCAGTTCATCTGGAAGGTGTTCACGCTCGT
GCTGGCCAAGGATACAGCGAACAGGGTCCGGCTGCTTTCGGCGGGGGACC
TCGCGCGAAACGGAGGGGGTCTGCGTGAGGTTTTTTACGACGGACAACTG
ATGAAGCACTTGGGAGGGACTCTGGAGGGGtacgagaagggggggagggg
gaagggggaggcgggaacGGAAGCGTCCAGACGGCCTTGTCTTCCGCGTG
AAGAGGCTTGCCGAAGGAGCCGCAGGAGAGACGGCACGCAAGGCGATGGG
ATAATGTAGGGAGCCGGCTTCTTATGGAGAAAATTCAGCTGTAAGTGGAC
AAGGGGTTGTTGTAAATTTTATTCGTATGTGAGATATTCAACTTCCTCGG
TCTGTACAAACCCGATTATTGATACGCGACAGAGGCATCCGGTCGGGGAG
ATGTCCTTCGCGGAGGAGTAGATTTAAAGATAAGGCAGCGACCAAAAAAG
CGccatgaaaaaaagaatgcTGTCATGCTATACATAGAATCGGCAAAGGA
GGTAGAACGCGAGCGTGCACGCGGCAATCGTCGGCACCGGGGGCGTgcca
agggagagaaaggaagcatgATGATTGTTCATTGTCAAGAACTTAAGTTT
TCCGTGCATTGCACCGCCAGGAGCATTAAGTCTTCGCACTCTGGTTACTT
GTCTGCCTCATTCCCGTCTTCAAGCCCTCACGCGCCTCTGCACCGCCTCG
AGCGTGTGGCCCTCAGGGACGATACCCACGTCATTCCCTGCCTTTGCTTC
TCCTGCATTCCACCTTTGCGCTAGACTGTAGCGGAGCCCTTGCTGTATCG
AGGCAGATCGCCGCAGGTCATatgcgggcgaggggggggacaacaGTGAA
AGCTTCGCTTATTCGTAGGCTTCCCATAAACTCTTACTCGCTCGTGATAC
CCATgacggccccgcccccg

Coding sequence (CDS) from alignment at KK037247.1:500575..504294+

>rna8071 ID=rna8071|Name=rna8071|organism=Nannochloropsis gaditana|type=CDS|length=2610bp|location=Sequence derived from alignment at KK037247.1:500575..504294+ (Nannochloropsis gaditana)
ATGCCGGCCTCTTCGTCGCGTCGGTCACCTTCTTTGACCACGAAGACGGT
AATTTTGGCCGCTTTGTTCCCTGTCGCGGCCTTAAGCTTCACTTTACCCT
TCCGACACCGCCTACGGGAGCCCAACGATGTCCATCACAGCTTTCGTGAA
AAAACTCATGCAATGCATCACGGTTCAAATCTTCTCGCCGGAGGGCCTTT
GCGAGCAACGGCCTCTGGGGACAGAGGATTCGAGGTTCTAGACGCTGTCC
CGGGACTGGCGGAACTCCAGCGTTCCGGCGCGATGACGGACGAGAAAGGA
GTATCGTCACCCTATACCGGCACCACATTCGAAGAGGATTTGTTCCTCAT
TGACAAGGGGACAGATTTGACTGCCTTGTTGGAACCGATGGCGACGAAAG
AGTTGTTCTTCGGGGACGGccagccctccttcgtccctttgACCGACTTG
TTCGACCAGGGCGTATCGGCCACGGAAGAGGCCGTCGCCAAGGTCAACGC
GGACATGAAGGAGGCCCGGGATTCTCGAGGCATCGCTCCTTTCATCCAAG
GCCTGCGCAAAGCTATCCTGGGCGGCAGCATGGCAGTGGGGAGTGGGGCC
CGTCGCTACGCCGGGAGGTTATGCATAGGCGCCACGCAGTACGTCTCCTC
GCACACCCGGCTCCTCTGCAACGTGGTTGCGCATCTTCTTGACCAAGCGC
GGGTCCAAGTGCTGAAGGCACGCCTCATGATGGTTTCGCACCTCGGCGAG
TTGCTCTCTCAAGTCGAAGCAGGCTTTCGTCCCAGGCCGACGCGCGTGGG
CGACCGATTCACGCGCCCCGGCGCCCGGGCCGAGCCGAGGGCCCTGTCCT
CGGAGAGTGAGCAGGTCGGCGTCCAAGCAGTGCTGGCAGTCCTGCGAGCT
CGGTGGGCGAAGGCTCGAGCGCTGGCCCGTGCGTACCACGGGGCCGTGCA
GGCTGCCGCGGGTGGCAAACTCCGAGGCGCGAGGAGAGCGGTCGAGGCCT
GGACCCAGCGCttggggcggcggggagagggggcggcaACGCAGTGGCCA
GGCCAGGTGCAGAAGGCGTTGCGTCGATCCCTCTTGAAAGGTGGGCGGTT
GGTCTCACACCTCAAGGCCCGGGGAGTGGAGCGATGGGTCCTCGGGGAAC
GTGGCGGGAAGGGCCTGATGGTGGAGAGGCaggcggacaaggacgtCGGC
CGTGGAGTGAGCGGCGTTGTTTCTGGTTTCAGCGAGCACGCGAtgaaggc
agaggaggcgctctcgctccctgtCTCGGCGCCCGCACTCCCGGTTCCCC
TGCCCGTGTTCCCTATGGCCCATGTcttgggagggagcgacgagTTAACc
ctgcggcggcgggaggagcagggggtgCTACTGCTAGTGCCCTCTTTTGA
CGATGAGCCTCGgatgaacgaggaggaggtggtggtgggagaggcggagg
aggaagtagacggcccggggggctgggagggcgtggaggcgggagatgtc
tcagagggcggggcggaggcgggggaagagagggtggaggacctggaagt
agtggaggtgggagacagggtggaggacgtgatggagagcggtgtggagg
agcaaggtgggagcgaggaggaggagggcgaggacggcgatgATGACCAC
TACGACGGGCTGGGGCTGACGACCACGACCAAGCCGCAAGccgagtcgga
ggaggaggactggcaggaggcaagggaggaagaggcggcggagggagggg
cctggCTGCTTCGGTTTGGGGGCCGGAGGGTGTCAGACGAGGAGCGCGCG
GTGATGGAGAAGCTGCAGGCCCGTCTGGTCATGCTCCCGGAGTCCTTGAC
GCATTGGGTCTCCCCGGGCGATTTGTTGCGGTACGTGCGCGCTTTCAagc
acgtggaggacgcgTGGGTGGCCCTCCGCAAGACCTGCGTCTttcggcgg
gagaggggtgtGGACGTGGCCCTGCGGCCTGATCTGGCGGAGAAATTCGC
GGGCTCGCCGCTGGCCGAGGAGATGTTCTGGATGGGCCTCGACCGCGAGG
GAgatcccgtcctcgtcttccgcacCGCCTTGCACCAACCCGGGCGCTTC
ACGACGGAGGAGTACTTGGCCTACCTCCTCTACCTGATCGAGAAGGGCCG
CGAGCTCTACGGCTTGGGTCAGCGCACCCAGATCTCCTTCCTTGTGGACC
GCAAGGGGGGCGGACTGGCCAACCAGGACCCcaaggtggtgctggcgctg
gTTCCTGTGCTGCAGGCGCACTATCCCGAGTGCTTGAAGAAGACTTTCAT
CGCGCCCGTCAACGTAATCTTCCAGTTCATCTGGAAGGTGTTCACGCTCG
TGCTGGCCAAGGATACAGCGAACAGGGTCCGGCTGCTTTCGGCGGGGGAC
CTCGCGCGAAACGGAGGGGGTCTGCGTGAGGTTTTTTACGACGGACAACT
GATGAAGCACTTGGGAGGGACTCTGGAGGGGtacgagaagggggggaggg
ggaagggggaggcgggaacGGAAGCGTCCAGACGGCCTTGTCTTCCGCGT
GAAGAGGCTTGCCGAAGGAGCCGCAGGAGAGACGGCACGCAAGGCGATGG
GATAATGTAG

Synonyms

Publications