rna8018, rna8018 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8018
Unique Name	rna8018
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1426
Alignment location	KK037247.1:359845..362465 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100023g3.3946.mrna
Orig protein id	gnl\|cribi\|Naga_100023g3.3946
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:359845..362465 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g3	gene7764	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22630.1	cds7996	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8018	rna8018-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:359845..362465-
coding sequence from alignment at KK037247.1:359845..362465-

mRNA sequence

>rna8018 ID=rna8018|Name=rna8018|organism=Nannochloropsis gaditana|type=mRNA|length=1426bp
GCACCTAGAAGGAAAGCATCAAATCGTACGACGTTGGCTTTGTGACGCTC
GTAAACAATCTTTTTCCATTGTCCCTATCTACAGGCTCATGGTAGAAAAG
CAACGGCGTGATCGAAAACGAAAGCGAAAACGCTCCTCTCCGTTGCCATC
GACTCAGGAGGCAGAGTGGCCCCGTAAAAACCCAAAATTCGATACTCCAC
CGACCAGCGGGAGCACCGCCACTCCTGAGGGGCAAGCCTACCATGAGCAT
GGAAAATTCTCCTCTTCTTCCGCCTTGCCTCCAGCGTCAGACGCCATCGC
ACCCTCTCTTATTGGCAAGTACCACGTCGCCAGGCAACAACTCGGCCAAG
CGTCTGCCTCAAAGCGGCGGCTCTCCTCTCCCCGGCTCCCTTCCCTCTTT
CAGCCTTCAGAGCCTTCAATAAATAGAAAATTCAAGTCGACGACTTCAAC
ATTGACTGCGAGAATTCAGCCAAAGAAGACCCAAGCCTCTCTTCCAAGCT
ATCCCTTTCCCACTGATTACGCCGACCATTTCGAAAGCCCGCTGCGAGCC
TACGAAGACCTGGAACCTTTTCTGCAGTGGCTCCGCCGAGCTCTACGTAG
GGAGAAGACCTCTCTCCATATTTACGACCCCTACTTTTGTCGGGGTGCGG
TAGTAAATCTGTTGAAGAGTCTAGGCTTCCCACGGGTTACCAACAAAATG
CGGGACTTCTACGCCGACGTCGCTGCCGGCACAGTGCCGAGCTACGACGT
CTTGGTCACCAACCCCCCCTACTCGGACGACCACAAAGAGAAAATCCTAC
GCTTTTGCCTTGGCTCTGATAAGCCATGGTGTCTCCTTCTCCCCAATTAC
GTGGCGAACAAGAGCTACTATCTGGACGCTATCAGGCCCCTCCCCCAGGA
TAGGCAGCCCTTCTACCTCGTCCCCCACGCCAAGTACGAGTACCAACACC
CCGAGGGTACGGGACATATATCGTCGCCCTTTTTTTCTATATGGGTTTGC
AATCCTGGACCAATACCTAGAAGAGACATTGGCTGCGTAGTCTCGCGCTT
GCAGGCGGCGCAGCAACAGCACTCCCTCCCCTGGCGGCTGGTCCTTACGG
TTGAGGATCTGCGGAGCACGGGAGCCGCACCTTCCTGGAAGCGGCCCAGC
AACAAGCGCCGGAAGAAGATGAAAAGGCTGATGCTGACAAATGTTAAGGG
ATAGTTCTTGCGTGGTAGGGGCGAGGGAATTGCGATAGACAGTATCATAG
ACGTCAGATGTCGACCGCCAACTCATTCGATTTTTTAAAATCGCGTACCA
TGTCTCAGGAAAGAGGTTACCTTGTTTTTTTCAAAAAATATGTTTTATGC
CTCTCATCTCGTCTTGCTGTGTCCGGGTGGTGCTGTAACTCCGCTAGCAC
GATTGTCTCCCCAGACTCCTCAATTC

protein sequence of rna8018

>rna8018-protein ID=rna8018-protein|Name=rna8018|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MHSFLENCCDYSRTRSTTARPKETGCAAVAAACFYRRSNTKVRIPKKPRP
VCDFEQSTFWSFVLESVCLIPALAVAVGGVRKGCPSCPCSSPYHFWISMS

mRNA from alignment at KK037247.1:359845..362465-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8018 ID=rna8018|Name=rna8018|organism=Nannochloropsis gaditana|type=mRNA|length=2621bp|location=Sequence derived from alignment at KK037247.1:359845..362465- (Nannochloropsis gaditana)
GGCGTGAGGTCACGGCTTGCATCTCCGAGGCAGGCACGGGTGTCAAGATA
AACCTTCCATATTCTTTCGAAAAGAAATTCTCTAGACTTTAAGGTGCATT
ATGCGTCTAAGAGTATGCATATAATCTATGTCAATGTTTGTTTCGCTTAA
GTCTTTCGTCGACATTCTCGAGATTTCGTGGAGCCCTCGAGCAGAACATT
CATAGAACATACTCTACACGCTGTCACTTTTACGGGACTTGTAATAGCTC
ACATACTCCACCCCACAATAGAAAAATGCACCCCTCTTCTCACCTTTGTA
TTTATATTCATGGTACTTCACCACCTTCCTCCTCGCTATCTCACTATAGA
GTTTCTCCGATTCACTAGTACTATCCAATCATCCCAGTGCTGATGCAGTT
ACAAGCTTACTTGTAGCGTATAGTATACATATGTCAATTAATTCGTTTCT
AAGAATGAATACAATTCTCAATTGTTTCAGCCCGCAGTAGCCTCGGTACT
TTGTACTCTTGTTCCTGCATATTTTGCTCGCCTGAGGTGAGAGCAAAAGG
TGGAGAAAAACGGGCGGAAGAAGGCAGTGGCGCAAGTGAAGGGGTGAGAT
TTGGAAAAGCAGGCGAAAATGCGGCAGACTCATGACTGAGAGCCGGGGAG
AAGAGCTCTGACGTGGTGGCGGGAGAAGGGGGCCAAAGGCCGCTGCTTGT
TTGTTCTTTGCGGCGCGAGAAGGTGTTGTCAGAGGGCGACGAGGGAGGAT
AAGGAAATGAAGGGGGATGTGAACTTGAGAAGCCACTAGGAGAGGATGAA
AAGTGTAGAGACGTGGCTGTTGTGCTATTGTGGCCGTCGCAATCATCGTG
GCGGGAAAAAGAAGGCAAAAAAGGTATACTGAATGCCGGAAGCGGGGCTA
CCGACGCATTAGCACGGGAGTATCCCCTGAAGTGATCAATATACGATGGA
GCACTTTCACTGGGAAATAGAACATGAGCAGTCTTTGTGGCTGTGTTATC
ATCCGATTGAAGGTGAAGGGCTTTTTTGTTGCCTGTCGCATTATTGGCAA
AGCCGGTACAAGGTGCGCAACAAGGTTCGCCTGCTTGTACGAGGCCATGA
CGGGTACAGCGATTAAAAAATGAGGATCAAAAGCTGGAAATTAAGGAATG
TGAGTGAGACACGGAGGCAGAGCGAACCGAGACTTACCGGCTACATTGAG
TGCCTGCGCCAATGGCTTGAGATTTCGTGCCCAAGATGATTCTGTAGGTG
GACATTGCTTGAATTCGTGCTGCTGTCGGAGCAAAGAGATGGTCTCAAAG
ATAACCAAACGTCGAATCGAAGCTCCACAACTCTTATCCTCCTTGCATTC
TTGCTCGGCATGGTCCCCATATAGGGACGCACAAGACTCGTTGCCAAGTG
AGGGCAGGTTCGTCATAACACACCGGTAGCTCTCCCAGATATATTTTACC
GTCTTTTCAAAATATGTAGGCCCACCGTCCCGGCCTATGACCTCGTATTG
AGTGGCTGAGGCTCCGTACAAGGGTGCTGTAGAGGAGTAAGGAGAAGGAG
TGTTCAGAGACGACGAGCATGCAGATGAGGGCATGGAGGGAAGAGTGGGC
CCAGAAGCTGAAGAAATGTTAGAGGAAGGGAGGTCAGGCCACCAAAGCGG
AGTATTTTTGCTGGAAAGATGCGCGTTGTTGGACCCAGGCGTTGCAAAAA
GATATGCCTCCTGCTCCCCACGTACGCGCGGATCGTGAATGAAAACACAG
CGATCGCGGTAGGGGCACGCGCCTGTCATTACCCACGTCAGGCACGGGAA
AACGCGGAACTTTCCTTTCTTTGGAATGCGCCCAGACTCTTCCATCTCCT
CGAGAGTCAGCCGTCGAAGTTCCGATTGGGAGTGAGCGAAGGCACAGGAG
GCGCCGTAAGGACAGCGTGGGTAATTGCGACACATTTCTGTCTGGGGTTA
TAAAAATGAAGTGCACGTGCAGATTGCGCGTGAGAAGTAAATGTAGCTTT
GGCTTGCTGAGTAATTGAAAGCAAGCGTCCTGACATAACTGACCTTGCGA
TGGCTCTCAATAATTGACGTTGGCGAGGGAGACACGTTGGACGCTGAGCG
GCCGGCCTTACTCTTCGTAGCACTGCCCATTGCACCATTATTGGAAATTG
ATGCACTCATTTCTCGAGAATTGCTGTGACTATTCGAGGACAAGGTCGAC
GACAGCGAGGCCCAAGGAGACGGGGTGTGCAGCAGTTGCGGCGGCTTGCT
TTTATAGACGTTCCAATACAAAGGTGAGGATTCCGAAGAAGCCTCGACCC
GTTTGCGACTTTGAACAGAGCACGTTTTGGTCCTTCGTGCTAGAGAGCGT
TTGTCTGATCCCAGCTCTTGCTGTTGCGGTTGGTGGGGTCCGTAAGGGCT
GCCCTTCGTGTCCATGCTCTTCGCCCTACCATTTTTGGATTTCCATGAGT
TAATAGCACTTATCTTTTTTTCCAGAAACATAATCTGTTTCATATATAAA
TCTATAATGAATATTTTGACATGCGTGTCTACTGTTTCATTGGTTAAAGT
ACTCCGGGGGAAGGGAAGAGAAGGAGGTTCGGGAACGTAATTCCTCCTCA
ACTTCTGAGATTGTGTCCTCA

Coding sequence (CDS) from alignment at KK037247.1:359845..362465-

>rna8018 ID=rna8018|Name=rna8018|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at KK037247.1:359845..362465- (Nannochloropsis gaditana)
ATGCACTCATTTCTCGAGAATTGCTGTGACTATTCGAGGACAAGGTCGAC
GACAGCGAGGCCCAAGGAGACGGGGTGTGCAGCAGTTGCGGCGGCTTGCT
TTTATAGACGTTCCAATACAAAGGTGAGGATTCCGAAGAAGCCTCGACCC
GTTTGCGACTTTGAACAGAGCACGTTTTGGTCCTTCGTGCTAGAGAGCGT
TTGTCTGATCCCAGCTCTTGCTGTTGCGGTTGGTGGGGTCCGTAAGGGCT
GCCCTTCGTGTCCATGCTCTTCGCCCTACCATTTTTGGATTTCCATGAGT
TAA

Synonyms

Publications