rna8068, rna8068 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8068
Unique Name	rna8068
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2883
Alignment location	KK037247.1:495303..495723 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100023g59.3991.mrna
Orig protein id	gnl\|cribi\|Naga_100023g59.3991
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:495303..495723 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g59	gene7812	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8068	rna8068-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22675.1	cds8046	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:495303..495723+
coding sequence from alignment at KK037247.1:495303..495723+

mRNA sequence

>rna8068 ID=rna8068|Name=rna8068|organism=Nannochloropsis gaditana|type=mRNA|length=2883bp
TTCTGTAAAACAACCCTACAGGCGAAAGCTCTACGGAAAGTTTACCTTTG
GTCGTCGGTATGCCTGCTTCTGTGGCCGTCGGCGGAGATGGTCATGAACC
GCCAGGGGCGTCTGACCTCCGAGACTCGGCTGCCGCGGGCGCGGGTAAGG
ATTGCACTTTGGAATCTACAGTTTCACACCCTTCTACAAGTGAGAGCAGT
GACGCAGTCCTGGCAGAAAAGCAGGAAGGTGAGGAGCGTGCGATTCTTGA
GGAGACGCAGAAACAGTCGCAGCACCAGCCGTCGCTTCCGAAGCGGGTGA
GCGATCAGCCAGGAACCGAGAGCAGCAACAGCTGTGAAGAAAGTACAAAT
AGTCCTGACATGGACGTCCAAGACAGAAGAGAAGATAAAGGCTCGATAGA
GCGCAGTCGAGAGGAGACGCTCTCCCTCAAGAAGATGTTGGACCGCGCGA
AAGGCACCATCAAGCAGCTCAACGGCATGCTGGCCACGTACGAGCACGAG
AACGGGCGCCTGCAAGATTACATGGAGGCTCTGGGCAACAAGCACGCGAG
CGGAAGTATCAACCATTGTAGTACCGCGAGGAACCTCCGGCCTTTCGCTG
AAAATAGAAACCCTCCCTTCTACCCGATGCCCGCCGAGTCTTCTAAGACC
TTCTGCTTGCCCGGCAGCAACGGAGTGCCTGGCCTCATGCGTGGGCCCAT
TCCATCGCCTTTGTTCCCCATGTATGGGCCGGAAGCCCCAAGGTTCCCCC
TCATGAAGGGTGGCTCGGGCGTGTTCGGCGAGGGCCCGCGCTCGCCTCCA
GAAGACAACGGAAGCTCCTTCCTGTGGCGCACCCAGAGGCAGTCCTTGCC
GTGGCAGTATCAGCAACCCCACCAAATGCTCTCACAGCCGCAGCCACCAG
CGTCTTCTGCACTCTCTCCCAGCGCGGCCCTGGGCTTGTTGCAGTTCTCC
CAGCCTACCAGCCTGGACTCCCAGGGGAGCGGCCTCCCAGGGCCGGGAGC
CTCAGGGACCGGCCGTAAACGGGAACGAGCCGAGTCTCAAACCACGTCGC
CGGAGCCACCCAGCTCCAATCCTGAACCCCACCCGCCACAGGCGTCCTCG
AGCAGCGGCGAGGGGGCCGGGGAAGGGAGTGAAAAGGGAGGGAAGGCAGA
GACTCCGGGGCCGGGCGCGGGATCGTGGGGGGAGAGTCAGGAGGCAGGTA
CGGCTGTCACGTTGGTATCGGATGGCAAAACGGACGAGAAGAGATTTCGC
AAATCTTGCGACTTCTGTACTGCCACCAAAATACGCTGCGATGGGCGGAA
GCCGACCTGCGAGAATTGTGACAAGCGTCTGGTTGCCTGCCACTACTCGG
AGAAAAAGAGGCCGGGCCCCAAGCTTAGCAACGCTTTTAAGCGGGAGCGC
GGGAGGGTAAATACGCGTTGGGGTGTCCCCCTCGCCTCGCAAACTGAAGA
AACACACTTACAGCCGCCCTTGTTGAAAGAACCGCGAAAGGGAGCACAGG
CGGCGCAACCGCAAGACCAGCACAAGCAGCTTCCTGCCTACGATCAGCAC
CAGCTCCCGCAGCCTCCCTGTGAGCAACAGCAACAGCAAGAACAACAGCC
GCTGCACCCGCTTCACTTTTCCATGACGGCTCCTCTGGCCCGAGCACCCC
CTCCCCAAGCCGGGCCTCTCCCTCCATTCGCCACCTCCGCCATGTTCTCG
CACTTGACGGGCTCCTATCCGCCCCCCCCCCCTCCCTTCCTCCCCCCCCA
GTCACATGCCAGCCTCATTCAACGCCGGCGCACCCATGTACAGCATGTAC
TCGTCGTCCCAGCAACACCACTCGGCCTTCCCGCATTTCGCGCCGCACAT
GCAGAGCAGGATGCATCATGACCCCTCCATCAGCTTTCCTCAAGGCCCCC
CTCTCCATCCTTTGATGGGCTCCCCGTTGAGCACGGCCACTGACCTCTAC
GCCTCTTACGGTAACATGGGTATGGGCACCGGCAGCATGGCCAACGGGAG
CGGTGGCAACGCCGGCAACTCATTGCTGCCTTTCCCCTTCCTTCCACCGT
CTGCCTACACCGGTGAGAGCGGAGGTCTCCTTGTCCCTCCAAACATGTCT
GCACCAGCATTCTCTTCACTCACAACGACCAAAGGATCGCCGGTCGGGAT
GGAGAACATGATCGAAGAGGCACGCGGACTCGCAGGCCCGTTCCAAGCGC
CTTTGTCCCCCCTCTTCTCCTCCCGCATTCAGTCTCCTGCTGTTGGCGAC
GCACCCCGGGCAGACACTGAAGGAGGGCGCGGAGGGCGTAGTGAGCAGAC
GGGAGCCGTGTCCTCGCTCGTTGGGATGTCTATGCGATAAGGAAGCTGCA
CAGCGGCCCCAACAAGAGTGAGAACGATAGGGAGAAGGAGAAGATTTAGT
AGGAATGTCAGACGTCAATGGAATAGTTTTATAAGAGGGATTAGGCTATA
TCAAAATTTACACATACATTTTTCATAATAGCGAAGCAGGGAGGAAAGAG
TCTTGCTGATTCTAAGTGTTTCTACCTATAGATGTGATACCCTTTACACA
AATGTACACTGTAAGAGCGCGGGAAAAGAGTCGGCCGTGCGGAGAGGAGT
AACGCACAAGGACGCGCCTCTTTTCCTTTGACAGAAGAGAAGTTTAAACA
CAAAGACGTGGACCACAAGTGCTTGCGTATGAGCGATGTAAGGGTAAGTG
CAGATCGGAAAACCAGTGGCTGGACCATGGAAAGCTCATGGCAGGGAGAA
CCTGTACACCTAGAGGGCAACGAGGGATGGGGAAGGCGCCCTGGGCACAC
AAAGCACGAGAGACTCGTACATAGACTGCACAAAGCGTGTAATACCCCGA
CTCAAAAGTATCCATAGCAAGTCATCTAAAGAG

protein sequence of rna8068

>rna8068-protein ID=rna8068-protein|Name=rna8068|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MREKSPQFVFLHTSKILGSTLSEVYFICRLSLELIQDTSLIFHPVRPRSH
DHLRPAIRFAVCPACGRHQCELDNFSCQLDAPIDSPL

mRNA from alignment at KK037247.1:495303..495723+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8068 ID=rna8068|Name=rna8068|organism=Nannochloropsis gaditana|type=mRNA|length=421bp|location=Sequence derived from alignment at KK037247.1:495303..495723+ (Nannochloropsis gaditana)
ATGAGAGAGAAGAGCCCACAATTTGTATTTTTACACACCTCGAAAATACT
TGTTTCTTTCTTAATATTACTTGGAGTTTTTTTCAATTGCCATACTAGAC
AGTCTTGAACATTTGGAGTTTTTCTCGTCGCCCTGGATCCCTTTTCCGAG
TCCTGACGGAGTATAGGGCAGCACGCTAAGTGAGGTCTACTTCATCTGTA
GGCTCTCTCTCGAGCTCATTCAAGACACCTCTCTCATCTTTCACCCGGTC
CGCCCTCGTTCACATGACCATCTCCGCCCAGCAATGTCTGAAGCTCCCCT
AAGGATTCAATGACTGTGTGCACATAGCCGCTTCGCAGTGTGTCCAGCGT
GTGGTCGGCACCAATGTGAATTAGACAACTTTTCATGCCAGCTAGATGCG
CCCATTGACAGTCCTCTGTGA

Coding sequence (CDS) from alignment at KK037247.1:495303..495723+

>rna8068 ID=rna8068|Name=rna8068|organism=Nannochloropsis gaditana|type=CDS|length=792bp|location=Sequence derived from alignment at KK037247.1:495303..495723+ (Nannochloropsis gaditana)
ATGAGAGAGAAGAGCCCACAATTTGTATTTTTACACACCTCGAAAATACT
TGGCAGCACGCTAAGTGAGGTCTACTTCATCTGTAGGCTCTCTCTCGAGC
TCATTCAAGACACCTCTCTCATCTTTCACCCGGTCCGCCCTCGTTCACAT
GACCATCTCCGCCCAGCAATCCGCTTCGCAGTGTGTCCAGCGTGTGGTCG
GCACCAATGTGAATTAGACAACTTTTCATGCCAGCTAGATGCGCCCATTG
ACAGTCCTCTGTGAATGAGAGAGAAGAGCCCACAATTTGTATTTTTACAC
ACCTCGAAAATACTTGGCAGCACGCTAAGTGAGGTCTACTTCATCTGTAG
GCTCTCTCTCGAGCTCATTCAAGACACCTCTCTCATCTTTCACCCGGTCC
GCCCTCGTTCACATGACCATCTCCGCCCAGCAATCCGCTTCGCAGTGTGT
CCAGCGTGTGGTCGGCACCAATGTGAATTAGACAACTTTTCATGCCAGCT
AGATGCGCCCATTGACAGTCCTCTGTGAATGAGAGAGAAGAGCCCACAAT
TTGTATTTTTACACACCTCGAAAATACTTGGCAGCACGCTAAGTGAGGTC
TACTTCATCTGTAGGCTCTCTCTCGAGCTCATTCAAGACACCTCTCTCAT
CTTTCACCCGGTCCGCCCTCGTTCACATGACCATCTCCGCCCAGCAATCC
GCTTCGCAGTGTGTCCAGCGTGTGGTCGGCACCAATGTGAATTAGACAAC
TTTTCATGCCAGCTAGATGCGCCCATTGACAGTCCTCTGTGA

Synonyms

Publications