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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100023g16.3987.mrna |
| Orig protein id | gnl|cribi|Naga_100023g16.3987 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:390670..393372 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8028 ID=rna8028|Name=rna8028|organism=Nannochloropsis gaditana|type=mRNA|length=1493bp
CGCCCTCTCGTCTCTTTTGCCAGGGCGCAGTTTCCAGACGCGCGGCAAAG
GGATTGCGGAGTACTTGAATTTAAGTCGTGCTACCTCATTCCAAATGCTT
AACCTTACGTCAGCTATACCGCCCTATCTTTAATTGTTTTCATTTTATGT
TGTTTTGGTACTTTTCTTGGCTAATTTCTCAGTAAATTCTACTCGCTGCG
TCCCAGATCAGGACTAGTCATGCCCTCGATCTCAAAGGCTACGTACTTAT
GGATACTGACAATAGCAATTGCTTGCTGTTCGGCGATAAAGTGTCTAGCA
GTGCAACATGATCTTAAAGAAGCGCGCGAAAAGCTTCGCAGAGAGGAGGA
GCTGCGTAACATGGAGCGCGCGGGGCGGACGAAAGCAGAGCGGCGTCTTC
GATGTGAACTTAAAGCACTAATCAGGGGACAAACCAATGGAGGCGTGTGT
CTTAAGCCCATTGCCAGGATAAGCTCTCCCTTCAAAGGGCGCTGTGGCAC
ACCGCGCCAAGGACTGCTGGCGCCTAATGCACGAGGACAGATAAAACTTC
AGTCCGGAATTTGTAAAACATCGCTGGATCAACTAAACGCTTTCACACAC
ATGTGGGTAATCTTCCTCTTCGACCAGAACACGAATTGGACTGATGCTCT
ATGTTCTGAAAGTGAAAGCTTTACCTACACCGCCAAAATTGCACCGCCGC
GTCTTTTTGGTAAAAGAGTCGGTGTCTTCAGTACGCGCAGCCCGCATCGG
CCCAATCCGATAGGTCTGAGCGTCGTAGCCATACAGGCTGTAGACGAAAA
GGCCGGTGTCATCCATATCTCTGGTGTGGATCTGACCGACGGCACCCCGA
TTCTGGACATTAAGCCCTACATTCCCTATGACGTAGTCTTAGAGCATAAA
GTTCCCGCTTGGGTCGTATGCGAGGATTTACCAGCTTGGCAGTTACAGGT
TATGCCCGAGGCGGAGGCAGTATTAAGGGAGCTAGCAACGGAACGAGGTT
CCCCATTCTACTCGACATACGAGGAGTTGAGAGCGCTACTGCGCGATGTA
TTGTTGCAAGACGTGCGAAGTATTCACAAGGGTCGGGGGACTGTAGTTGA
GGACAAAAGCTCGTTAAAGGGGGGAGCGAATTTTTCGGAGCCTTTTACCT
GCAACATTGACGACATCGCTGTGGAGTTTGTGGCATTGCAAAATGCCATT
CAAATAATACGCTGCTCTGAGGAATATCGAAACGCGCTTGATCCGGGGCC
TGAGGATAATAAGCTTGTGATTGAGAACAAGAGAAAGTCACACGGATAAA
GAAATGTAGTTGCATGACTTTGTAGACTATTCGTGGCAAACTCTTTAAAA
AGTCAAAAGTCTCTTTTCCATGGATAAACGTAGAAAAATTGAAAAACGTG
CACAAGTGGATTTGGAGCTTTAAAGCCTCCTATTAACTTTACGTGTGGGA
ACAGTTCCTTGCGCTTCTCCAAAGCGTTATCTCACCATAATTG back to topprotein sequence of rna8028 >rna8028-protein ID=rna8028-protein|Name=rna8028|organism=Nannochloropsis gaditana|type=polypeptide|length=473bp
MSGSSIKVKDEQGKSFDLPLRSKNSGRRPPTTGSKKATTPKKVTTPKRAT
PKKSMSKQSQRSKSKQAGAADLMFAGGNSLADTEFSLASPTKRTGLPSFP
PSQKNAGCAEDKDEEDSGNLKLGRKIYLFSDNDGEADVDFEKKGTGKEEN
GAKDDCPHSLFSTPQKPRSTKSFATPTSIQCSPSVKNVYSIIRRCTGSLG
GNGSGGAIYGELTTGSMQRVVDMMVTHCALGRDSIFIDIGAGLGKPNIHV
SQYPGVAASYGIEHEQVRWQLSLHNLRHLLQAAGAEAKDGETADAKADER
GAEMSGSGRISEEFASSRINHKIFFHYGDVTEARTLDPFTHVYMFDIGFP
PTLFYEIADRFNISQCPFLICYHGPKLIVDRYGFDVTLISQVQTSMHGSS
EGHTAYCYKRTKTKRRSLKVSPVDALFKEGLDMIREGSLESLHAWVKQKM
DIHFTSPRPARRRRSTNLFLNQM back to topmRNA from alignment at KK037247.1:390670..393372- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8028 ID=rna8028|Name=rna8028|organism=Nannochloropsis gaditana|type=mRNA|length=2703bp|location=Sequence derived from alignment at KK037247.1:390670..393372- (Nannochloropsis gaditana)
CGTGGCAGAGCATGGCGGGTTAATTGTTGAAATTGAATGCAGCGGGCATT
GCTCATTTGTTCTATGAAACCCTTGTAAGGTACTTGGTTGCTACCAGGCG
GAGTTGGTCTCCACCTCGATTGTACAATGTGCTTTTCATGAACTTTACGC
ACTCGCATCAAGCGATCAACTGCATTCATGAGGTGTTTGCATCTGATCGC
TTCGATCTCTGCCGCCCCCACAAATCTGGATGAATCCGCGCACATATTCA
CAACAACCAGTTTCAACAAGCAATGTCCCCCCACATGTTTATGCAAACGT
GTATTTTGATCTGCTGAAACAGGCGAAATCATGTCAGGATCTTCTATCAA
AGTGAAAGATGAACAAGGCAAGTCATTTGATCTGCCTCTTCGTAGCAAGA
ACTCTGGTCGCAGGCCTCCAACCACTGGCAGCAAAAAAGCTACCACACCC
AAGAAGGTGACCACACCCAAGCGTGCGACCCCCAAGAAGAGTATGTCTAA
GCAGAGTCAACGTTCAAAAAGGTGAGATATCGAAGACAGATATATTCGCC
CGGCTCAGACGGCTCATCGTGCCACTCTGAAAATCAAGAGCACTGCGAAA
AGCACGCTTTGGAGTAGTCCTCTGTGATAGTATGATGGTTTCACAACTCT
TCTTAGACATCAGATTTTTTATTCGATTGGTGGAACTGATACCACATTTT
GATTTTTGACCATGCATCAATAAGATGTTCTCCCCAAACGAGTACAGAGT
ACAGTGTAACTTAATTTTGTCAGCCTACTTAGCTAGGTGTAATCTGTTGA
TGTTGGATTGCTGTCGGTCACATGTCCCAGCCCCTCACTCTGTGGACCTT
TCATTCAATTTTAAGCTATAGCAAACAGGCCGGAGCGGCAGACTTAATGT
TCGCAGGCGGGAATTCCCTTGCCGATACTGAATTCTCTTTAGCGTCCCCT
ACCAAGCGTACCGGTTTACCCTCCTTCCCCCCCTCCCAAAAAAATGCTGG
TTGCGCAGAGGACAAAGATGAAGAGGACAGTGGTAATTTGAAACTTGGAC
GAAAAATCTATCTTTTTTCGGACAACGACGGCGAAGCGGACGTAGACTTC
GAAAAGAAAGGCACGGGCAAGGAGGAAAATGGTGCAAAGGACGATTGCCC
GCACAGCTTATTTTCGACACCGCAGAAACCAAGAAGCACCAAGTCATTTG
CTACACCGACCTCCATACAGTGCTCTCCTTCCGTCAAAAATGTATACTCC
ATTATTCGGCGTTGCACTGGCTCGCTAGGCGGCAACGGAAGTGGAGGCGC
CATCTACGGAGAGCTTACCACAGGAAGCATGCAACGGGTTGTGGACATGA
TGGTAACACACTGCGCACTCGGCAGAGACAGTATTTTCATTGATATAGGG
GCAGGTCTAGGGAAGCCTAATATTCATGTGTCCCAGTACCCCGGAGTCGC
AGCCTCATACGGCATTGAACATGAGCAAGTACGATGGCAGCTTTCCCTTC
ACAACCTCAGGCACCTCCTCCAGGCCGCTGGAGCTGAAGCAAAAGACGGT
GAGACAGCGGATGCGAAGGCTGATGAAAGGGGCGCTGAGATGAGTGGGAG
TGGTCGGATTAGTGAAGAATTTGCGTCAAGCCGCATAAACCACAAAATCT
TTTTCCACTACGGCGACGTCACCGAGGCTCGCACGCTTGATCCTTTCACA
CACGTATACATGTTCGACATCGGCTTTCCACCCACATTGTTTTATGAGAT
TGCTGACAGATTTAATATCTCGCAATGTCCTTTTCTCATCTGCTATCATG
GCCCGAAGCTGATCGTGGATAGATACGGGTTTGACGTCACCTTGATTTCG
CAGGTTCAGACCTCTATGCATGGTTCCAGTGAAGGCCACACGGCCTACTG
CTATAAGCGCACCAAAACAAAGAGGCGGTCACTAAAAGTCTCACCTGTAG
ATGCACTTTTCAAGGAGGGGCTTGACATGATTCGCGAGGGTTCGTTGGAG
AGCCTGCACGCTTGGGTCAAGCAGAAGATGGACATTCACTTTACGAGCCC
CCGACCCGCGCGTCGCCGCCGCTCCACTAATCTTTTCTTGAACCAAATGT
GAACTCGAGGACAGGCCGAGTTGATGAAGAGATATGGTGAGGATCGTCTT
ATCTATACTACCTTGGAAGAACTTAGGTTCTTTGCACTGCGTGTCTTCGG
GGGCACCTCACAAGTCCTCGAATTCTACGCGCGCACGTGCATCGTCAATT
TTTCCTCGACCCCTTCGTGGTAAAGTTTGTTTATAGAAATAAGCAATGTC
CACGCATTATTTTCACTGTCCGAGGCTGTAGGTAGGATACTTACAGTCCT
GACAAAGATCACCATGTGAACTGATTTATTAAGTGTACTGCTTGTATCTG
AAAGCCATCTTTCGCCCCCAAAAACCCTGTTTGAGAGACAAAATAAAGAC
AATAAAGTATGCGAATTCGCCACCGAAGTGCCTTCAGCAATTGTCACACT
AAGAAGGAGGTTGAAAACACTGTCGTGTTTCAGCTGTCGCTCGCAAGAGG
TACATGAGGCACCGATGTATTAGGTCGCGCCAATGTGGTGATTATATTTA
CAATTATGGTGAGATAACGCTTTGGAGAAGCGCAAGGAACTGTTCCCACA
CGTAAAGTTAATAGGAGGCTTTAAAGCTCCAAATCCACTTGTGCACGTTT
TTC back to topCoding sequence (CDS) from alignment at KK037247.1:390670..393372- >rna8028 ID=rna8028|Name=rna8028|organism=Nannochloropsis gaditana|type=CDS|length=2844bp|location=Sequence derived from alignment at KK037247.1:390670..393372- (Nannochloropsis gaditana)
CAAACAGGCCGGAGCGGCAGACTTAATGTTCGCAGGCGGGAATTCCCTTG
CCGATACTGAATTCTCTTTAGCGTCCCCTACCAAGCGTACCGGTTTACCC
TCCTTCCCCCCCTCCCAAAAAAATGCTGGTTGCGCAGAGGACAAAGATGA
AGAGGACAGTGGTAATTTGAAACTTGGACGAAAAATCTATCTTTTTTCGG
ACAACGACGGCGAAGCGGACGTAGACTTCGAAAAGAAAGGCACGGGCAAG
GAGGAAAATGGTGCAAAGGACGATTGCCCGCACAGCTTATTTTCGACACC
GCAGAAACCAAGAAGCACCAAGTCATTTGCTACACCGACCTCCATACAGT
GCTCTCCTTCCGTCAAAAATGTATACTCCATTATTCGGCGTTGCACTGGC
TCGCTAGGCGGCAACGGAAGTGGAGGCGCCATCTACGGAGAGCTTACCAC
AGGAAGCATGCAACGGGTTGTGGACATGATGGTAACACACTGCGCACTCG
GCAGAGACAGTATTTTCATTGATATAGGGGCAGGTCTAGGGAAGCCTAAT
ATTCATGTGTCCCAGTACCCCGGAGTCGCAGCCTCATACGGCATTGAACA
TGAGCAAGTACGATGGCAGCTTTCCCTTCACAACCTCAGGCACCTCCTCC
AGGCCGCTGGAGCTGAAGCAAAAGACGGTGAGACAGCGGATGCGAAGGCT
GATGAAAGGGGCGCTGAGATGAGTGGGAGTGGTCGGATTAGTGAAGAATT
TGCGTCAAGCCGCATAAACCACAAAATCTTTTTCCACTACGGCGACGTCA
CCGAGGCTCGCACGCTTGATCCTTTCACACACGTATACATGTTCGACATC
GGCTTTCCACCCACATTGTTTTATGAGATTGCTGACAGATTTAATATCTC
GCAATGTCCTTTTCTCATCTGCTATCATGGCCCGAAGCTGATCGTGGATA
GATACGGGTTTGACGTCACCTTGATTTCGCAGGTTCAGACCTCTATGCAT
GGTTCCAGTGAAGGCCACACGGCCTACTGCTATAAGCGCACCAAAACAAA
GAGGCGGTCACTAAAAGTCTCACCTGTAGATGCACTTTTCAAGGAGGGGC
TTGACATGATTCGCGAGGGTTCGTTGGAGAGCCTGCACGCTTGGGTCAAG
CAGAAGATGGACATTCACTTTACGAGCCCCCGACCCGCGCGTCGCCGCCG
CTCCACTAATCTTTTCTTGAACCAAATGTGAATGTCAGGATCTTCTATCA
AAGTGAAAGATGAACAAGGCAAGTCATTTGATCTGCCTCTTCGTAGCAAG
AACTCTGGTCGCAGGCCTCCAACCACTGGCAGCAAAAAAGCTACCACACC
CAAGAAGGTGACCACACCCAAGCGTGCGACCCCCAAGAAGAGTATGTCTA
AGCAGAGTCAACGTTCAAAAAGCAAACAGGCCGGAGCGGCAGACTTAATG
TTCGCAGGCGGGAATTCCCTTGCCGATACTGAATTCTCTTTAGCGTCCCC
TACCAAGCGTACCGGTTTACCCTCCTTCCCCCCCTCCCAAAAAAATGCTG
GTTGCGCAGAGGACAAAGATGAAGAGGACAGTGGTAATTTGAAACTTGGA
CGAAAAATCTATCTTTTTTCGGACAACGACGGCGAAGCGGACGTAGACTT
CGAAAAGAAAGGCACGGGCAAGGAGGAAAATGGTGCAAAGGACGATTGCC
CGCACAGCTTATTTTCGACACCGCAGAAACCAAGAAGCACCAAGTCATTT
GCTACACCGACCTCCATACAGTGCTCTCCTTCCGTCAAAAATGTATACTC
CATTATTCGGCGTTGCACTGGCTCGCTAGGCGGCAACGGAAGTGGAGGCG
CCATCTACGGAGAGCTTACCACAGGAAGCATGCAACGGGTTGTGGACATG
ATGGTAACACACTGCGCACTCGGCAGAGACAGTATTTTCATTGATATAGG
GGCAGGTCTAGGGAAGCCTAATATTCATGTGTCCCAGTACCCCGGAGTCG
CAGCCTCATACGGCATTGAACATGAGCAAGTACGATGGCAGCTTTCCCTT
CACAACCTCAGGCACCTCCTCCAGGCCGCTGGAGCTGAAGCAAAAGACGG
TGAGACAGCGGATGCGAAGGCTGATGAAAGGGGCGCTGAGATGAGTGGGA
GTGGTCGGATTAGTGAAGAATTTGCGTCAAGCCGCATAAACCACAAAATC
TTTTTCCACTACGGCGACGTCACCGAGGCTCGCACGCTTGATCCTTTCAC
ACACGTATACATGTTCGACATCGGCTTTCCACCCACATTGTTTTATGAGA
TTGCTGACAGATTTAATATCTCGCAATGTCCTTTTCTCATCTGCTATCAT
GGCCCGAAGCTGATCGTGGATAGATACGGGTTTGACGTCACCTTGATTTC
GCAGGTTCAGACCTCTATGCATGGTTCCAGTGAAGGCCACACGGCCTACT
GCTATAAGCGCACCAAAACAAAGAGGCGGTCACTAAAAGTCTCACCTGTA
GATGCACTTTTCAAGGAGGGGCTTGACATGATTCGCGAGGGTTCGTTGGA
GAGCCTGCACGCTTGGGTCAAGCAGAAGATGGACATTCACTTTACGAGCC
CCCGACCCGCGCGTCGCCGCCGCTCCACTAATCTTTTCTTGAACCAAATG
TGAATGTCAGGATCTTCTATCAAAGTGAAAGATGAACAAGGCAAGTCATT
TGATCTGCCTCTTCGTAGCAAGAACTCTGGTCGCAGGCCTCCAACCACTG
GCAGCAAAAAAGCTACCACACCCAAGAAGGTGACCACACCCAAGCGTGCG
ACCCCCAAGAAGAGTATGTCTAAGCAGAGTCAACGTTCAAAAAG back to top
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