rna8030, rna8030 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8030
Unique Name	rna8030
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2123
Alignment location	KK037247.1:390670..393136 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100023g16.3989.mrna
Orig protein id	gnl\|cribi\|Naga_100023g16.3989
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:390670..393136 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g16	gene7774	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22673.1	cds8008	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8030	rna8030-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:390670..393136-
coding sequence from alignment at KK037247.1:390670..393136-

mRNA sequence

>rna8030 ID=rna8030|Name=rna8030|organism=Nannochloropsis gaditana|type=mRNA|length=2123bp
CGCGCACATATTCACAACAACCAGTTTCAACAAGCAATGTCCCCCCACAT
GTTTATGCAAACGTGTATTTTGATCTGCTGAAACAGGCGAAATCATGTCA
GGATCTTCTATCAAAGTGAAAGATGAACAAGGCAAGTCATTTGATCTGCC
TCTTCGTAGCAAGAACTCTGGTCGCAGGCCTCCAACCACTGGCAGCAAAA
AAGCTACCACACCCAAGAAGGTGACCACACCCAAGCGTGCGACCCCCAAG
AAGAGTATGTCTAAGCAGAGTCAACGTTCAAAAAGCTATAGCAAACAGGC
CGGAGCGGCAGACTTAATGTTCGCAGGCGGGAATTCCCTTGCCGATACTG
AATTCTCTTTAGCGTCCCCTACCAAGCGTACCGGTTTACCCTCCTTCCCC
CCCTCCCAAAAAAATGCTGGTTGCGCAGAGGACAAAGATGAAGAGGACAG
TGGTAATTTGAAACTTGGACGAAAAATCTATCTTTTTTCGGACAACGACG
GCGAAGCGGACGTAGACTTCGAAAAGAAAGGCACGGGCAAGGAGGAAAAT
GGTGCAAAGGACGATTGCCCGCACAGCTTATTTTCGACACCGCAGAAACC
AAGAAGCACCAAGTCATTTGCTACACCGACCTCCATACAGTGCTCTCCTT
CCGTCAAAAATGTATACTCCATTATTCGGCGTTGCACTGGCTCGCTAGGC
GGCAACGGAAGTGGAGGCGCCATCTACGGAGAGCTTACCACAGGAAGCAT
GCAACGGGTTGTGGACATGATGGTAACACACTGCGCACTCGGCAGAGACA
GTATTTTCATTGATATAGGGGCAGGTCTAGGGAAGCCTAATATTCATGTG
TCCCAGTACCCCGGAGTCGCAGCCTCATACGGCATTGAACATGAGCAAGT
ACGATGGCAGCTTTCCCTTCACAACCTCAGGCACCTCCTCCAGGCCGCTG
GAGCTGAAGCAAAAGACGGTGAGACAGCGGATGCGAAGGCTGATGAAAGG
GGCGCTGAGATGAGTGGGAGTGGTCGGATTAGTGAAGAATTTGCGTCAAG
CCGCATAAACCACAAAATCTTTTTCCACTACGGCGACGTCACCGAGGCTC
GCACGCTTGATCCTTTCACACACGTATACATGTTCGACATCGGCTTTCCA
CCCACATTGTTTTATGAGATTGCTGACAGATTTAATATCTCGCAATGTCC
TTTTCTCATCTGCTATCATGGCCCGAAGCTGATCGTGGATAGATACGGGT
TTGACGTCACCTTGATTTCGCAGGTTCAGACCTCTATGCATGGTTCCAGT
GAAGGCCACACGGCCTACTGCTATAAGCGCACCAAAACAAAGAGGCGGTC
ACTAAAAGTCTCACCTGTAGATGCACTTTTCAAGGAGGGGCTTGACATGA
TTCGCGAGGGTTCGTTGGAGAGCCTGCACGCTTGGGTCAAGCAGAAGATG
GACATTCACTTTACGAGCCCCCGACCCGCGCGTCGCCGCCGCTCCACTAA
TCTTTTCTTGAACCAAATGTGAACTCGAGGACAGGCCGAGTTGATGAAGA
GATATGGTGAGGATCGTCTTATCTATACTACCTTGGAAGAACTTAGGTTC
TTTGCACTGCGTGTCTTCGGGGGCACCTCACAAGTCCTCGAATTCTACGC
GCGCACGTGCATCGTCAATTTTTCCTCGACCCCTTCGTGGTAAAGTTTGT
TTATAGAAATAAGCAATGTCCACGCATTATTTTCACTGTCCGAGGCTGTA
GGTAGGATACTTACAGTCCTGACAAAGATCACCATGTGAACTGATTTATT
AAGTGTACTGCTTGTATCTGAAAGCCATCTTTCGCCCCCAAAAACCCTGT
TTGAGAGACAAAATAAAGACAATAAAGTATGCGAATTCGCCACCGAAGTG
CCTTCAGCAATTGTCACACTAAGAAGGAGGTTGAAAACACTGTCGTGTTT
CAGCTGTCGCTCGCAAGAGGTACATGAGGCACCGATGTATTAGGTCGCGC
CAATGTGGTGATTATATTTACAATTATGGTGAGATAACGCTTTGGAGAAG
CGCAAGGAACTGTTCCCACACGTAAAGTTAATAGGAGGCTTTAAAGCTCC
AAATCCACTTGTGCACGTTTTTC

protein sequence of rna8030

>rna8030-protein ID=rna8030-protein|Name=rna8030|organism=Nannochloropsis gaditana|type=polypeptide|length=426bp
MSQPLTLWTFHSILSYSKQAGAADLMFAGGNSLADTEFSLASPTKRTGLP
SFPPSQKNAGCAEDKDEEDSGNLKLGRKIYLFSDNDGEADVDFEKKGTGK
EENGAKDDCPHSLFSTPQKPRSTKSFATPTSIQCSPSVKNVYSIIRRCTG
SLGGNGSGGAIYGELTTGSMQRVVDMMVTHCALGRDSIFIDIGAGLGKPN
IHVSQYPGVAASYGIEHEQVRWQLSLHNLRHLLQAAGAEAKDGETADAKA
DERGAEMSGSGRISEEFASSRINHKIFFHYGDVTEARTLDPFTHVYMFDI
GFPPTLFYEIADRFNISQCPFLICYHGPKLIVDRYGFDVTLISQVQTSMH
GSSEGHTAYCYKRTKTKRRSLKVSPVDALFKEGLDMIREGSLESLHAWVK
QKMDIHFTSPRPARRRRSTNLFLNQM

mRNA from alignment at KK037247.1:390670..393136-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8030 ID=rna8030|Name=rna8030|organism=Nannochloropsis gaditana|type=mRNA|length=2467bp|location=Sequence derived from alignment at KK037247.1:390670..393136- (Nannochloropsis gaditana)
CGCGCACATATTCACAACAACCAGTTTCAACAAGCAATGTCCCCCCACAT
GTTTATGCAAACGTGTATTTTGATCTGCTGAAACAGGCGAAATCATGTCA
GGATCTTCTATCAAAGTGAAAGATGAACAAGGCAAGTCATTTGATCTGCC
TCTTCGTAGCAAGAACTCTGGTCGCAGGCCTCCAACCACTGGCAGCAAAA
AAGCTACCACACCCAAGAAGGTGACCACACCCAAGCGTGCGACCCCCAAG
AAGAGTATGTCTAAGCAGAGTCAACGTTCAAAAAGGTGAGATATCGAAGA
CAGATATATTCGCCCGGCTCAGACGGCTCATCGTGCCACTCTGAAAATCA
AGAGCACTGCGAAAAGCACGCTTTGGAGTAGTCCTCTGTGATAGTATGAT
GGTTTCACAACTCTTCTTAGACATCAGATTTTTTATTCGATTGGTGGAAC
TGATACCACATTTTGATTTTTGACCATGCATCAATAAGATGTTCTCCCCA
AACGAGTACAGAGTACAGTGTAACTTAATTTTGTCAGCCTACTTAGCTAG
GTGTAATCTGTTGATGTTGGATTGCTGTCGGTCACATGTCCCAGCCCCTC
ACTCTGTGGACCTTTCATTCAATTTTAAGCTATAGCAAACAGGCCGGAGC
GGCAGACTTAATGTTCGCAGGCGGGAATTCCCTTGCCGATACTGAATTCT
CTTTAGCGTCCCCTACCAAGCGTACCGGTTTACCCTCCTTCCCCCCCTCC
CAAAAAAATGCTGGTTGCGCAGAGGACAAAGATGAAGAGGACAGTGGTAA
TTTGAAACTTGGACGAAAAATCTATCTTTTTTCGGACAACGACGGCGAAG
CGGACGTAGACTTCGAAAAGAAAGGCACGGGCAAGGAGGAAAATGGTGCA
AAGGACGATTGCCCGCACAGCTTATTTTCGACACCGCAGAAACCAAGAAG
CACCAAGTCATTTGCTACACCGACCTCCATACAGTGCTCTCCTTCCGTCA
AAAATGTATACTCCATTATTCGGCGTTGCACTGGCTCGCTAGGCGGCAAC
GGAAGTGGAGGCGCCATCTACGGAGAGCTTACCACAGGAAGCATGCAACG
GGTTGTGGACATGATGGTAACACACTGCGCACTCGGCAGAGACAGTATTT
TCATTGATATAGGGGCAGGTCTAGGGAAGCCTAATATTCATGTGTCCCAG
TACCCCGGAGTCGCAGCCTCATACGGCATTGAACATGAGCAAGTACGATG
GCAGCTTTCCCTTCACAACCTCAGGCACCTCCTCCAGGCCGCTGGAGCTG
AAGCAAAAGACGGTGAGACAGCGGATGCGAAGGCTGATGAAAGGGGCGCT
GAGATGAGTGGGAGTGGTCGGATTAGTGAAGAATTTGCGTCAAGCCGCAT
AAACCACAAAATCTTTTTCCACTACGGCGACGTCACCGAGGCTCGCACGC
TTGATCCTTTCACACACGTATACATGTTCGACATCGGCTTTCCACCCACA
TTGTTTTATGAGATTGCTGACAGATTTAATATCTCGCAATGTCCTTTTCT
CATCTGCTATCATGGCCCGAAGCTGATCGTGGATAGATACGGGTTTGACG
TCACCTTGATTTCGCAGGTTCAGACCTCTATGCATGGTTCCAGTGAAGGC
CACACGGCCTACTGCTATAAGCGCACCAAAACAAAGAGGCGGTCACTAAA
AGTCTCACCTGTAGATGCACTTTTCAAGGAGGGGCTTGACATGATTCGCG
AGGGTTCGTTGGAGAGCCTGCACGCTTGGGTCAAGCAGAAGATGGACATT
CACTTTACGAGCCCCCGACCCGCGCGTCGCCGCCGCTCCACTAATCTTTT
CTTGAACCAAATGTGAACTCGAGGACAGGCCGAGTTGATGAAGAGATATG
GTGAGGATCGTCTTATCTATACTACCTTGGAAGAACTTAGGTTCTTTGCA
CTGCGTGTCTTCGGGGGCACCTCACAAGTCCTCGAATTCTACGCGCGCAC
GTGCATCGTCAATTTTTCCTCGACCCCTTCGTGGTAAAGTTTGTTTATAG
AAATAAGCAATGTCCACGCATTATTTTCACTGTCCGAGGCTGTAGGTAGG
ATACTTACAGTCCTGACAAAGATCACCATGTGAACTGATTTATTAAGTGT
ACTGCTTGTATCTGAAAGCCATCTTTCGCCCCCAAAAACCCTGTTTGAGA
GACAAAATAAAGACAATAAAGTATGCGAATTCGCCACCGAAGTGCCTTCA
GCAATTGTCACACTAAGAAGGAGGTTGAAAACACTGTCGTGTTTCAGCTG
TCGCTCGCAAGAGGTACATGAGGCACCGATGTATTAGGTCGCGCCAATGT
GGTGATTATATTTACAATTATGGTGAGATAACGCTTTGGAGAAGCGCAAG
GAACTGTTCCCACACGTAAAGTTAATAGGAGGCTTTAAAGCTCCAAATCC
ACTTGTGCACGTTTTTC

Coding sequence (CDS) from alignment at KK037247.1:390670..393136-

>rna8030 ID=rna8030|Name=rna8030|organism=Nannochloropsis gaditana|type=CDS|length=1281bp|location=Sequence derived from alignment at KK037247.1:390670..393136- (Nannochloropsis gaditana)
ATGTCCCAGCCCCTCACTCTGTGGACCTTTCATTCAATTTTAAGCTATAG
CAAACAGGCCGGAGCGGCAGACTTAATGTTCGCAGGCGGGAATTCCCTTG
CCGATACTGAATTCTCTTTAGCGTCCCCTACCAAGCGTACCGGTTTACCC
TCCTTCCCCCCCTCCCAAAAAAATGCTGGTTGCGCAGAGGACAAAGATGA
AGAGGACAGTGGTAATTTGAAACTTGGACGAAAAATCTATCTTTTTTCGG
ACAACGACGGCGAAGCGGACGTAGACTTCGAAAAGAAAGGCACGGGCAAG
GAGGAAAATGGTGCAAAGGACGATTGCCCGCACAGCTTATTTTCGACACC
GCAGAAACCAAGAAGCACCAAGTCATTTGCTACACCGACCTCCATACAGT
GCTCTCCTTCCGTCAAAAATGTATACTCCATTATTCGGCGTTGCACTGGC
TCGCTAGGCGGCAACGGAAGTGGAGGCGCCATCTACGGAGAGCTTACCAC
AGGAAGCATGCAACGGGTTGTGGACATGATGGTAACACACTGCGCACTCG
GCAGAGACAGTATTTTCATTGATATAGGGGCAGGTCTAGGGAAGCCTAAT
ATTCATGTGTCCCAGTACCCCGGAGTCGCAGCCTCATACGGCATTGAACA
TGAGCAAGTACGATGGCAGCTTTCCCTTCACAACCTCAGGCACCTCCTCC
AGGCCGCTGGAGCTGAAGCAAAAGACGGTGAGACAGCGGATGCGAAGGCT
GATGAAAGGGGCGCTGAGATGAGTGGGAGTGGTCGGATTAGTGAAGAATT
TGCGTCAAGCCGCATAAACCACAAAATCTTTTTCCACTACGGCGACGTCA
CCGAGGCTCGCACGCTTGATCCTTTCACACACGTATACATGTTCGACATC
GGCTTTCCACCCACATTGTTTTATGAGATTGCTGACAGATTTAATATCTC
GCAATGTCCTTTTCTCATCTGCTATCATGGCCCGAAGCTGATCGTGGATA
GATACGGGTTTGACGTCACCTTGATTTCGCAGGTTCAGACCTCTATGCAT
GGTTCCAGTGAAGGCCACACGGCCTACTGCTATAAGCGCACCAAAACAAA
GAGGCGGTCACTAAAAGTCTCACCTGTAGATGCACTTTTCAAGGAGGGGC
TTGACATGATTCGCGAGGGTTCGTTGGAGAGCCTGCACGCTTGGGTCAAG
CAGAAGATGGACATTCACTTTACGAGCCCCCGACCCGCGCGTCGCCGCCG
CTCCACTAATCTTTTCTTGAACCAAATGTGA

Synonyms

Publications