|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100023g16.3988.mrna |
| Orig protein id | gnl|cribi|Naga_100023g16.3988 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:390670..393136 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8029 ID=rna8029|Name=rna8029|organism=Nannochloropsis gaditana|type=mRNA|length=2353bp
CGTGGCAGAGCATGGCGGGTTAATTGTTGAAATTGAATGCAGCGGGCATT
GCTCATTTGTTCTATGAAACCCTTGTAAGGTACTTGGTTGCTACCAGGCG
GAGTTGGTCTCCACCTCGATTGTACAATGTGCTTTTCATGAACTTTACGC
ACTCGCATCAAGCGATCAACTGCATTCATGAGGTGTTTGCATCTGATCGC
TTCGATCTCTGCCGCCCCCACAAATCTGGATGAATCCGCGCACATATTCA
CAACAACCAGTTTCAACAAGCAATGTCCCCCCACATGTTTATGCAAACGT
GTATTTTGATCTGCTGAAACAGGCGAAATCATGTCAGGATCTTCTATCAA
AGTGAAAGATGAACAAGGCAAGTCATTTGATCTGCCTCTTCGTAGCAAGA
ACTCTGGTCGCAGGCCTCCAACCACTGGCAGCAAAAAAGCTACCACACCC
AAGAAGGTGACCACACCCAAGCGTGCGACCCCCAAGAAGAGTATGTCTAA
GCAGAGTCAACGTTCAAAAAGCAAACAGGCCGGAGCGGCAGACTTAATGT
TCGCAGGCGGGAATTCCCTTGCCGATACTGAATTCTCTTTAGCGTCCCCT
ACCAAGCGTACCGGTTTACCCTCCTTCCCCCCCTCCCAAAAAAATGCTGG
TTGCGCAGAGGACAAAGATGAAGAGGACAGTGGTAATTTGAAACTTGGAC
GAAAAATCTATCTTTTTTCGGACAACGACGGCGAAGCGGACGTAGACTTC
GAAAAGAAAGGCACGGGCAAGGAGGAAAATGGTGCAAAGGACGATTGCCC
GCACAGCTTATTTTCGACACCGCAGAAACCAAGAAGCACCAAGTCATTTG
CTACACCGACCTCCATACAGTGCTCTCCTTCCGTCAAAAATGTATACTCC
ATTATTCGGCGTTGCACTGGCTCGCTAGGCGGCAACGGAAGTGGAGGCGC
CATCTACGGAGAGCTTACCACAGGAAGCATGCAACGGGTTGTGGACATGA
TGGTAACACACTGCGCACTCGGCAGAGACAGTATTTTCATTGATATAGGG
GCAGGTCTAGGGAAGCCTAATATTCATGTGTCCCAGTACCCCGGAGTCGC
AGCCTCATACGGCATTGAACATGAGCAAGTACGATGGCAGCTTTCCCTTC
ACAACCTCAGGCACCTCCTCCAGGCCGCTGGAGCTGAAGCAAAAGACGGT
GAGACAGCGGATGCGAAGGCTGATGAAAGGGGCGCTGAGATGAGTGGGAG
TGGTCGGATTAGTGAAGAATTTGCGTCAAGCCGCATAAACCACAAAATCT
TTTTCCACTACGGCGACGTCACCGAGGCTCGCACGCTTGATCCTTTCACA
CACGTATACATGTTCGACATCGGCTTTCCACCCACATTGTTTTATGAGAT
TGCTGACAGATTTAATATCTCGCAATGTCCTTTTCTCATCTGCTATCATG
GCCCGAAGCTGATCGTGGATAGATACGGGTTTGACGTCACCTTGATTTCG
CAGGTTCAGACCTCTATGCATGGTTCCAGTGAAGGCCACACGGCCTACTG
CTATAAGCGCACCAAAACAAAGAGGCGGTCACTAAAAGTCTCACCTGTAG
ATGCACTTTTCAAGGAGGGGCTTGACATGATTCGCGAGGGTTCGTTGGAG
AGCCTGCACGCTTGGGTCAAGCAGAAGATGGACATTCACTTTACGAGCCC
CCGACCCGCGCGTCGCCGCCGCTCCACTAATCTTTTCTTGAACCAAATGT
GAACTCGAGGACAGGCCGAGTTGATGAAGAGATATGGTGAGGATCGTCTT
ATCTATACTACCTTGGAAGAACTTAGGTTCTTTGCACTGCGTGTCTTCGG
GGGCACCTCACAAGTCCTCGAATTCTACGCGCGCACGTGCATCGTCAATT
TTTCCTCGACCCCTTCGTGGTAAAGTTTGTTTATAGAAATAAGCAATGTC
CACGCATTATTTTCACTGTCCGAGGCTGTAGGTAGGATACTTACAGTCCT
GACAAAGATCACCATGTGAACTGATTTATTAAGTGTACTGCTTGTATCTG
AAAGCCATCTTTCGCCCCCAAAAACCCTGTTTGAGAGACAAAATAAAGAC
AATAAAGTATGCGAATTCGCCACCGAAGTGCCTTCAGCAATTGTCACACT
AAGAAGGAGGTTGAAAACACTGTCGTGTTTCAGCTGTCGCTCGCAAGAGG
TACATGAGGCACCGATGTATTAGGTCGCGCCAATGTGGTGATTATATTTA
CAATTATGGTGAGATAACGCTTTGGAGAAGCGCAAGGAACTGTTCCCACA
CGTAAAGTTAATAGGAGGCTTTAAAGCTCCAAATCCACTTGTGCACGTTT
TTC back to topprotein sequence of rna8029 >rna8029-protein ID=rna8029-protein|Name=rna8029|organism=Nannochloropsis gaditana|type=polypeptide|length=475bp
MSGSSIKVKDEQGKSFDLPLRSKNSGRRPPTTGSKKATTPKKVTTPKRAT
PKKSMSKQSQRSKSYSKQAGAADLMFAGGNSLADTEFSLASPTKRTGLPS
FPPSQKNAGCAEDKDEEDSGNLKLGRKIYLFSDNDGEADVDFEKKGTGKE
ENGAKDDCPHSLFSTPQKPRSTKSFATPTSIQCSPSVKNVYSIIRRCTGS
LGGNGSGGAIYGELTTGSMQRVVDMMVTHCALGRDSIFIDIGAGLGKPNI
HVSQYPGVAASYGIEHEQVRWQLSLHNLRHLLQAAGAEAKDGETADAKAD
ERGAEMSGSGRISEEFASSRINHKIFFHYGDVTEARTLDPFTHVYMFDIG
FPPTLFYEIADRFNISQCPFLICYHGPKLIVDRYGFDVTLISQVQTSMHG
SSEGHTAYCYKRTKTKRRSLKVSPVDALFKEGLDMIREGSLESLHAWVKQ
KMDIHFTSPRPARRRRSTNLFLNQM back to topmRNA from alignment at KK037247.1:390670..393136- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8029 ID=rna8029|Name=rna8029|organism=Nannochloropsis gaditana|type=mRNA|length=2467bp|location=Sequence derived from alignment at KK037247.1:390670..393136- (Nannochloropsis gaditana)
CGCGCACATATTCACAACAACCAGTTTCAACAAGCAATGTCCCCCCACAT
GTTTATGCAAACGTGTATTTTGATCTGCTGAAACAGGCGAAATCATGTCA
GGATCTTCTATCAAAGTGAAAGATGAACAAGGCAAGTCATTTGATCTGCC
TCTTCGTAGCAAGAACTCTGGTCGCAGGCCTCCAACCACTGGCAGCAAAA
AAGCTACCACACCCAAGAAGGTGACCACACCCAAGCGTGCGACCCCCAAG
AAGAGTATGTCTAAGCAGAGTCAACGTTCAAAAAGGTGAGATATCGAAGA
CAGATATATTCGCCCGGCTCAGACGGCTCATCGTGCCACTCTGAAAATCA
AGAGCACTGCGAAAAGCACGCTTTGGAGTAGTCCTCTGTGATAGTATGAT
GGTTTCACAACTCTTCTTAGACATCAGATTTTTTATTCGATTGGTGGAAC
TGATACCACATTTTGATTTTTGACCATGCATCAATAAGATGTTCTCCCCA
AACGAGTACAGAGTACAGTGTAACTTAATTTTGTCAGCCTACTTAGCTAG
GTGTAATCTGTTGATGTTGGATTGCTGTCGGTCACATGTCCCAGCCCCTC
ACTCTGTGGACCTTTCATTCAATTTTAAGCTATAGCAAACAGGCCGGAGC
GGCAGACTTAATGTTCGCAGGCGGGAATTCCCTTGCCGATACTGAATTCT
CTTTAGCGTCCCCTACCAAGCGTACCGGTTTACCCTCCTTCCCCCCCTCC
CAAAAAAATGCTGGTTGCGCAGAGGACAAAGATGAAGAGGACAGTGGTAA
TTTGAAACTTGGACGAAAAATCTATCTTTTTTCGGACAACGACGGCGAAG
CGGACGTAGACTTCGAAAAGAAAGGCACGGGCAAGGAGGAAAATGGTGCA
AAGGACGATTGCCCGCACAGCTTATTTTCGACACCGCAGAAACCAAGAAG
CACCAAGTCATTTGCTACACCGACCTCCATACAGTGCTCTCCTTCCGTCA
AAAATGTATACTCCATTATTCGGCGTTGCACTGGCTCGCTAGGCGGCAAC
GGAAGTGGAGGCGCCATCTACGGAGAGCTTACCACAGGAAGCATGCAACG
GGTTGTGGACATGATGGTAACACACTGCGCACTCGGCAGAGACAGTATTT
TCATTGATATAGGGGCAGGTCTAGGGAAGCCTAATATTCATGTGTCCCAG
TACCCCGGAGTCGCAGCCTCATACGGCATTGAACATGAGCAAGTACGATG
GCAGCTTTCCCTTCACAACCTCAGGCACCTCCTCCAGGCCGCTGGAGCTG
AAGCAAAAGACGGTGAGACAGCGGATGCGAAGGCTGATGAAAGGGGCGCT
GAGATGAGTGGGAGTGGTCGGATTAGTGAAGAATTTGCGTCAAGCCGCAT
AAACCACAAAATCTTTTTCCACTACGGCGACGTCACCGAGGCTCGCACGC
TTGATCCTTTCACACACGTATACATGTTCGACATCGGCTTTCCACCCACA
TTGTTTTATGAGATTGCTGACAGATTTAATATCTCGCAATGTCCTTTTCT
CATCTGCTATCATGGCCCGAAGCTGATCGTGGATAGATACGGGTTTGACG
TCACCTTGATTTCGCAGGTTCAGACCTCTATGCATGGTTCCAGTGAAGGC
CACACGGCCTACTGCTATAAGCGCACCAAAACAAAGAGGCGGTCACTAAA
AGTCTCACCTGTAGATGCACTTTTCAAGGAGGGGCTTGACATGATTCGCG
AGGGTTCGTTGGAGAGCCTGCACGCTTGGGTCAAGCAGAAGATGGACATT
CACTTTACGAGCCCCCGACCCGCGCGTCGCCGCCGCTCCACTAATCTTTT
CTTGAACCAAATGTGAACTCGAGGACAGGCCGAGTTGATGAAGAGATATG
GTGAGGATCGTCTTATCTATACTACCTTGGAAGAACTTAGGTTCTTTGCA
CTGCGTGTCTTCGGGGGCACCTCACAAGTCCTCGAATTCTACGCGCGCAC
GTGCATCGTCAATTTTTCCTCGACCCCTTCGTGGTAAAGTTTGTTTATAG
AAATAAGCAATGTCCACGCATTATTTTCACTGTCCGAGGCTGTAGGTAGG
ATACTTACAGTCCTGACAAAGATCACCATGTGAACTGATTTATTAAGTGT
ACTGCTTGTATCTGAAAGCCATCTTTCGCCCCCAAAAACCCTGTTTGAGA
GACAAAATAAAGACAATAAAGTATGCGAATTCGCCACCGAAGTGCCTTCA
GCAATTGTCACACTAAGAAGGAGGTTGAAAACACTGTCGTGTTTCAGCTG
TCGCTCGCAAGAGGTACATGAGGCACCGATGTATTAGGTCGCGCCAATGT
GGTGATTATATTTACAATTATGGTGAGATAACGCTTTGGAGAAGCGCAAG
GAACTGTTCCCACACGTAAAGTTAATAGGAGGCTTTAAAGCTCCAAATCC
ACTTGTGCACGTTTTTC back to topCoding sequence (CDS) from alignment at KK037247.1:390670..393136- >rna8029 ID=rna8029|Name=rna8029|organism=Nannochloropsis gaditana|type=CDS|length=2856bp|location=Sequence derived from alignment at KK037247.1:390670..393136- (Nannochloropsis gaditana)
CTATAGCAAACAGGCCGGAGCGGCAGACTTAATGTTCGCAGGCGGGAATT
CCCTTGCCGATACTGAATTCTCTTTAGCGTCCCCTACCAAGCGTACCGGT
TTACCCTCCTTCCCCCCCTCCCAAAAAAATGCTGGTTGCGCAGAGGACAA
AGATGAAGAGGACAGTGGTAATTTGAAACTTGGACGAAAAATCTATCTTT
TTTCGGACAACGACGGCGAAGCGGACGTAGACTTCGAAAAGAAAGGCACG
GGCAAGGAGGAAAATGGTGCAAAGGACGATTGCCCGCACAGCTTATTTTC
GACACCGCAGAAACCAAGAAGCACCAAGTCATTTGCTACACCGACCTCCA
TACAGTGCTCTCCTTCCGTCAAAAATGTATACTCCATTATTCGGCGTTGC
ACTGGCTCGCTAGGCGGCAACGGAAGTGGAGGCGCCATCTACGGAGAGCT
TACCACAGGAAGCATGCAACGGGTTGTGGACATGATGGTAACACACTGCG
CACTCGGCAGAGACAGTATTTTCATTGATATAGGGGCAGGTCTAGGGAAG
CCTAATATTCATGTGTCCCAGTACCCCGGAGTCGCAGCCTCATACGGCAT
TGAACATGAGCAAGTACGATGGCAGCTTTCCCTTCACAACCTCAGGCACC
TCCTCCAGGCCGCTGGAGCTGAAGCAAAAGACGGTGAGACAGCGGATGCG
AAGGCTGATGAAAGGGGCGCTGAGATGAGTGGGAGTGGTCGGATTAGTGA
AGAATTTGCGTCAAGCCGCATAAACCACAAAATCTTTTTCCACTACGGCG
ACGTCACCGAGGCTCGCACGCTTGATCCTTTCACACACGTATACATGTTC
GACATCGGCTTTCCACCCACATTGTTTTATGAGATTGCTGACAGATTTAA
TATCTCGCAATGTCCTTTTCTCATCTGCTATCATGGCCCGAAGCTGATCG
TGGATAGATACGGGTTTGACGTCACCTTGATTTCGCAGGTTCAGACCTCT
ATGCATGGTTCCAGTGAAGGCCACACGGCCTACTGCTATAAGCGCACCAA
AACAAAGAGGCGGTCACTAAAAGTCTCACCTGTAGATGCACTTTTCAAGG
AGGGGCTTGACATGATTCGCGAGGGTTCGTTGGAGAGCCTGCACGCTTGG
GTCAAGCAGAAGATGGACATTCACTTTACGAGCCCCCGACCCGCGCGTCG
CCGCCGCTCCACTAATCTTTTCTTGAACCAAATGTGAATGTCAGGATCTT
CTATCAAAGTGAAAGATGAACAAGGCAAGTCATTTGATCTGCCTCTTCGT
AGCAAGAACTCTGGTCGCAGGCCTCCAACCACTGGCAGCAAAAAAGCTAC
CACACCCAAGAAGGTGACCACACCCAAGCGTGCGACCCCCAAGAAGAGTA
TGTCTAAGCAGAGTCAACGTTCAAAAAGCTATAGCAAACAGGCCGGAGCG
GCAGACTTAATGTTCGCAGGCGGGAATTCCCTTGCCGATACTGAATTCTC
TTTAGCGTCCCCTACCAAGCGTACCGGTTTACCCTCCTTCCCCCCCTCCC
AAAAAAATGCTGGTTGCGCAGAGGACAAAGATGAAGAGGACAGTGGTAAT
TTGAAACTTGGACGAAAAATCTATCTTTTTTCGGACAACGACGGCGAAGC
GGACGTAGACTTCGAAAAGAAAGGCACGGGCAAGGAGGAAAATGGTGCAA
AGGACGATTGCCCGCACAGCTTATTTTCGACACCGCAGAAACCAAGAAGC
ACCAAGTCATTTGCTACACCGACCTCCATACAGTGCTCTCCTTCCGTCAA
AAATGTATACTCCATTATTCGGCGTTGCACTGGCTCGCTAGGCGGCAACG
GAAGTGGAGGCGCCATCTACGGAGAGCTTACCACAGGAAGCATGCAACGG
GTTGTGGACATGATGGTAACACACTGCGCACTCGGCAGAGACAGTATTTT
CATTGATATAGGGGCAGGTCTAGGGAAGCCTAATATTCATGTGTCCCAGT
ACCCCGGAGTCGCAGCCTCATACGGCATTGAACATGAGCAAGTACGATGG
CAGCTTTCCCTTCACAACCTCAGGCACCTCCTCCAGGCCGCTGGAGCTGA
AGCAAAAGACGGTGAGACAGCGGATGCGAAGGCTGATGAAAGGGGCGCTG
AGATGAGTGGGAGTGGTCGGATTAGTGAAGAATTTGCGTCAAGCCGCATA
AACCACAAAATCTTTTTCCACTACGGCGACGTCACCGAGGCTCGCACGCT
TGATCCTTTCACACACGTATACATGTTCGACATCGGCTTTCCACCCACAT
TGTTTTATGAGATTGCTGACAGATTTAATATCTCGCAATGTCCTTTTCTC
ATCTGCTATCATGGCCCGAAGCTGATCGTGGATAGATACGGGTTTGACGT
CACCTTGATTTCGCAGGTTCAGACCTCTATGCATGGTTCCAGTGAAGGCC
ACACGGCCTACTGCTATAAGCGCACCAAAACAAAGAGGCGGTCACTAAAA
GTCTCACCTGTAGATGCACTTTTCAAGGAGGGGCTTGACATGATTCGCGA
GGGTTCGTTGGAGAGCCTGCACGCTTGGGTCAAGCAGAAGATGGACATTC
ACTTTACGAGCCCCCGACCCGCGCGTCGCCGCCGCTCCACTAATCTTTTC
TTGAACCAAATGTGAATGTCAGGATCTTCTATCAAAGTGAAAGATGAACA
AGGCAAGTCATTTGATCTGCCTCTTCGTAGCAAGAACTCTGGTCGCAGGC
CTCCAACCACTGGCAGCAAAAAAGCTACCACACCCAAGAAGGTGACCACA
CCCAAGCGTGCGACCCCCAAGAAGAGTATGTCTAAGCAGAGTCAACGTTC
AAAAAG back to top
|