rna8054, rna8054 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8054
Unique Name	rna8054
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2310
Alignment location	KK037247.1:452452..454044 +

Link to JBrowse

Properties


Property Name	Value
Product	phosphoinositol transporter
Orig transcript id	gnl\|cribi\|Naga_100023g42.3938.mrna
Orig protein id	gnl\|cribi\|Naga_100023g42.3938
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:452452..454044 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g42	gene7798	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8054	rna8054-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22622.1	cds8032	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:452452..454044+
coding sequence from alignment at KK037247.1:452452..454044+

mRNA sequence

>rna8054 ID=rna8054|Name=rna8054|organism=Nannochloropsis gaditana|type=mRNA|length=2310bp
ATGCAAGATACTGTCCCTGCGCATGCAAAAAGCACCAGTCGTGCCCCAAA
AGGGAAATACAAAAGCGTTCATAGCAAAGATGTAAAGAAATCTGATGAAA
AGATGCAACAAGGGCAGCAAAAGCGTTTACGTGCGGGCGGAAACGACAGT
AAGCTTCACGGGGACGGCGGCGGCCCAGCTAACAAAAAGCGGCATGTCAA
GTACGAGAGAGCTAAGACCAGACCTGCCTTCGATTTGGTGGCCCGCGCGA
AGGCTATTTGGGCGATATTTCGGTCCAAGCGTTTAGGCAAAGATGAGCGG
GAGAAGATGTCGGAGGAGTTATACTCGTTGATCAAAGGAAAACTGCATCA
GATCGCCGTCAAGCACGACGCAGCACGCGTTGTCCAGGCGGCCCTCAAGC
ATGGAAATCGCATCCAGCAAGAGGCGTATATCACAGAGCTCTTAGAGTAC
CTGCTGGAGTTCTCCAAGGTCCAGTACGCGCACTTTATCGTCCTCCGTCT
TTTGGACGTGACGGCCTCCCTCCCCGTGGAACGCAAGCGTGTCCTGCGGG
TGTTTACAGGCAAGGTCCACACCCTGGCAACCCATGCTGTCGGGGCCAAG
GTCCTGGAGGGAATATTCTCTATCTACCCGAAACAAGACACGCAAGCGCT
CCGTGCTGAGCTGTACGGGCGGGAGACGACGCTCCTTCTGGGCGACACGA
CGGGGCCCCAGGGCCGGGATCTGGCGGCGATCCTGCGCGAGCTTCCCGAG
CGCCGAGAGAGAGTGTTAAGCAATGTGCTAGCAATGATCCAGAAGATGCT
GGTGAAAGACCTGGCGGTCCTGCCCTTTGTGCAAGAGCTGATCTGGGAGT
ACACCTGCAACGCGGGTCCGGTCTTGGTGCGCGAGCTGGTGCCGACCCTC
CTAGACTACCTGCTGCTCCTGACGGGCACCAGGCCGGGCTGCAAGGCGCT
CGCGGAATGTGCGGCTTACGGGACGCCCAAGGACAGGAAGAAGATGTTAA
AGGCCCTGAAAGGGTACGTGGTGCCAACGCTTCTGCACAAAGACGCCTAT
TTGCTCATCCTGCGCCTGGCGGACGTGATTGACGATACCGTCGCTTTCAA
CAAGGCTGTGTGGCAGGAGCTATTGGAGAGGAACGCGGTGGAGGAGAGCA
TGCTTCGGTTGGCAACGCACGTGAAGGCCTCCAAGGTCCTCCTCTGCCTG
CTGGCCCCCGAGAAACGGAGCACCTTCTTGATGAAGGACGAGGTGGAGCT
GTTGCGGCCCGCCTTCATTCCGGCCACAGAGAAGAAGGAGGAGAAGGAGG
AGCAGGAGGGGCAGGAGGGCGGTGAAGAACTTGGGGAGGGAGGCGGGGCA
GGCGCAGGAGAAGAAGGTGGCGTTATCAGTCCCAGGCAGGGTTCCTCTCT
CCCTTCTTCCCCCTCCTTTATACCTACCTCGTCAGTCCCAGCCCCCAACC
TGGTCCCGACAAGCAAGAAAGATCCCGGCCTGCGACGTGAAGAGCTGCTC
GCTCCCTTGAAAGCCGCCCTCCTTGAACTTGGCAAGCAGCAGGCCCGGAC
CTTGCTGCTCTCGGCCGAAGGGAGCTTCATCTTGTACGAGGTGGCCACGC
GCTGGCGCGACCCCGCTTTGCTAAAAGCTATAGCTCACGCAGCAGCTTCA
GAAGGGTTTCAGGAGCAGCAGCTTAGGTCGAAGGAAGGGGAAGGGGATAA
GGAAGAGGAGGGCGATAGAGAGGCCGTGGACGAGGTGGAGGAGGGGGAGG
TAATGGATGAGGGAGGAGAAGACGACGAGGAGGAAAAAGCAGACGAAGTT
TGCGGCATGGGCAACAAGCAAGGGTCAGGTAGGCTGGAAGCGGCGGGAGA
GGACGAGCCTGCCGGGCCCACACGGGAGCATCGCATTGCCTACAAGACTA
TCAAGCGTCTCATCCTCTTTGAAGTCGGGCCCAAACCCGGGAAGAAGCCT
GAATGCCCTGCAACACCGCTGGAGAAGCTGCCTACACCTTTATTTAGCGA
GGCACTTTACGAAGAATGCACTGGGAGATGGATGGACTGGCTGGCTTCAA
TACGGGGGGGGTTCTTGGTGGAGGCCCTTGTGAAAGTGCCGGCAGTGGGC
GTGAGAGTGATGGATGAACTACACCCGAAAGAAAATGAGCTGAGACGGCT
CGCTTCCTCTTCCTTAAAAGGAGCGTCGGCGGTGCTTGCGATGATGGGGG
CCCAAAAGGTAGGGATGTCTCCCAAGAGGGGAGAAAAATCGAGGACGGCC
GAGGCGCAAAAGGTGGCCAAAACAGCGGTGTCGATTATCAGTGGCAAGCG
AACCAGATAA

protein sequence of rna8054

>rna8054-protein ID=rna8054-protein|Name=rna8054|organism=Nannochloropsis gaditana|type=polypeptide|length=289bp
MTSPKEETSMFSDESGSLFSNLMGMISSVTGASGSAETASPSGKADTPPA
TAPPENMEQIPGMGPYLGFCRNDKAKAWALYSHGQAIRKELGLDTILHEP
YPHWDVLKEHYQKAIHGRSKNGEIVLVECIGRMDLASLKKAGITRKEIVR
YYCLFFEFILQHIGDQESKVLMIYDLEGLGLFSVLNGDFLGTVRMLSDCL
GALYPRVITKYVLVRPPALFQSLWGLVSGVLPAGARNDCVLCKSAQDLEV
LLARENIPAEYGGSSDRLLGDAEEMRRLKAHLQSKQAGQ

mRNA from alignment at KK037247.1:452452..454044+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8054 ID=rna8054|Name=rna8054|organism=Nannochloropsis gaditana|type=mRNA|length=1593bp|location=Sequence derived from alignment at KK037247.1:452452..454044+ (Nannochloropsis gaditana)
AAGCCATTGCCCTAtacccgacctccctccctttcttgttGACAGAGATG
AAAAATCCGCCCAGCCAGGCCGCCCAGGTGGCATTGCGCAGCGTCATTGC
CGTCGCTTTCGAGcgcttttctctttttgcgAGGACACAGACAAGGTCTC
GTGCATTCGAGAGACTTAGTTGTTTGTAATTTGTGGCAGATTCATGCAAA
GTATCCCCCTCATATTCTCTCTCACCTTTCCTCGTACAGCTTCATGACGT
CCCCTAAAGAAGAGACGTCTATGTTTTCAGATGAGAGTGGCTCACTTTTC
AGCAACCTCATGGGAATGATTTCTTCAGTCACCGGCGCTTCCGGTAGTGC
GGAGACTGCCAGCCCTTCCGGCAAGGCTGATACGCCTCCCGCAACTGCCC
CGCCAGAGAATATGGAACAAATCCCAGGCATGGGGCCTTACTTGGGATTC
TGTCGAAATGACAAGGCCAAGGCTTGGGCTTTATATTCCCACGGTCAGGC
CATCCGCAAGGAATTGGGGCTTGATACAATCTTGCATGTAAGGCGGCATA
TACAACCCGTCTGTAGCCTCAGTTAATGCGGATGATTGATGATTTTATTT
GGTACAAAGAGTTGAGTGCACGCTCCACAAACATAGGAATCGTAACTTGA
CTATTTCGACCAGCCTGTCTCACGTGTCGTTCTCTGCTTTTTTATCTTCA
ATAGGAGCCGTATCCGCATTGGGATGTCCTGAAGGAGCACTATCAAAAAG
CCATTCACGGCCGCTCTAAAAATGGAGAAATTGTTTTGGTCGAGTGCATT
GGACGCATGGACTTGGCGTCTTTAAAGAAAGCGGGAATCACTCGCAAGGA
GATCGTGCGGTACTACTGCCTCTTCTTTGAGTTCATCTTGCAGCACATCG
GCGACCAAGAATCCAAAGTCCTGATGATCTACGACTTGGAGGGGCTCGGA
CTCTTTTCAGTGTTGAACGGGGACTTCCTAGGAACGGTGCGAATGCTTAG
CGACTGCCTGGGGGCTCTCTACCCGCGGGTGATCACGAAATACGTTTTGG
TCAGGCCGCCCGCGCTCTTCCAGAGCCTGTGGGGCCTCGTCAGCGGTGTT
TTGCCGGCAGGCGCTCGGAACGACTGCGTACTCTGCAAGTCAGCGCAAGA
TCTTGAGGTCCTGCTTGCCCGAGAGAACATCCCCGCCGAGTACGGCGGGA
GCAGCGACAGGCTGCTaggggacgcggaggaaaTGCGACGACTGAAGGCG
CACCTGCAGTCGAAGCAGGCAGGGCAGTGAGGTGACAAACTGGTGGGTGC
AGGGTGAATCGGGAGTTGAAATGGGATGACGTAAATGGCCAGGGGGCCGG
ATGAGTGGGTTTTGGGCACTGAATGTAAAGTCTGTGTAAACAGCTTGGGG
CTCTGCCTCTTTTGGTGGGAAGGATCTTCTCGCCAGTTTGTGTATTGTCT
GACCGTACATATGAGAGATGTGGGTAGGGGGATATGAGTTTTATATTAGA
AGGCGATAGGAACGGGCGAGAGCGGTCGCAGGGCTCGCCTAATCTGAAAG
GGCAGATTGAGGGGCCATGGCCTACGTGTGCCAGTGCAGGGCG

Coding sequence (CDS) from alignment at KK037247.1:452452..454044+

>rna8054 ID=rna8054|Name=rna8054|organism=Nannochloropsis gaditana|type=CDS|length=1740bp|location=Sequence derived from alignment at KK037247.1:452452..454044+ (Nannochloropsis gaditana)
ATGACGTCCCCTAAAGAAGAGACGTCTATGTTTTCAGATGAGAGTGGCTC
ACTTTTCAGCAACCTCATGGGAATGATTTCTTCAGTCACCGGCGCTTCCG
GTAGTGCGGAGACTGCCAGCCCTTCCGGCAAGGCTGATACGCCTCCCGCA
ACTGCCCCGCCAGAGAATATGGAACAAATCCCAGGCATGGGGCCTTACTT
GGGATTCTGTCGAAATGACAAGGCCAAGGCTTGGGCTTTATATTCCCACG
GTCAGGCCATCCGCAAGGAATTGGGGCTTGATACAATCTTGCATGAGCCG
TATCCGCATTGGGATGTCCTGAAGGAGCACTATCAAAAAGCCATTCACGG
CCGCTCTAAAAATGGAGAAATTGTTTTGGTCGAGTGCATTGGACGCATGG
ACTTGGCGTCTTTAAAGAAAGCGGGAATCACTCGCAAGGAGATCGTGCGG
TACTACTGCCTCTTCTTTGAGTTCATCTTGCAGCACATCGGCGACCAAGA
ATCCAAAGTCCTGATGATCTACGACTTGGAGGGGCTCGGACTCTTTTCAG
TGTTGAACGGGGACTTCCTAGGAACGGTGCGAATGCTTAGCGACTGCCTG
GGGGCTCTCTACCCGCGGGTGATCACGAAATACGTTTTGGTCAGGCCGCC
CGCGCTCTTCCAGAGCCTGTGGGGCCTCGTCAGCGGTGTTTTGCCGGCAG
GCGCTCGGAACGACTGCGTACTCTGCAAGTCAGCGCAAGATCTTGAGGTC
CTGCTTGCCCGAGAGAACATCCCCGCCGAGTACGGCGGGAGCAGCGACAG
GCTGCTaggggacgcggaggaaaTGCGACGACTGAAGGCGCACCTGCAGT
CGAAGCAGGCAGGGCAGTGAATGACGTCCCCTAAAGAAGAGACGTCTATG
TTTTCAGATGAGAGTGGCTCACTTTTCAGCAACCTCATGGGAATGATTTC
TTCAGTCACCGGCGCTTCCGGTAGTGCGGAGACTGCCAGCCCTTCCGGCA
AGGCTGATACGCCTCCCGCAACTGCCCCGCCAGAGAATATGGAACAAATC
CCAGGCATGGGGCCTTACTTGGGATTCTGTCGAAATGACAAGGCCAAGGC
TTGGGCTTTATATTCCCACGGTCAGGCCATCCGCAAGGAATTGGGGCTTG
ATACAATCTTGCATGAGCCGTATCCGCATTGGGATGTCCTGAAGGAGCAC
TATCAAAAAGCCATTCACGGCCGCTCTAAAAATGGAGAAATTGTTTTGGT
CGAGTGCATTGGACGCATGGACTTGGCGTCTTTAAAGAAAGCGGGAATCA
CTCGCAAGGAGATCGTGCGGTACTACTGCCTCTTCTTTGAGTTCATCTTG
CAGCACATCGGCGACCAAGAATCCAAAGTCCTGATGATCTACGACTTGGA
GGGGCTCGGACTCTTTTCAGTGTTGAACGGGGACTTCCTAGGAACGGTGC
GAATGCTTAGCGACTGCCTGGGGGCTCTCTACCCGCGGGTGATCACGAAA
TACGTTTTGGTCAGGCCGCCCGCGCTCTTCCAGAGCCTGTGGGGCCTCGT
CAGCGGTGTTTTGCCGGCAGGCGCTCGGAACGACTGCGTACTCTGCAAGT
CAGCGCAAGATCTTGAGGTCCTGCTTGCCCGAGAGAACATCCCCGCCGAG
TACGGCGGGAGCAGCGACAGGCTGCTaggggacgcggaggaaaTGCGACG
ACTGAAGGCGCACCTGCAGTCGAAGCAGGCAGGGCAGTGA

Synonyms

Publications