rna8045, rna8045 (mRNA) Nannochloropsis gaditana

Overview
Namerna8045
Unique Namerna8045
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1085
Alignment locationKK037247.1:426711..428787 +

Link to JBrowse

Properties
Property NameValue
Productpyridine nucleotide-disulfide oxidoreductase domain-containing protein 2
Orig transcript idgnl|cribi|Naga_100023g33.3960.mrna
Orig protein idgnl|cribi|Naga_100023g33.3960
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:426711..428787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100023g33gene7789Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8045rna8045-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22644.1cds8023Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8045 ID=rna8045|Name=rna8045|organism=Nannochloropsis gaditana|type=mRNA|length=1085bp
ATGGTTATGCAGGGCCTCCTTGGGATTCACAAACGCGTACTCAGTAACGT
GATGTCTTACGAGGAGCTGGCTATGTGCAGTCGGCCGTACGCGACTCCTT
GCGGAACGTAGAAGGTTTTATGAGGACCTCGTATGCCCGGCCACGAATTT
TTGGCTGGGTGGCAGCGAGGAATGAAGAGGACTCCCTTTCCTTGCGAACT
ACGATAGTGACGGTAGCATATTTTCAAGGCTCCCCGCGGTGTATTCCAGA
ATGGAGTTCACACGACTACAAAATTACGTTTTTGATGAAGAGCTCTCTCG
CCACTCCCTATTTTCTGGCATTGGTCATTAAACTTCCCTTGTGCGCTTGT
CCATCATCACCCACTTTGACAGAAACCATGGCTGACGTCGAGGGTTTGTC
CGCAGAGGAGATTGCTCGCATCGCGGAGTCGCGCAAGAAGCGCTCATTCA
AGAAATTTACTTTTCGCGGCGTGGATTTGGACAAGCTCTTGGACCTGACC
CCCGAAGAGCTCCTGCCCCTGTTCACATCGCGAGTCCGCCGGCGCCTCCA
ACGGCCTCTCAAGCGTAAGCATAAGACGTTGATTAAGAAGCTGAAAAACG
CCAAGAAAAACACAGGCCCCCTGGAGAAGCCAGCCATTGTCAAGACGCAC
CTTCGCGACTTGGTCATCACCCCGGAACTGATCGGTTCCATCGTGGCCAT
CTACAACGGCAAACTCTTCAACCCCATCGAAATCAAGCCCGAGATGGTTG
GCATGTATACTGGGGAGTTCTCCATGTCCTACCGACCTGTCAAGCACGGG
CGACCCGGTATCGGCTCTACAAACTCCTCTCGCTTCATTCCTCTCAAGTA
AATGTGATTTTTTCGGTGCACGAGCTTGTGGCTGGCGGATGAGGCCAACG
GACTTCTTATGTCGTCTGCTTTCGCTCTCCCTGCTGGAGATGGTTGCCTT
TTTCCTCTGACCTCTGTAGGGGCGATAATGTAGAACAAAAGGCATCAAGA
AATGGCAAGTGATGGACTGGTAAAGGAATAAAATCATTGCCTTGCGAGGC
CTCGGCCGTGAGCTTGCGAGACAACTGTCCGCCGA
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protein sequence of rna8045

>rna8045-protein ID=rna8045-protein|Name=rna8045|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MKIRAAIRANHLLRPALRRSTVTGACGNLHAVDSTLPPSHSPKYETSPFP
FIAPVRRKRDAIIVGGGHNGLVAAAYLAKQGLDVLVLERRTLLGGAAVTE
EIVHGFKFSRASYLAGLLRPQIITELGLEKHGFKYLPRDPSSFTPTNVAG
RHLILGSSEEENWQSIAQFSTRDADAFVEYEDFLGKARELVEPLLDGGPP
NPFDQAAKWKERRHTLQTLKTLLSAGWKHRQSLLPFYELFTAPAAHLLDR
WFESDILKATLATDAVIGAMIGPRQAGSAYVLLHHVMGEAAGRKGVWAYV
EGGMGAISKSIAEAAKAWGAEVVTSATVTRLVYDDAQKRIAGVEMQDGTR
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mRNA from alignment at KK037247.1:426711..428787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8045 ID=rna8045|Name=rna8045|organism=Nannochloropsis gaditana|type=mRNA|length=2077bp|location=Sequence derived from alignment at KK037247.1:426711..428787+ (Nannochloropsis gaditana)
AGTCAATACCCAATGCACAGGTATCACTTACTTAGAATGCCATGAAAATT
CGGGCAGCTATCAGAGCAAaccatctcctccggccGGCACTAAGGCGATC
AACTGTTACTGGGGCATGTGGCAACCTTCATGCAGTTGACAGTACgttgc
ctccctctcataGCCCCAAATATGAaacctctcctttccccttcatcgCC
CCGGTGCGGAGAAAGCGCGATGCCATCATCGTCGGTGGGGGACACAACGG
CCTGGTTGCCGCAGCATACCTGGCAAAGCAGGGCCTTGACGTGTTGGTTT
TGGAAAGAAGAACTCTGCTTGGTGGTGCGGCCGTGACAGAAGAGATCGTG
CACGGGTTTAAGTTCAGCCGTGCTTCATATCTCGCGGGATTACTGCGACC
ACAGATCATCACAGAGCTAGGTTTGGAAAAACACGGCTTCAAATACCTCC
CTCGAGATCCTTCTTCTTTTACTCCCACAAATGTAGCGGGCAGGCACCTT
ATACTGGGGAgcagtgaggaggaaaactGGCAGTCGATCGCTCAATTTTC
GACGCGCGACGCCGACGCCTTCGTCGAGTACGAGGACTTTTTAGGCAAGG
CCCGCGAGCTAGTGGAGCCATTGCTGGATGGGGGGCCACCGAATCCCTTC
GACCAGGCCGCGAAATGGAAGGAACGCAGGCACACTCTTCAGACTTTGAA
GACACTTTTATCTGCGGGGTGGAAGCATCGTCAGTCCCTTTTGCCTTTCT
ACGAGCTCTTCACGGCACCTGCTGCTCACTTATTGGATCGTTGGTTTGAA
TCGGATATCTTGAAGGCAACGCTGGCGACAGACGCGGTGATCGGTGCCAT
GATTGGCCCCAGGCAGGCAGGGTCGGCCTATGTATTGCTGCACCACGtca
tgggggaggcggcgggccgAAAAGGCGTATGGGCGTACgtagaggggggg
atgggcgcCATTTCGAAGAGTATTGCCGAAGCAGCGAAGGCATGGGGAGC
GGAAGTTGTAACAAGTGCTACGGTCACGCGGTTAGTGTATGATGACGCTC
AAAAAAGGATCGCAGGGGTGGAAATGCAGGACGGCACGCGGTAAGAGTAT
TTCTTTCGGAGCGTTCTGTCAAGACTTCATCGACAGCTTATGAGCATTGC
TTGTCCCTCACCTATCATAAATGTAGGCTAGAAGCATCCGTGGTTCTTTC
AAATGGGACACCCTATCACACCTTTCTTGAGCTTCTTCCCAGTAACGTGG
CTCGCGAGTCTTTGCCGCGCGACCTCCTCACACGCATCAAGCATATTGAT
TATTCCTCTGGGGTATTCAAAATAAATCTGGCATTAGATCGCCTCCCTAA
TTTCATTTGCTGTCCATCTGTCGACGCGGGAATGGCAGGTCCCCAACATC
GCGGCACAATCCACTTTGAAAACAATGTGCAGGAGATCGAAGATGCATAT
TTGGAGGCATATGTGAATCGACGGCCAAGTTCCCGACCAGTTATCGAGAT
GACGATCCCCTCGGTGCTGGACAGCACTCTTGCCCCACCTGGCAAGCATG
TCGCTTCTTTATTTGTGCAATACGCTCCTTACGCTCTGGATTCAAAGGTG
GGAAGTTGGAAGGACGAAAACTTCAAAGCGGCATTCGCGCGCAGGGTTTT
CCAAATCATAGACGAAAAAGCTCCCGGCTTTTCCACTTCCATACTGGGTT
ACGACTTGCTTTCACCGTTAGATTTGGAGCGAGTATTTGGTTTGCATGGT
GGTAATATCTTCCATGGTAGTCTAAGCCTCCACCAGCTAGCTTACGCCCG
TCCATCTTATCGGACTCCTCTCCCGGGACTGTATCTATGTGGCGCTGGGA
CTCATCCTGGGGGCGGCGTTATGGGGGCACCCGGTCGGAACTGTGCACGC
GTGGTACTGAGTGACCTTGGAAGATGAGAGATTTGGATAGTTTGGAATAC
GCTTGGCATAAAAGCATGTAGACCTAAAAATATTCATAATTTGATTGAAT
GAGTATGGTACGTTGCTTTTTTTAAATGGTACGATGCTTTTTTATTGACC
CGTTCGTGATGTCAGGCACTGTACTTG
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Coding sequence (CDS) from alignment at KK037247.1:426711..428787+

>rna8045 ID=rna8045|Name=rna8045|organism=Nannochloropsis gaditana|type=CDS|length=1053bp|location=Sequence derived from alignment at KK037247.1:426711..428787+ (Nannochloropsis gaditana)
ATGAAAATTCGGGCAGCTATCAGAGCAAaccatctcctccggccGGCACT
AAGGCGATCAACTGTTACTGGGGCATGTGGCAACCTTCATGCAGTTGACA
GTACgttgcctccctctcataGCCCCAAATATGAaacctctcctttcccc
ttcatcgCCCCGGTGCGGAGAAAGCGCGATGCCATCATCGTCGGTGGGGG
ACACAACGGCCTGGTTGCCGCAGCATACCTGGCAAAGCAGGGCCTTGACG
TGTTGGTTTTGGAAAGAAGAACTCTGCTTGGTGGTGCGGCCGTGACAGAA
GAGATCGTGCACGGGTTTAAGTTCAGCCGTGCTTCATATCTCGCGGGATT
ACTGCGACCACAGATCATCACAGAGCTAGGTTTGGAAAAACACGGCTTCA
AATACCTCCCTCGAGATCCTTCTTCTTTTACTCCCACAAATGTAGCGGGC
AGGCACCTTATACTGGGGAgcagtgaggaggaaaactGGCAGTCGATCGC
TCAATTTTCGACGCGCGACGCCGACGCCTTCGTCGAGTACGAGGACTTTT
TAGGCAAGGCCCGCGAGCTAGTGGAGCCATTGCTGGATGGGGGGCCACCG
AATCCCTTCGACCAGGCCGCGAAATGGAAGGAACGCAGGCACACTCTTCA
GACTTTGAAGACACTTTTATCTGCGGGGTGGAAGCATCGTCAGTCCCTTT
TGCCTTTCTACGAGCTCTTCACGGCACCTGCTGCTCACTTATTGGATCGT
TGGTTTGAATCGGATATCTTGAAGGCAACGCTGGCGACAGACGCGGTGAT
CGGTGCCATGATTGGCCCCAGGCAGGCAGGGTCGGCCTATGTATTGCTGC
ACCACGtcatgggggaggcggcgggccgAAAAGGCGTATGGGCGTACgta
gagggggggatgggcgcCATTTCGAAGAGTATTGCCGAAGCAGCGAAGGC
ATGGGGAGCGGAAGTTGTAACAAGTGCTACGGTCACGCGGTTAGTGTATG
ATGACGCTCAAAAAAGGATCGCAGGGGTGGAAATGCAGGACGGCACGCGG
TAA
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Synonyms
Publications