rna8049, rna8049 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8049
Unique Name	rna8049
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3493
Alignment location	KK037247.1:435723..437873 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100023g37.3955.mrna
Orig protein id	gnl\|cribi\|Naga_100023g37.3955
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:435723..437873 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g37	gene7793	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8049	rna8049-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22639.1	cds8027	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:435723..437873+
coding sequence from alignment at KK037247.1:435723..437873+

mRNA sequence

>rna8049 ID=rna8049|Name=rna8049|organism=Nannochloropsis gaditana|type=mRNA|length=3493bp
TGCTGGTGGGGGACTGACAACCCTGCGTGCGCTCCGGCGCCATGGAGATC
GGCCCTCTCGGCTGTGTCAACCCGAGGGCGCCCGTGCTCCAACGCTTTTC
ACGCTTCAAGTACAACGTACAAGACCAATGTGTCTGCTCCCCCAGGCGTA
TACTCACATATCAATATTGAAGATCAATTTAAAACATCGAGAGAGCTACA
TTTATCCGCCCACGTGCCCCGATTGGAAGGTCACGTAACCAAAGCAGCCA
GAGACCGCCATACCGCCAAGTACCGACGTCAACATCAAATCCTCCCCCTT
TTTTCCCTTCGCAAATCAGACGCAGACGATGTACCATGCGCTGGAAAAGC
GGGCGCGTTGCGATAGTTTTTGCTCTTAACCACAGCAAAGGGACCATTGC
TTTCAATATCCCACGGCGACCCATGGCGTCGTTCTTCGTGTGTGAGGCAC
CCCGTGCTGGCTGCATCGGCCGTCACATTTCCATTCCCTCTCGCGCGGCA
CGCAAACCTCCAGCTTGCCTCAGTGTTCGCAAGGACGCAGGTGCCGAGGA
ACAAGCAGGCGAAAGTCAGCCACACAAGCCTACACCTGAGACAGGATTGT
CGAGCTCCTCAGAGCTGCATACGCGTCTTACCACCGCCAAAGCTATGGCA
ACTGTCCGAGTTGACGCCTTCCATGTCGCGTCCCCGCCTTGCTCTCCTCG
AGGAACCTTTGCAGGTGGCCCCCTTGCGAGGTCGAGTCACCTGAGCGACT
TGGTGGAGGAGGCCTCGGGGGGGGGGGGTTGGCTGCTGCCGGCATAGGGA
GCAAGGAGCCAGTTTCTGTCTTGGAAAAAGACGAGGACACCTTGGCCGAT
GTGGAGCGTGCAGCCAAGGTCTATTGCCAGGGCGAACTCCTGCACTTGGT
CCAGACGGCCGGCATCTTCGAGGACTCCAAGGAGTTCGTGGATATGCCCA
TGCGCGTCGACCCCGAGGTGGTCCTAGCGCGCTTCCAAGCTCTCCTTCCC
GCCCTCCGCCGCGATACCAAGGTCCTTCGCGCATTTCTTACCCAATATTT
CACTGCGCCCGGTTCTGACCTGGTGGAGCACGTGCCGCCAGACCACTCGG
AATCACCGGCTCTTCTGCTTTCCCTCGCCGATCACGCCCCCTACCAACGG
TGGGCGGCCGAGCTCAATCACTTTTGGAAGCAGCTTTGTCGCAAGGTCTC
CGATGACGTCTTCCTGAACCCGCAGCGGTACTCGATCCTGCGGCGCACGC
ACCCAGTGGTAATCCCTGGCGGGCGTTTCCGGGAAAGCTACTACTGGGAC
TCGTACTGGATCGTCTTGGGGCTCTTGGCCTGCGATATGAAGGACACTGC
CCGGGGCCTGGTGCAGAACTTGTTGGACGACGTGGCCAACTTTGGCTTCG
TGCCCAATGGCGGCCGTATCTACTACCTGAACCGCTCCCAGCCCCCTTTG
CTCTCGGAGATGGTGCTGGCCCTCGTGGAACACGACCCGAGTGGCATTGA
CGAGGCCTTCGTTTCCGAAGCCCTGGCCGTTCTGGAAGGTGAATACCGTT
TTTGGATGCAGGATGGGGAGCGCGCAATAACCGTCAGCCCTCCTCCTCCA
ATACGGGCCTCCACCCAGTCTCAGACGTGGACCTCGTCCTCGCCGAGCAC
TTCCCAGCAGGCAGAACCGCCCGCGCAGCAACACGTCCTCAATCGGTACT
GGACGGCCTCCATCCATCCGCGGCCCGAGTCCTTCAAGGAGGACCTGCAC
CACGCTGGGCTCGCAGACTGTGCCCAGGGCTTCTACGCCAACATTGCGGC
TGGGGCGGAGTCAGGATGGGACTTTTCCTCTAGGTGGATCTCCCCGTGCG
ATAAGGGAGAGTACGCGCTGGAACGCATCACCACCACTGACATCATTCCT
GTGGACCTCAACACATTCCTCTACCGCATGGAGCGCAACATGGCGCGCCT
GCACGACTACCTCCTGGCCCGTCAAATGGGCCCGGGCTGTGGGACTCCAG
AAGCCAAAGCTGAGCCGCCCAGAGAAACAAGCTGTAAGGTTCCACCAGAC
TCTCGGGAATCGTGGGTGTCACCGAAAGCTCAAAAATTTGCCGAAGCCTC
TGCCAAACGAGCCCTGGCTATAGATCAGCTCATGTGGGATCAAGAGACGG
GGATGTGGCGCGATTTGTGGATGCCTGCATCCGGCAGAGGGGCCAGCAAT
CTTTTCACGGCGGCTCACTTTGCTTTCGGTAAGGTTCGGCCAGCTAGCAA
CTTCCTACCCCTGTGGGGACGCGTGTTGGATAATCCAACCTTGTGCTCTG
TGGCATCGAGGCGAAAGCTTGCGGCACTGGATGGTTTAGCGCGTAGTGGC
CTCATCGTCGCGGGGGGCGTGCGAACGACCAATGTTGAGACTAAGGAGCA
GTGGGACTGTCCGAACGCCTGGAGCCCCATTGTGCACATGATTATCGATG
GATTAGAAAATTTGGGCGCCGGCGACGCGGACCGACTGGCTCGGTCCCTG
GCGAAAGCATGGCTGGAGAGCAACTACCTTGGATGGGCCTCAACGGGATA
CATGTACGAGAAGTACAATGGGAAGGTACCCGGAGCGCGGGGGGAAGGCG
GTGAATACTACCCTCAGGTAGGCTTTGGCTGGACGAACGGAGTCGTATTG
CACTTGCTTAAAACCTACGGACAATTTCTCAAACATGAGGCAGCTGCTCC
TCCATCAACGGAGTCTCCTGCCGAACAGTAAGCCAAAAAGTTGAATTTGC
CTTAAAATATATCTAGAACCTGTCTATTGGCCTTTTGTCACGTGAAAGGC
GCGGGAGGGATGAAGACCTGAAAGAAACTAAAAACGATGAATTACGAGTG
ACTCTTGAAACCTTGAAGGCTCCAGGATTGTGAATGGGCAAGGTGCTATT
GAAAATGCTGTCGACCTTCCCTTCGATTAGTTGTTGCCATCAGCAAGCTG
CTGAATCGCAGCGCTTATGTATAAATGAGAGTGGTGCGTACATCTGACTG
AGTGAAACGGATTTTTTGGACAAAAAAAGGACTAGAAACAGCATTTTAGA
AAGGTAGAAAGGTGAAGGTGAATGTTATTGGGACGATTACGTATACAAAT
CTCGTAAATGCGCCATCAAGTCAAAGAAATCGTAGGACATTGAGCAACTT
TTTCTATCTCCTTTCCATGGCATCAGTGCTAGGCAAAGCTGTTTATGACG
CTCGCGGCCTTTTCCTCGTCGCTTAGGCCATCCATATATATGCATAGAGG
AGTAATATATGCGAATAAGCCCCTTGGAAAGCACATGAAGGCCTTACGTA
ATCAGATCATGTACACAACATAATACCGAATTGGCTCTTATGTGACCATG
ATGCGGGATACATACATGTATGCAAGTATACTTCCACCCACAACAGTCAT
GAGAATGACGATGAAGGAAACTATTCCCACAAAAAAGGGAAAGGAATTTG
GGCTTCCACTCCCCACGCTCACACCGTTAAACAAATTCATACC

protein sequence of rna8049

>rna8049-protein ID=rna8049-protein|Name=rna8049|organism=Nannochloropsis gaditana|type=polypeptide|length=446bp
MQDKDVKSVIPFHAVRHRSEGRRWRVILHSSRISRPALRALSALLFLSLS
VIVDAGSLETLKTLKNAQGALPSTQLSAIVPRHDQSKDFELYDAPTELME
DGLSPPPRQPAQAHTSEKDYFGVRGGNGWIDEDGKDDIDAARGVIANWRK
STPLRPCFGCTPGLPMAFSSMFSECSFVTLGAHMGIAPAYSKLVVRTNDT
VLVRLVGSRLFFSEASDLFSFLTDFLHGTCPESNRLQNLTSMCSWNGART
GPDIDAPPCTIYAINATKIHDQVPGGAALDRPQAHGLYGPGTYRFSFRDF
ENNDFPYAFWVLQYLRAEQAGGNLANVTVVGQFNNQPPPVPPVKLFTSVF
IAAVILFTVFAVFFNPWVGAEAADLGTRVPWFRRNFLRSHNLGSVSQPRS
YIPTRRNSAWMPSSSSASGYHMRSMVSSEDYHLLETGPYSSSPSTL

mRNA from alignment at KK037247.1:435723..437873+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8049 ID=rna8049|Name=rna8049|organism=Nannochloropsis gaditana|type=mRNA|length=2151bp|location=Sequence derived from alignment at KK037247.1:435723..437873+ (Nannochloropsis gaditana)
TCAAGAGCATGACCATGCTGAATAAAAAAGGTCCCAGCGGGTTTCTCGGC
TAAAGCCTCACCATATTTGAGCGTCACTTATCGAATTAATGAAGGGGGAA
AATTATTTGTCGAGGTGCTGACAAAATATTCCGTCATGATCTGGAAATTG
AAGCCCAAAAGAGCATCAAGTCGCTCTGTTGCATTGAACTTCTTGTGATC
ATAATTCTTTGCAGCCAAGGCCATGCCACCGCGAGCGAAGAGTCGACTAT
GTCATGTGGAGAACACCTCCTAAAGACAAATGAAACTCTGCTTTGTGTGC
TCAAGGATCCGATGAGGAATGGGAAGTCTGCCGCTTTGGACATGCCTTTG
TAGTTGGTGTGTTTTCTGCCCGCCCTGACAACAGTGATGAGACGTAGGCT
AGTAGGGGcacagaaaagaagggcttGCGCCAGAAGGCGATGCTGGAGCC
TTGTCAGGCTGAAGCAACAGCCAAAGAACTATGATGGCAGATCTCATGCA
CCACATGTCACTCATAAATCTGTATCTTGTTTCCATTAGCTCTTTGTAGG
TGGCAGGAGCAGAAGATTCGCAcgtcttttttttcctggcCTGCATTCCA
ACGTCTCAAGACAGACTCGGGAAGAGCGACGACGGAGAGACGGGGTGTGA
TCTTTGACCGCGACTTTGAAACAAGGCCGTCATGCAAGATAAGGATGTCA
AATCAGTAATTCCATTTCATGCTGTACGACACAGGAGTGAAGGCAGAAGG
TGGAGGGTAATTTTGCACTCCAGCCGGATTTCAAGACCTGCGTTAAGAGC
ACTCTCagcgctcctcttcctgtccctATCAGTAATTGTTGACGCCGGTA
GCCTAGAGACACTTAAGACGTTAAAAAATGCACAAGGTGCTTTGCCCTCC
ACTCAGTTATCAGCTATCGTCCCTAGACACGATCAAAGCAAAGATTTCGA
GCTCTACGACGCACCAACTGAGCTCATGGAAGATGGCCTATcacctccgc
cgcgccaACCCGCGCAGGCACACACGTCGGAAAAAGATTATTTTGGAGTG
AGAGGCGGTAATGGCTGGATCGATGAGGACGGCAAAGATGATATAGATGC
CGCACGCGGGGTAATCGCAAATTGGCGCAAGTCAACCCCGCTGAGGCCTT
GCTTCGGGTGCACGCCCGGGTTACCTATGGCCTTCAGCAGCATGTTCAGT
GAGTGCTCTTTTGTCACTTTGGGAGCGCATATGGGCATTGCACCTGCTTA
CTCCAAGCTGGTCGTGCGCACCAATGACACAGTCTTGGTCCGGCTGGTGG
GgtcccgcctcttcttctccgaaGCCAGCGACCTATTCTCTTTCCTAACT
GATTTTTTGCATGGGACATGTCCAGAAAGCAATCGGCTGCAAAATTTAAC
GTCGATGTGCTCTTGGAATGGGGCGAGAACAGGGCCAGACATAGATGCGC
CGCCCTGCACGATATACGCCATCAACGCCACCAAGATCCACGATCAGGtc
cctggaggagctgcactCGATCGCCCACAAGCGCATGGTTTGTACGGACC
GGGGACGTATCGTTTTTCCTTTCGAGACTTTGAGAACAATGACTTCCCAT
ACGCCTTCTGGGTCTTACAATACTTGCGTGCTGAGCAAGCGGGTGGGAAC
CTGGCAAACGTGACTGTGGTTGGTCAATTCAACAACCAGCCCCCCCCTGT
GCCGCCAGTGAAGCTATTCACAAGTGTCTTTATCGCAGCCGTGATCCTCT
TCACGGTATTCGCCGTATTTTTCAACCCTTGGGTGGGCGCCGAAGCCGCG
GACCTAGGGACCCGCGTTCCTTGGTTTCGACGGAACTTTTTAAGATCACA
CAACCTGGGTTCTGTGTCTCAGCCGAGATCATACATTCCAACACGTCGGA
ATTCTGCGTGGATGCCTTCGAGCAGCAGTGCGAGCGGCTATCACATGCGC
TCTATGGTATCTAGCGAGGATTATCACCTATTAGAAACCGGCCCCTATAG
TTCTTCTCCATCAACTCTGTGAAAATTTGACAAAGGGCTCCTCTTTTTTG
TAGCTTCTGATAAAGGTATAACTAGCTTTTGTATAAAGATCCGCAGACAC
GTCTTGTATAAACAGTTGTGAAAGAAAAGCCGTTGACCTCCTGGCAATAC
C

Coding sequence (CDS) from alignment at KK037247.1:435723..437873+

>rna8049 ID=rna8049|Name=rna8049|organism=Nannochloropsis gaditana|type=CDS|length=1341bp|location=Sequence derived from alignment at KK037247.1:435723..437873+ (Nannochloropsis gaditana)
ATGCAAGATAAGGATGTCAAATCAGTAATTCCATTTCATGCTGTACGACA
CAGGAGTGAAGGCAGAAGGTGGAGGGTAATTTTGCACTCCAGCCGGATTT
CAAGACCTGCGTTAAGAGCACTCTCagcgctcctcttcctgtccctATCA
GTAATTGTTGACGCCGGTAGCCTAGAGACACTTAAGACGTTAAAAAATGC
ACAAGGTGCTTTGCCCTCCACTCAGTTATCAGCTATCGTCCCTAGACACG
ATCAAAGCAAAGATTTCGAGCTCTACGACGCACCAACTGAGCTCATGGAA
GATGGCCTATcacctccgccgcgccaACCCGCGCAGGCACACACGTCGGA
AAAAGATTATTTTGGAGTGAGAGGCGGTAATGGCTGGATCGATGAGGACG
GCAAAGATGATATAGATGCCGCACGCGGGGTAATCGCAAATTGGCGCAAG
TCAACCCCGCTGAGGCCTTGCTTCGGGTGCACGCCCGGGTTACCTATGGC
CTTCAGCAGCATGTTCAGTGAGTGCTCTTTTGTCACTTTGGGAGCGCATA
TGGGCATTGCACCTGCTTACTCCAAGCTGGTCGTGCGCACCAATGACACA
GTCTTGGTCCGGCTGGTGGGgtcccgcctcttcttctccgaaGCCAGCGA
CCTATTCTCTTTCCTAACTGATTTTTTGCATGGGACATGTCCAGAAAGCA
ATCGGCTGCAAAATTTAACGTCGATGTGCTCTTGGAATGGGGCGAGAACA
GGGCCAGACATAGATGCGCCGCCCTGCACGATATACGCCATCAACGCCAC
CAAGATCCACGATCAGGtccctggaggagctgcactCGATCGCCCACAAG
CGCATGGTTTGTACGGACCGGGGACGTATCGTTTTTCCTTTCGAGACTTT
GAGAACAATGACTTCCCATACGCCTTCTGGGTCTTACAATACTTGCGTGC
TGAGCAAGCGGGTGGGAACCTGGCAAACGTGACTGTGGTTGGTCAATTCA
ACAACCAGCCCCCCCCTGTGCCGCCAGTGAAGCTATTCACAAGTGTCTTT
ATCGCAGCCGTGATCCTCTTCACGGTATTCGCCGTATTTTTCAACCCTTG
GGTGGGCGCCGAAGCCGCGGACCTAGGGACCCGCGTTCCTTGGTTTCGAC
GGAACTTTTTAAGATCACACAACCTGGGTTCTGTGTCTCAGCCGAGATCA
TACATTCCAACACGTCGGAATTCTGCGTGGATGCCTTCGAGCAGCAGTGC
GAGCGGCTATCACATGCGCTCTATGGTATCTAGCGAGGATTATCACCTAT
TAGAAACCGGCCCCTATAGTTCTTCTCCATCAACTCTGTGA

Synonyms

Publications