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Properties
| Property Name | Value |
|---|
| Product | Pentatricopeptide repeat containing protein |
| Orig transcript id | gnl|cribi|Naga_100218g5.5295.mrna |
| Orig protein id | gnl|cribi|Naga_100218g5.5295 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:339787..342731 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8008 ID=rna8008|Name=rna8008|organism=Nannochloropsis gaditana|type=mRNA|length=1707bp
ATGTCCACTTCTGGCCAGAACGAAAGTGAGAGCCCAGAAAGTGCGCTGCG
CTGTGAAGAGGAATCTCCTCGATTCAAAGTTCAGCTAGCAGTCTATGATC
TCTCTCAGGGGATGGCCCGGCAACTTGGGCCCGCGCTCCTGGGCATGGAG
ATCGAGGCCATCTACCACACTGGTTTGGTGGTGTACGGCAAGGAGCATTT
TTTCGGCGGTGGGATCGTCTCTGTCCCGCACGAGGAATTCCTCGCGTCGT
ATCACATGCAGCCATTCCAGACCATGGAGTTGGGAGAGACGGAGGTAGGG
GAGGATCTCTTTATGGAGTTCTTGCAGGAGGTGAGCCCCCGATTTACTGC
GGAGACGTACGATCTCATGCGCTGGAACTGCAACAACTTCACCAACGAGG
CCGCGCTCTTCCTCCTGGGCACCGGCATCCCGCCACACATCCTCACCCTC
CCCGAGCGCGTCTTCTCCTCGCCCATGGGCGCGCTCCTCCGGCCCGCCAT
CGAGCAAATGCAAGGCGGCATGCGCCAGGCGGTCCCTGGCTTCCACTTCG
AGTCCTTCGAGGGCGGCGGGGAGCACCACCACGTGAACGTTCCCCCGCCT
CTGGTCCCTCCCCACACCAGCGCCCCCCCCCCCTCCCCCCTCCCAGCCGT
GCACCATCCCAACCCCTGGGCTGTCCCGGCCCCCCAACCTGCTTCCGTAG
GGGTGAACACCACGGGAAATACCAGTACCAGCACCGGCACCCAGCGTGCT
GAGCAACCGCGGCAGCAGGAGCAGAGAGGGGCGGCTCCGACGCCCGTCTT
GGACGGACAGAGCAAGCCCCTGCTCTCGGTCGACAGCCCAGCCGCCCTCA
GACAGAGCCTCAGGACCGTGGTGGCCAAGCTCAAGCTACTGGCCAGCGCC
CCCCAGGACGGGGAGGGGGAGCACGGGGCTTCTCTCCTGTCTCCCGAGGA
GGCGGCCCTCCTGGACGAGACGGAGGGCCTCGTGCTGCAGCCCCTCTCTC
CCCTCCCCCCCGCCCTCGCTCCCCTCCTTCACCGTTGCCTTCTCCCTCCG
TGGTCCGGTAGATCGGACTTCTTTGTCCTCTCCCTGCTCCGCCCCCTCTT
CCTCCGCCCCACATTCCCCACCGCCCCCCTCCTCGACCTCCTGCTCACCA
AGCTTGCTCTCACCATCGGCAGCTCCTCCCCGCCGCCCTCCCCGCTCTCC
GCTTTTGCCTCCCGCGCCTCCCTGGTCGTCGCCTTCTCCGCCCTCAGCAA
CGCCTGCGCCCACAAAGCCGGTCGCTCCCTTCTCCTCGAGCCCGAGCGCG
CCGGGCAGGCTGTGGACGTGACGGTCGCCGCGCTCCGAGACGAGCAACCG
GCGGTGCGGCAGATGGCAGCCGCCTTCCTGGCCAACCTAGCCTTGGGCGT
GGAGAAGGCGGAGGTCTGGGAGGGGGGCGGGAATCGGGAGGGCGGGGAGC
TGTCGGACCTGGTGGTGCAGATGGTCTGCGGGAGCATGGAGGGCCTGGGC
GAGGACGGGGACCAGACCTCTGTGCTGCGGCGACTCCTCTGCGCGGGCCG
GCTCGTCAGGGGGGGCAAAGGGGAGGTGGCTGCGCTGGTGCGGTCCCTGG
GGTTGGACGAGGTGCTGAGGGAGGTGGGGAGGTCGGGAGGAGCGCAGGTT
TTGGAGCTGGCGAGAGAGCTCTTGAGTTTGGTGGAGGGCGGGGGGGAAAT
GCGCTAA back to topprotein sequence of rna8008 >rna8008-protein ID=rna8008-protein|Name=rna8008|organism=Nannochloropsis gaditana|type=polypeptide|length=920bp
MRRILMVGGVCILSRGPRRLSFRPGGLGHRGVRGPPPSHGLRSARRNGVT
DAFEDVCRDGMSIYPSLSTEHEHNVHRPRSTRASPQPPPSLSSLEWLSSK
DKCRVDLGFKMLKACTGNLKVQRKMLVDLMQRCHSEGLHMGVLRTFKELC
SSGQESGIFLPQHDVPPAHKASLYGPILPAELTMALQAGMACKHWVKLER
AVVGFGASLPREEGTGRCMTETLGANWWESVAAALPEEDGWKALYPLYLE
TRKRGLGTGGEEGLRRRVLQSLEAAASMPVRGDEGGDSESDTRLVELISS
ASSSMEELLLQTLSSSSAAPRAWLELERALQGEARGKGKGEGGARKPSPA
DFDQAITRLARGGMADHANSLLRRLTLLGGLPMASSYAAVATAYARQVRR
AGARHVLQEMRGLSEKGCLAETEVAAAEEACAELARAGRDGAGGEGGRSA
PSRGEDARGGGQERCEGGERGRREAAGGERLTVAAAGGTPQASSTESRSL
RRLARAGRGPEALEALRTMQARGLVPNVWCYNYSLMACARSGLLKEAQGL
LEEMPAAERSVYSHSLLIHAAEKAGDWRAAQGVLERMRCRGLVPSVACYG
STMNALGKAGRAEEALALLRRMGTGGEPRPNAVAYTTAIDACARRSLASE
ALGLLREMEEERGLAPNAVAYACAMNACAKDRRGLEALRLLREMQAKGLA
ATEAHYGAVLNALNLSEEDDASLLALYAEAQDRRLPQHVGMHGAAIKAGD
RMGASDRVISVGRDMLRDGHRPNQRALKLLVYHAYAGGAYQEGVAFFHAR
EEAYVQNASIIKLVLRCAEKIGDVETVLLCIKEAESKKEWMCRTASRIIN
REEAEEMQGKQAREGEKREIKRRAVAELKAMLKEWTYEAGKQAQGLEEKV
KLKERRLAVFLRTTRKKGRT back to topmRNA from alignment at KK037247.1:339787..342731+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8008 ID=rna8008|Name=rna8008|organism=Nannochloropsis gaditana|type=mRNA|length=2945bp|location=Sequence derived from alignment at KK037247.1:339787..342731+ (Nannochloropsis gaditana)
TGGTCGATACCAGAAGGCTTCCATCACTCACCTTCCGATAGCCGTCATGA
TCCTGTAAAGACAGGCATTGGAGCGACATGCGGAGGATCCTGATGGTCGG
AGGTGTTTGCATTCTCTCGCGAGGACCTCGACGGCTTTCGTTTCGCCCAG
GCGGGCTCGGACATCGAGGCGTGAGggggccgcctccttctcacgGCTTG
CGCAGCGCTCGAAGGAATGGAGTCACGGACGCCTTTGAGGATGTTTGCAG
AGATGGGATGAGCAtttatccctccctttcaaccGAACATGAGCATAATG
TTCACCGACCCCGTTCCACTCGAGCCTccccgcagcctcctccgtccctg
tcctcgCTGGAATGGCTCTCATCCAAGGATAAATGTCGGGTCGATCTCGG
CTTCAAAATGCTCAAAGCATGTACAGGCAATTTGAAGGTACAACGGAAAA
TGCTCGTGGACTTGATGCAGCGTTGCCATTCCGAGGGCTTGCATATGGGG
GTGCTGCGGACGTTCAAGGAACTCTGCTCCTCCGGACAGGAAAGTGGCAT
CTTCTTGCCCCAGCACGACGTGCCGCCAGCACATAAGGCGTCGTTGTACG
GGCCCATACTACCCGCGGAGTTGACGATGGCGCTACAGGCGGGCATGGCA
TGCAAGCATTGGGTGAAACTCGAGCGCGCCGTGGTCGGCTTCGgggcgtc
cctccctcgcgaggaggggacgggtaGGTGCATGACGGAGACTCTGGGAG
CCAACTGGTGGGAAAGCGTGGCTGCGGCGCTgcccgaggaggatggctgG
AAGGCGCTGTACCCGCTGTACCTGGAGACACGGAAGCGGGGcctggggac
ggggggggaagaaggcttgaggaggagagtgctGCAGAGCCTTGAGGCAG
CGGCCTCGATGCCTGTccgaggagacgaagggggtGACAGCGAAAGCGAC
ACCCGTTTGGTCGAGCTGATTTCGTCGGCATCCAGCAGCATGgaggagct
cctcctccagaccttgtcctcctcctccgcagctcCGCGGGCCTGGCTGG
AGCTCGAGCGCGCGTTGCAAGGAGAagcgcggggaaaagggaagggggag
ggaggggcgagaaagccctcccccgcagACTTTGATCAAGCCATAACTCG
GCTGGCCCGAGGCGGGATGGCGGACCATGCAAACAGCTTGCTCCGACGCC
TCACCCTCTTGGGGGGGCTGCCTATGGCCTCCTCCTACGCCGCGGTGGCA
ACCGCCTACGCCCGACAAGTGCGTCGAGCCGGAGCTCGGCACGTGCTGCA
AGAGATGCGTGGATTGAGTGAGAAAGGATGCCTGGCCGAAacggaggtgg
cggccgcggaggaggcctgtGCGGAGTTGGCGAGGGCTGGAAGGGAcggc
gcggggggagagggagggcggtctGCGCCTTcacggggagaggacgcgcg
GGGCGGGGGTCAAGAGCGTTGTGAGGGTGGtgaacgggggaggagggagg
cggcggggggcgaaaggctgacggtggcggcggcgggagggacgccTCAG
GCCTCGTCCACTGAGAGCCGAAGCCTGAGGCGActggcgagggcggggcg
gggacccgaggcgctggaggcctTGCGGACGATGCAGGCGCGGGGCCTGG
TGCCCAACGTGTGGTGCTACAACTACTCCCTGATGGCCTGCGCGCGCAGC
GGACTCTTGAAGGAGGCGCAGGGGCTGCTTGAAGAGATGCCCGCGGCGGA
GAGGTCTGTCTATAGCCACTCTCTGCTGATCCACGCGGCCGAGAAAGCGG
GAGACTGGAGGGCGGCACAAGGCGTCTTGGAACGGATGAGGTGCAGAGGC
CTGGTGCCGTCCGTGGCATGCTACGGGTCCACAATGAACGCGCTGGgcaa
ggccgggagggcggaggaggcgcttgCCCTCTTGCGGCGCATGGGCACCG
GGGGTGAACCTCGTCCGAACGCCGTCGCCTACACCACCGCCATAGACGCC
TGTGCTCGCCGGTCCCTGGCCTCCGAGGCCCTCGGGCTCCTccgggagat
ggaggaggagcgggggcTCGCCCCCAACGCCGTGGCCTACGCCTGCGCCA
TGAATGCTTGCGCCAAGGACAGGCGGGGGCTGGAAGCCCTGCGCCTCCTG
AGAGAGATGCAGGCCAAAGGCTTAGCGGCGACAGAGGCGCACTACGGAGC
CGTCTTGAACGCGCTGAacctgagcgaggaggacgacgcctccctgctcg
ctctCTACGCGGAGGCCCAGGACCGGCGCCTGCCCCAGCATGTCGGCATG
CACGGAGCGGCCATcaaggcgggggacaggATGGGTGCTTCCGACAGGGT
CATCTCCGTGGGCCGGGATATGCTGAGGGACGGACATCGGCCTAACCAGC
GTGCCTTGAAGCTCCTAGTCTACCACGCCTACGCTGGCGGTGCCTAtcag
gagggcgtggccttcTTTCACGCGCGGGAAGAAGCATACGTCCAGAACGC
TTCTATCATAAAGCTTGTCTTGCGCTGCGCAGAAAAAATTGGAGACGTTG
AAACTGTTCTCTTGTGTATCAAAGAGGCGGAAAGCAAGAAGGAATGGATG
TGCAGGACGGCATCTCGGATCATAAATCgtgaggaggcagaagagaTGCA
AGGCAAACAAGCCCGGGAGggtgaaaaaagagaaattAAACGCCGAGCTG
TAGCAGAATTGAAGGCCATGCTTAAGGAGTGGACCTATGAAGCCGGAAAA
CAGGCTCAGGGGCTTGAGGAGAAAGTAAAGTtaaaagagaggaggctggc
TGTATTcctgaggacgacgaggaagaaggggcgaaCATGACTATGAATGC
TCGTACGTCGATGACCCTACCGATTTATGGATTTTTTCTTATGTACACTA
TGGAATGAAACGTACCGCAAACAATCAACATAAAAACGCTTTTCT back to topCoding sequence (CDS) from alignment at KK037247.1:339787..342731+ >rna8008 ID=rna8008|Name=rna8008|organism=Nannochloropsis gaditana|type=CDS|length=2763bp|location=Sequence derived from alignment at KK037247.1:339787..342731+ (Nannochloropsis gaditana)
ATGCGGAGGATCCTGATGGTCGGAGGTGTTTGCATTCTCTCGCGAGGACC
TCGACGGCTTTCGTTTCGCCCAGGCGGGCTCGGACATCGAGGCGTGAGgg
ggccgcctccttctcacgGCTTGCGCAGCGCTCGAAGGAATGGAGTCACG
GACGCCTTTGAGGATGTTTGCAGAGATGGGATGAGCAtttatccctccct
ttcaaccGAACATGAGCATAATGTTCACCGACCCCGTTCCACTCGAGCCT
ccccgcagcctcctccgtccctgtcctcgCTGGAATGGCTCTCATCCAAG
GATAAATGTCGGGTCGATCTCGGCTTCAAAATGCTCAAAGCATGTACAGG
CAATTTGAAGGTACAACGGAAAATGCTCGTGGACTTGATGCAGCGTTGCC
ATTCCGAGGGCTTGCATATGGGGGTGCTGCGGACGTTCAAGGAACTCTGC
TCCTCCGGACAGGAAAGTGGCATCTTCTTGCCCCAGCACGACGTGCCGCC
AGCACATAAGGCGTCGTTGTACGGGCCCATACTACCCGCGGAGTTGACGA
TGGCGCTACAGGCGGGCATGGCATGCAAGCATTGGGTGAAACTCGAGCGC
GCCGTGGTCGGCTTCGgggcgtccctccctcgcgaggaggggacgggtaG
GTGCATGACGGAGACTCTGGGAGCCAACTGGTGGGAAAGCGTGGCTGCGG
CGCTgcccgaggaggatggctgGAAGGCGCTGTACCCGCTGTACCTGGAG
ACACGGAAGCGGGGcctggggacggggggggaagaaggcttgaggaggag
agtgctGCAGAGCCTTGAGGCAGCGGCCTCGATGCCTGTccgaggagacg
aagggggtGACAGCGAAAGCGACACCCGTTTGGTCGAGCTGATTTCGTCG
GCATCCAGCAGCATGgaggagctcctcctccagaccttgtcctcctcctc
cgcagctcCGCGGGCCTGGCTGGAGCTCGAGCGCGCGTTGCAAGGAGAag
cgcggggaaaagggaagggggagggaggggcgagaaagccctcccccgca
gACTTTGATCAAGCCATAACTCGGCTGGCCCGAGGCGGGATGGCGGACCA
TGCAAACAGCTTGCTCCGACGCCTCACCCTCTTGGGGGGGCTGCCTATGG
CCTCCTCCTACGCCGCGGTGGCAACCGCCTACGCCCGACAAGTGCGTCGA
GCCGGAGCTCGGCACGTGCTGCAAGAGATGCGTGGATTGAGTGAGAAAGG
ATGCCTGGCCGAAacggaggtggcggccgcggaggaggcctgtGCGGAGT
TGGCGAGGGCTGGAAGGGAcggcgcggggggagagggagggcggtctGCG
CCTTcacggggagaggacgcgcgGGGCGGGGGTCAAGAGCGTTGTGAGGG
TGGtgaacgggggaggagggaggcggcggggggcgaaaggctgacggtgg
cggcggcgggagggacgccTCAGGCCTCGTCCACTGAGAGCCGAAGCCTG
AGGCGActggcgagggcggggcggggacccgaggcgctggaggcctTGCG
GACGATGCAGGCGCGGGGCCTGGTGCCCAACGTGTGGTGCTACAACTACT
CCCTGATGGCCTGCGCGCGCAGCGGACTCTTGAAGGAGGCGCAGGGGCTG
CTTGAAGAGATGCCCGCGGCGGAGAGGTCTGTCTATAGCCACTCTCTGCT
GATCCACGCGGCCGAGAAAGCGGGAGACTGGAGGGCGGCACAAGGCGTCT
TGGAACGGATGAGGTGCAGAGGCCTGGTGCCGTCCGTGGCATGCTACGGG
TCCACAATGAACGCGCTGGgcaaggccgggagggcggaggaggcgcttgC
CCTCTTGCGGCGCATGGGCACCGGGGGTGAACCTCGTCCGAACGCCGTCG
CCTACACCACCGCCATAGACGCCTGTGCTCGCCGGTCCCTGGCCTCCGAG
GCCCTCGGGCTCCTccgggagatggaggaggagcgggggcTCGCCCCCAA
CGCCGTGGCCTACGCCTGCGCCATGAATGCTTGCGCCAAGGACAGGCGGG
GGCTGGAAGCCCTGCGCCTCCTGAGAGAGATGCAGGCCAAAGGCTTAGCG
GCGACAGAGGCGCACTACGGAGCCGTCTTGAACGCGCTGAacctgagcga
ggaggacgacgcctccctgctcgctctCTACGCGGAGGCCCAGGACCGGC
GCCTGCCCCAGCATGTCGGCATGCACGGAGCGGCCATcaaggcgggggac
aggATGGGTGCTTCCGACAGGGTCATCTCCGTGGGCCGGGATATGCTGAG
GGACGGACATCGGCCTAACCAGCGTGCCTTGAAGCTCCTAGTCTACCACG
CCTACGCTGGCGGTGCCTAtcaggagggcgtggccttcTTTCACGCGCGG
GAAGAAGCATACGTCCAGAACGCTTCTATCATAAAGCTTGTCTTGCGCTG
CGCAGAAAAAATTGGAGACGTTGAAACTGTTCTCTTGTGTATCAAAGAGG
CGGAAAGCAAGAAGGAATGGATGTGCAGGACGGCATCTCGGATCATAAAT
CgtgaggaggcagaagagaTGCAAGGCAAACAAGCCCGGGAGggtgaaaa
aagagaaattAAACGCCGAGCTGTAGCAGAATTGAAGGCCATGCTTAAGG
AGTGGACCTATGAAGCCGGAAAACAGGCTCAGGGGCTTGAGGAGAAAGTA
AAGTtaaaagagaggaggctggcTGTATTcctgaggacgacgaggaagaa
ggggcgaaCATGA back to top
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