rna8053, rna8053 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8053
Unique Name	rna8053
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1179
Alignment location	KK037247.1:449938..452247 -

Link to JBrowse

Properties


Property Name	Value
Product	peptidase
Orig transcript id	gnl\|cribi\|Naga_100023g41.3954.mrna
Orig protein id	gnl\|cribi\|Naga_100023g41.3954
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:449938..452247 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g41	gene7797	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22638.1	cds8031	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8053	rna8053-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:449938..452247-
coding sequence from alignment at KK037247.1:449938..452247-

mRNA sequence

>rna8053 ID=rna8053|Name=rna8053|organism=Nannochloropsis gaditana|type=mRNA|length=1179bp
ATGCCTTTCAGGGTCAGCATTCAAGTCCTATGTCTGTGCCTCGTGTTTAC
AACGCGATCAACCATACCTGCCTGCGCCTTCCAAGCTGCAAGTCTATGGC
GAACAAGACACGCACCGCTGTGCTCCGTCACCCTCGGCCCCACCGGCGCG
GGATCCCAAGAGCAACACGATGAAGGCAACGGAGCTCTCGTGACGGTGGT
GGTGGAACGCGTGGCTTCCCACACCGTGATGCCAAGCGCTCTCGCCGCAC
ACGGGAAATTGTTGAAAAACACAAACTTTCAGCCTGTAAAATTCATTCCT
CCCTCGGAGGAGGTCTCTTTCCACGTTGTGGTAGGTCGAAGTCCCGAGCG
AGAGCCTGTGCTCGCCTTCGTGGGCCCTGACATCGCGGCCGGAAAGCCAG
GAAGCAGAATCCAGGTGCCCACCGGGGTGGTTTTGCCTCGGCCAGAATCT
CTGAGCCTCGAGGAGTGTATCCTCTTGCCGTACCACGCCGTCTCCCTCCT
CCCACCACTCATGCGGGCAGGCATTCACGGCGGCGAAGGATCATCCGGCC
CCGCCTCCTCCAAGGTTTGCATCGTCACGGGCTGCGGGCCTGCGGCCATC
TTCGCCATCCAGGTGCTGCGCGCATGGGGCTGCCGCGTGGTGGGTGTCTC
TCGCCGGAACCTGGATGCCCTGCTCAAGGCGGGCGCGGAGGAGGCGATCG
ATTGCCGCACCACCAGCTTCTCCGAGCGGGTCCCCGAGTACGCCGCTGTC
GTGGACACGGTCGGCACGGACACGGAGGGCCTGGCCGCGAACCTGCTCAG
GTACAAGAAGGCTGCCTACGTCTCCACCATGCCCTCCGCCACGCGGCGCA
TGCAGGCCCAGGGCCTCCTCCAGGCCGCCTCCACCTTCGCCTCGGTCTTC
TGGGGAAAGCCGGACCTGGCCCTCACCGACGCGCACTGGCTCCCGGAGAA
ACTGGGGATGGACGTGATCTCCTACGTGCTCAGACTAGCCGAAGCGAAGC
ACGTGGTGCTGCCCTTGGCGCCCCCGTCCCTGGATGACTACATGGACGGG
GTGGTATGGGCCAAGGACTCGGAGACGCAAGCTCGCTTCGGGTTTCCAGC
ACCTTTACCTGAGGAGGGACTGACGGAGGCATTTTTGTCGCGGTTCCAGA
AGCGCATGGAGGGGGAAAAGGAGCAATAG

protein sequence of rna8053

>rna8053-protein ID=rna8053-protein|Name=rna8053|organism=Nannochloropsis gaditana|type=polypeptide|length=769bp
MQDTVPAHAKSTSRAPKGKYKSVHSKDVKKSDEKMQQGQQKRLRAGGNDS
KLHGDGGGPANKKRHVKYERAKTRPAFDLVARAKAIWAIFRSKRLGKDER
EKMSEELYSLIKGKLHQIAVKHDAARVVQAALKHGNRIQQEAYITELLEY
LLEFSKVQYAHFIVLRLLDVTASLPVERKRVLRVFTGKVHTLATHAVGAK
VLEGIFSIYPKQDTQALRAELYGRETTLLLGDTTGPQGRDLAAILRELPE
RRERVLSNVLAMIQKMLVKDLAVLPFVQELIWEYTCNAGPVLVRELVPTL
LDYLLLLTGTRPGCKALAECAAYGTPKDRKKMLKALKGYVVPTLLHKDAY
LLILRLADVIDDTVAFNKAVWQELLERNAVEESMLRLATHVKASKVLLCL
LAPEKRSTFLMKDEVELLRPAFIPATEKKEEKEEQEGQEGGEELGEGGGA
GAGEEGGVISPRQGSSLPSSPSFIPTSSVPAPNLVPTSKKDPGLRREELL
APLKAALLELGKQQARTLLLSAEGSFILYEVATRWRDPALLKAIAHAAAS
EGFQEQQLRSKEGEGDKEEEGDREAVDEVEEGEVMDEGGEDDEEEKADEV
CGMGNKQGSGRLEAAGEDEPAGPTREHRIAYKTIKRLILFEVGPKPGKKP
ECPATPLEKLPTPLFSEALYEECTGRWMDWLASIRGGFLVEALVKVPAVG
VRVMDELHPKENELRRLASSSLKGASAVLAMMGAQKVGMSPKRGEKSRTA
EAQKVAKTAVSIISGKRTR

mRNA from alignment at KK037247.1:449938..452247-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8053 ID=rna8053|Name=rna8053|organism=Nannochloropsis gaditana|type=mRNA|length=2310bp|location=Sequence derived from alignment at KK037247.1:449938..452247- (Nannochloropsis gaditana)
ATGCAAGATACTGTCCCTGCGCATGCAAAAAGCACCAGTCGTGCCCCAAA
AGGGAAATACAAAAGCGTTCATAGCAAAGATGTAAAGAAATCTGATGAAA
AGATGCAACAAGGGCAGCAAAAGCGTTTACGTGCGGGCGGAAACGACAGT
AAGCTTCACGGGGACGGCGGCGGCCCAGCTAACAAAAAGCGGCATGTCAA
GTACGAGAGAGCTAAGACCAGACCTGCCTTCGATTTGGTGGCCCGCGCGA
AGGCTATTTGGGCGATATTTCGGTCCAAGCGTTTAGGCAAAGATGAGCGG
GAGAAGATGTCGGAGGAGTTATACTCGTTGATCAAAGGAAAACTGCATCA
GATCGCCGTCAAGCACGACGCAGCACGCGTTGTCCAGGCGGCCCTCAAGC
ATGGAAATCGCATCCAGCAAGAGGCGTATATCACAGAGCTCTTAGAGTAC
CTGCTGGAGTTCTCCAAGGTCCAGTACGCGCACTTTATCGTCCTCCGTCT
TTTGGACGTGACGGCCTCCCTCCCCGTGGAACGCAAGCGTGTCCTGCGGG
TGTTTACAGGCAAGGTCCACACCCTGGCAACCCATGCTGTCGGGGCCAAG
GTCCTGGAGGGAATATTCTCTATCTACCCGAAACAAGACACGCAAGCGCT
CCGTGCTGAGCTGTACGGGCGGGAGACGACGCTCCTTCTGGGCGACACGA
CGGGGCCCCAGGGCCGGGATCTGGCGGCGATCCTGCGCGAGCTTCCCGAG
CGCCGAGAGAGAGTGTTAAGCAATGTGCTAGCAATGATCCAGAAGATGCT
GGTGAAAGACCTGGCGGTCCTGCCCTTTGTGCAAGAGCTGATCTGGGAGT
ACACCTGCAACGCGGGTCCGGTCTTGGTGCGCGAGCTGGTGCCGACCCTC
CTAGACTACCTGCTGCTCCTGACGGGCACCAGGCCGGGCTGCAAGGCGCT
CGCGGAATGTGCGGCTTACGGGACGCCCAAGGACAGGAAGAAGATGTTAA
AGGCCCTGAAAGGGTACGTGGTGCCAACGCTTCTGCACAAAGACGCCTAT
TTGCTCATCCTGCGCCTGGCGGACGTGATTGACGATACCGTCGCTTTCAA
CAAGGCTGTGTGGCAGGAGCTATTGGAGAGGAACGCGGTGGAGGAGAGCA
TGCTTCGGTTGGCAACGCACGTGAAGGCCTCCAAGGTCCTCCTCTGCCTG
CTGGCCCCCGAGAAACGGAGCACCTTCTTGATGAAGGACGAGGTGGAGCT
GTTGCGGCCCGCCTTCATTCCGGCCACAGAGAAGAAGGAGGAGAAGGAGG
AGCAGGAGGGGCAGGAGGGCGGTGAAGAACTTGGGGAGGGAGGCGGGGCA
GGCGCAGGAGAAGAAGGTGGCGTTATCAGTCCCAGGCAGGGTTCCTCTCT
CCCTTCTTCCCCCTCCTTTATACCTACCTCGTCAGTCCCAGCCCCCAACC
TGGTCCCGACAAGCAAGAAAGATCCCGGCCTGCGACGTGAAGAGCTGCTC
GCTCCCTTGAAAGCCGCCCTCCTTGAACTTGGCAAGCAGCAGGCCCGGAC
CTTGCTGCTCTCGGCCGAAGGGAGCTTCATCTTGTACGAGGTGGCCACGC
GCTGGCGCGACCCCGCTTTGCTAAAAGCTATAGCTCACGCAGCAGCTTCA
GAAGGGTTTCAGGAGCAGCAGCTTAGGTCGAAGGAAGGGGAAGGGGATAA
GGAAGAGGAGGGCGATAGAGAGGCCGTGGACGAGGTGGAGGAGGGGGAGG
TAATGGATGAGGGAGGAGAAGACGACGAGGAGGAAAAAGCAGACGAAGTT
TGCGGCATGGGCAACAAGCAAGGGTCAGGTAGGCTGGAAGCGGCGGGAGA
GGACGAGCCTGCCGGGCCCACACGGGAGCATCGCATTGCCTACAAGACTA
TCAAGCGTCTCATCCTCTTTGAAGTCGGGCCCAAACCCGGGAAGAAGCCT
GAATGCCCTGCAACACCGCTGGAGAAGCTGCCTACACCTTTATTTAGCGA
GGCACTTTACGAAGAATGCACTGGGAGATGGATGGACTGGCTGGCTTCAA
TACGGGGGGGGTTCTTGGTGGAGGCCCTTGTGAAAGTGCCGGCAGTGGGC
GTGAGAGTGATGGATGAACTACACCCGAAAGAAAATGAGCTGAGACGGCT
CGCTTCCTCTTCCTTAAAAGGAGCGTCGGCGGTGCTTGCGATGATGGGGG
CCCAAAAGGTAGGGATGTCTCCCAAGAGGGGAGAAAAATCGAGGACGGCC
GAGGCGCAAAAGGTGGCCAAAACAGCGGTGTCGATTATCAGTGGCAAGCG
AACCAGATAA

Coding sequence (CDS) from alignment at KK037247.1:449938..452247-

>rna8053 ID=rna8053|Name=rna8053|organism=Nannochloropsis gaditana|type=CDS|length=2310bp|location=Sequence derived from alignment at KK037247.1:449938..452247- (Nannochloropsis gaditana)
ATGCAAGATACTGTCCCTGCGCATGCAAAAAGCACCAGTCGTGCCCCAAA
AGGGAAATACAAAAGCGTTCATAGCAAAGATGTAAAGAAATCTGATGAAA
AGATGCAACAAGGGCAGCAAAAGCGTTTACGTGCGGGCGGAAACGACAGT
AAGCTTCACGGGGACGGCGGCGGCCCAGCTAACAAAAAGCGGCATGTCAA
GTACGAGAGAGCTAAGACCAGACCTGCCTTCGATTTGGTGGCCCGCGCGA
AGGCTATTTGGGCGATATTTCGGTCCAAGCGTTTAGGCAAAGATGAGCGG
GAGAAGATGTCGGAGGAGTTATACTCGTTGATCAAAGGAAAACTGCATCA
GATCGCCGTCAAGCACGACGCAGCACGCGTTGTCCAGGCGGCCCTCAAGC
ATGGAAATCGCATCCAGCAAGAGGCGTATATCACAGAGCTCTTAGAGTAC
CTGCTGGAGTTCTCCAAGGTCCAGTACGCGCACTTTATCGTCCTCCGTCT
TTTGGACGTGACGGCCTCCCTCCCCGTGGAACGCAAGCGTGTCCTGCGGG
TGTTTACAGGCAAGGTCCACACCCTGGCAACCCATGCTGTCGGGGCCAAG
GTCCTGGAGGGAATATTCTCTATCTACCCGAAACAAGACACGCAAGCGCT
CCGTGCTGAGCTGTACGGGCGGGAGACGACGCTCCTTCTGGGCGACACGA
CGGGGCCCCAGGGCCGGGATCTGGCGGCGATCCTGCGCGAGCTTCCCGAG
CGCCGAGAGAGAGTGTTAAGCAATGTGCTAGCAATGATCCAGAAGATGCT
GGTGAAAGACCTGGCGGTCCTGCCCTTTGTGCAAGAGCTGATCTGGGAGT
ACACCTGCAACGCGGGTCCGGTCTTGGTGCGCGAGCTGGTGCCGACCCTC
CTAGACTACCTGCTGCTCCTGACGGGCACCAGGCCGGGCTGCAAGGCGCT
CGCGGAATGTGCGGCTTACGGGACGCCCAAGGACAGGAAGAAGATGTTAA
AGGCCCTGAAAGGGTACGTGGTGCCAACGCTTCTGCACAAAGACGCCTAT
TTGCTCATCCTGCGCCTGGCGGACGTGATTGACGATACCGTCGCTTTCAA
CAAGGCTGTGTGGCAGGAGCTATTGGAGAGGAACGCGGTGGAGGAGAGCA
TGCTTCGGTTGGCAACGCACGTGAAGGCCTCCAAGGTCCTCCTCTGCCTG
CTGGCCCCCGAGAAACGGAGCACCTTCTTGATGAAGGACGAGGTGGAGCT
GTTGCGGCCCGCCTTCATTCCGGCCACAGAGAAGAAGGAGGAGAAGGAGG
AGCAGGAGGGGCAGGAGGGCGGTGAAGAACTTGGGGAGGGAGGCGGGGCA
GGCGCAGGAGAAGAAGGTGGCGTTATCAGTCCCAGGCAGGGTTCCTCTCT
CCCTTCTTCCCCCTCCTTTATACCTACCTCGTCAGTCCCAGCCCCCAACC
TGGTCCCGACAAGCAAGAAAGATCCCGGCCTGCGACGTGAAGAGCTGCTC
GCTCCCTTGAAAGCCGCCCTCCTTGAACTTGGCAAGCAGCAGGCCCGGAC
CTTGCTGCTCTCGGCCGAAGGGAGCTTCATCTTGTACGAGGTGGCCACGC
GCTGGCGCGACCCCGCTTTGCTAAAAGCTATAGCTCACGCAGCAGCTTCA
GAAGGGTTTCAGGAGCAGCAGCTTAGGTCGAAGGAAGGGGAAGGGGATAA
GGAAGAGGAGGGCGATAGAGAGGCCGTGGACGAGGTGGAGGAGGGGGAGG
TAATGGATGAGGGAGGAGAAGACGACGAGGAGGAAAAAGCAGACGAAGTT
TGCGGCATGGGCAACAAGCAAGGGTCAGGTAGGCTGGAAGCGGCGGGAGA
GGACGAGCCTGCCGGGCCCACACGGGAGCATCGCATTGCCTACAAGACTA
TCAAGCGTCTCATCCTCTTTGAAGTCGGGCCCAAACCCGGGAAGAAGCCT
GAATGCCCTGCAACACCGCTGGAGAAGCTGCCTACACCTTTATTTAGCGA
GGCACTTTACGAAGAATGCACTGGGAGATGGATGGACTGGCTGGCTTCAA
TACGGGGGGGGTTCTTGGTGGAGGCCCTTGTGAAAGTGCCGGCAGTGGGC
GTGAGAGTGATGGATGAACTACACCCGAAAGAAAATGAGCTGAGACGGCT
CGCTTCCTCTTCCTTAAAAGGAGCGTCGGCGGTGCTTGCGATGATGGGGG
CCCAAAAGGTAGGGATGTCTCCCAAGAGGGGAGAAAAATCGAGGACGGCC
GAGGCGCAAAAGGTGGCCAAAACAGCGGTGTCGATTATCAGTGGCAAGCG
AACCAGATAA

Synonyms

Publications