rna8055, rna8055 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8055
Unique Name	rna8055
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1426
Alignment location	KK037247.1:454046..455625 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100023g43.3986.mrna
Orig protein id	gnl\|cribi\|Naga_100023g43.3986
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:454046..455625 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g43	gene7799	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8055	rna8055-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22670.1	cds8033	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:454046..455625-
coding sequence from alignment at KK037247.1:454046..455625-

mRNA sequence

>rna8055 ID=rna8055|Name=rna8055|organism=Nannochloropsis gaditana|type=mRNA|length=1426bp
AAGCCATTGCCCTATACCCGACCTCCCTCCCTTTCTTGTTGACAGAGATG
AAAAATCCGCCCAGCCAGGCCGCCCAGGTGGCATTGCGCAGCGTCATTGC
CGTCGCTTTCGAGCGCTTTTCTCTTTTTGCGAGGACACAGACAAGGTCTC
GTGCATTCGAGAGACTTAGTTGTTTGTAATTTGTGGCAGATTCATGCAAA
GTATCCCCCTCATATTCTCTCTCACCTTTCCTCGTACAGCTTCATGACGT
CCCCTAAAGAAGAGACGTCTATGTTTTCAGATGAGAGTGGCTCACTTTTC
AGCAACCTCATGGGAATGATTTCTTCAGTCACCGGCGCTTCCGGTAGTGC
GGAGACTGCCAGCCCTTCCGGCAAGGCTGATACGCCTCCCGCAACTGCCC
CGCCAGAGAATATGGAACAAATCCCAGGCATGGGGCCTTACTTGGGATTC
TGTCGAAATGACAAGGCCAAGGCTTGGGCTTTATATTCCCACGGTCAGGC
CATCCGCAAGGAATTGGGGCTTGATACAATCTTGCATGAGCCGTATCCGC
ATTGGGATGTCCTGAAGGAGCACTATCAAAAAGCCATTCACGGCCGCTCT
AAAAATGGAGAAATTGTTTTGGTCGAGTGCATTGGACGCATGGACTTGGC
GTCTTTAAAGAAAGCGGGAATCACTCGCAAGGAGATCGTGCGGTACTACT
GCCTCTTCTTTGAGTTCATCTTGCAGCACATCGGCGACCAAGAATCCAAA
GTCCTGATGATCTACGACTTGGAGGGGCTCGGACTCTTTTCAGTGTTGAA
CGGGGACTTCCTAGGAACGGTGCGAATGCTTAGCGACTGCCTGGGGGCTC
TCTACCCGCGGGTGATCACGAAATACGTTTTGGTCAGGCCGCCCGCGCTC
TTCCAGAGCCTGTGGGGCCTCGTCAGCGGTGTTTTGCCGGCAGGCGCTCG
GAACGACTGCGTACTCTGCAAGTCAGCGCAAGATCTTGAGGTCCTGCTTG
CCCGAGAGAACATCCCCGCCGAGTACGGCGGGAGCAGCGACAGGCTGCTA
GGGGACGCGGAGGAAATGCGACGACTGAAGGCGCACCTGCAGTCGAAGCA
GGCAGGGCAGTGAGGTGACAAACTGGTGGGTGCAGGGTGAATCGGGAGTT
GAAATGGGATGACGTAAATGGCCAGGGGGCCGGATGAGTGGGTTTTGGGC
ACTGAATGTAAAGTCTGTGTAAACAGCTTGGGGCTCTGCCTCTTTTGGTG
GGAAGGATCTTCTCGCCAGTTTGTGTATTGTCTGACCGTACATATGAGAG
ATGTGGGTAGGGGGATATGAGTTTTATATTAGAAGGCGATAGGAACGGGC
GAGAGCGGTCGCAGGGCTCGCCTAATCTGAAAGGGCAGATTGAGGGGCCA
TGGCCTACGTGTGCCAGTGCAGGGCG

protein sequence of rna8055

>rna8055-protein ID=rna8055-protein|Name=rna8055|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MERGTHWQRRQRPLRNLCLFASLRRSRAMMETQHIPSGALETVRTAPKGR
LPDYQSPGQEQNGSQIHCRLRREGCHRYSESQEESNRPLFSHGDRGQGER
ADGRSPHPHLCPPPSSCPGTTSSSQLSTHTPLQPETQLPSAEITPTGMGD
NGLPSQLPIFSVTSEDDTNLCGSGNRLVEIRATPSHPPAQAQEEEEAGGG
GGGRASVGTWKASAFRVPTANLFPVHGELSAVRARQSEQLATLRARGQES
SYLYVMQEMALRVLEREELEYVVVKNEDRRRKGRVWWGRRKCKSADGPQE
LNRALKELQRGLLDPVGLGPNTRFLGLTSDVLAEISLFAQGYQGGPGGVK
SR

mRNA from alignment at KK037247.1:454046..455625-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8055 ID=rna8055|Name=rna8055|organism=Nannochloropsis gaditana|type=mRNA|length=1580bp|location=Sequence derived from alignment at KK037247.1:454046..455625- (Nannochloropsis gaditana)
GAAAGCTTTTCAGGAAATGATTGAGAGGGTTTCGGGTTCAGGATCTCTGT
CCCGCGGCTTTTCAACACCAATTTTACTAGATCTAGCAGGATAAGACTAA
AAGCAAGCAGAAACTCCTGTCTGAGCTCAGGTTTGCGGGGGACACCGGCA
AACTACGGAGTGTAATTAAAGCCCTCTGCTGGCTGAGGCTCGGAACGGAA
TGCGTTCTCGGCGCCCTGACTTTTCTTAATTAACACGTTTTAAACCCATT
TTAGTCTCTGTAAAGGGAAGCTATTCATCGAAAGAATCCCACAGAAGAAA
GAATGGAAAGAGGTACCCATTGGCAGCGGAGGCAGCGTCCCTTGCGTAAC
CTCTGCCTGTTTGCTTCACTTCGGCGGAGCCGGGCCATGATGGAAACACA
GCATATACCCAGTGGAGCCTTAGAAACTGTCCGCACAGCGCCAAAAGGAC
GGCTGCCAGACTACCAGTCACCGGGCCAGGAGCAAAATGGGTCGCAAATC
CACTGTCGTTTACGCAGAGAAGGATGCCACCGCTATTCGGAATCTCAAGA
GGTAACTACAAAAGGCAACACGTTTGACCAAAGTAGGCAATATCTCTACC
CTCATTATTTCCACGCAACCATTGCAATCGATCGCAGGAATCAAACCGCC
CCCTTTTCAGCCACGGAGATAGGGGACAAGGAGAAAGGGCGGATGGACGA
AGCCCCCATCCTCATCTTTGTCCCCCGCCTTCCTCTTGCCCGGGCACCAC
CTCCTCGTCCCAGCTCAGTACACATACCCCACTTCAGCCTGAGACCCAGC
TCCCGAGCGCTGAAATCACCCCTACTGGTATGGGTGACAACGGTTTGCCC
TCCCAATTGCCCATATTTAGCGTCACCTCAGAGGATGATACCAATCTCTG
CGGATCCGGGAACCGGCTTGTTGAAATCAGGGCCACTCCCAGCCATCCTC
CCGCCCAGGCACAAGAAGAGGAGGAGGCGGGAGGTGGAGGTGGAGGGCGT
GCCTCAGTAGGTACCTGGAAAGCTTCTGCCTTCCGTGTACCGACAGCTAA
CCTATTTCCCGTCCACGGCGAGCTGAGCGCAGTCCGAGCGCGGCAAAGCG
AGCAGCTCGCCACTCTGCGCGCTCGAGGACAAGAGAGTTCGTACCTATAC
GTGATGCAGGAGATGGCCCTGCGAGTGTTGGAGCGCGAGGAACTTGAGTA
CGTGGTGGTGAAAAATGAGGACAGGAGACGGAAGGGCCGAGTCTGGTGGG
GAAGGAGGAAGTGCAAGAGCGCGGACGGCCCACAAGAGCTCAACCGCGCG
CTGAAGGAGCTACAGCGAGGGCTCCTTGATCCGGTTGGATTGGGTCCAAA
TACTCGTTTCTTGGGACTCACCTCGGACGTGCTGGCTGAGATAAGTCTGT
TCGCACAGGGCTACCAAGGGGGGCCCGGGGGGGTGAAATCCCGGTAGGGG
CAGGGGAAACGCTCGGTTCGGACTAGGCTTGTCATTCGCCGGCGAGCCAG
AATGCGTACGAAAGCAACATAAAATAAAAGACAAAGACATGTACAAAACA
AAACGAGAAAAATCAAATGTCAAGTGGAGC

Coding sequence (CDS) from alignment at KK037247.1:454046..455625-

>rna8055 ID=rna8055|Name=rna8055|organism=Nannochloropsis gaditana|type=CDS|length=2118bp|location=Sequence derived from alignment at KK037247.1:454046..455625- (Nannochloropsis gaditana)
GAATCAAACCGCCCCCTTTTCAGCCACGGAGATAGGGGACAAGGAGAAAG
GGCGGATGGACGAAGCCCCCATCCTCATCTTTGTCCCCCGCCTTCCTCTT
GCCCGGGCACCACCTCCTCGTCCCAGCTCAGTACACATACCCCACTTCAG
CCTGAGACCCAGCTCCCGAGCGCTGAAATCACCCCTACTGGTATGGGTGA
CAACGGTTTGCCCTCCCAATTGCCCATATTTAGCGTCACCTCAGAGGATG
ATACCAATCTCTGCGGATCCGGGAACCGGCTTGTTGAAATCAGGGCCACT
CCCAGCCATCCTCCCGCCCAGGCACAAGAAGAGGAGGAGGCGGGAGGTGG
AGGTGGAGGGCGTGCCTCAGTAGGTACCTGGAAAGCTTCTGCCTTCCGTG
TACCGACAGCTAACCTATTTCCCGTCCACGGCGAGCTGAGCGCAGTCCGA
GCGCGGCAAAGCGAGCAGCTCGCCACTCTGCGCGCTCGAGGACAAGAGAG
TTCGTACCTATACGTGATGCAGGAGATGGCCCTGCGAGTGTTGGAGCGCG
AGGAACTTGAGTACGTGGTGGTGAAAAATGAGGACAGGAGACGGAAGGGC
CGAGTCTGGTGGGGAAGGAGGAAGTGCAAGAGCGCGGACGGCCCACAAGA
GCTCAACCGCGCGCTGAAGGAGCTACAGCGAGGGCTCCTTGATCCGGTTG
GATTGGGTCCAAATACTCGTTTCTTGGGACTCACCTCGGACGTGCTGGCT
GAGATAAGTCTGTTCGCACAGGGCTACCAAGGGGGGCCCGGGGGGGTGAA
ATCCCGGTAGATGGAAAGAGGTACCCATTGGCAGCGGAGGCAGCGTCCCT
TGCGTAACCTCTGCCTGTTTGCTTCACTTCGGCGGAGCCGGGCCATGATG
GAAACACAGCATATACCCAGTGGAGCCTTAGAAACTGTCCGCACAGCGCC
AAAAGGACGGCTGCCAGACTACCAGTCACCGGGCCAGGAGCAAAATGGGT
CGCAAATCCACTGTCGTTTACGCAGAGAAGGATGCCACCGCTATTCGGAA
TCTCAAGAGGAATCAAACCGCCCCCTTTTCAGCCACGGAGATAGGGGACA
AGGAGAAAGGGCGGATGGACGAAGCCCCCATCCTCATCTTTGTCCCCCGC
CTTCCTCTTGCCCGGGCACCACCTCCTCGTCCCAGCTCAGTACACATACC
CCACTTCAGCCTGAGACCCAGCTCCCGAGCGCTGAAATCACCCCTACTGG
TATGGGTGACAACGGTTTGCCCTCCCAATTGCCCATATTTAGCGTCACCT
CAGAGGATGATACCAATCTCTGCGGATCCGGGAACCGGCTTGTTGAAATC
AGGGCCACTCCCAGCCATCCTCCCGCCCAGGCACAAGAAGAGGAGGAGGC
GGGAGGTGGAGGTGGAGGGCGTGCCTCAGTAGGTACCTGGAAAGCTTCTG
CCTTCCGTGTACCGACAGCTAACCTATTTCCCGTCCACGGCGAGCTGAGC
GCAGTCCGAGCGCGGCAAAGCGAGCAGCTCGCCACTCTGCGCGCTCGAGG
ACAAGAGAGTTCGTACCTATACGTGATGCAGGAGATGGCCCTGCGAGTGT
TGGAGCGCGAGGAACTTGAGTACGTGGTGGTGAAAAATGAGGACAGGAGA
CGGAAGGGCCGAGTCTGGTGGGGAAGGAGGAAGTGCAAGAGCGCGGACGG
CCCACAAGAGCTCAACCGCGCGCTGAAGGAGCTACAGCGAGGGCTCCTTG
ATCCGGTTGGATTGGGTCCAAATACTCGTTTCTTGGGACTCACCTCGGAC
GTGCTGGCTGAGATAAGTCTGTTCGCACAGGGCTACCAAGGGGGGCCCGG
GGGGGTGAAATCCCGGTAGATGGAAAGAGGTACCCATTGGCAGCGGAGGC
AGCGTCCCTTGCGTAACCTCTGCCTGTTTGCTTCACTTCGGCGGAGCCGG
GCCATGATGGAAACACAGCATATACCCAGTGGAGCCTTAGAAACTGTCCG
CACAGCGCCAAAAGGACGGCTGCCAGACTACCAGTCACCGGGCCAGGAGC
AAAATGGGTCGCAAATCCACTGTCGTTTACGCAGAGAAGGATGCCACCGC
TATTCGGAATCTCAAGAG

Synonyms

Publications