rna8007, rna8007 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8007
Unique Name	rna8007
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	966
Alignment location	KK037247.1:336314..338200 +

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Properties


Property Name	Value
Product	conserved unknown protein
Orig transcript id	gnl\|cribi\|Naga_100218g4.5292.mrna
Orig protein id	gnl\|cribi\|Naga_100218g4.5292
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:336314..338200 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100218g4	gene7753	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8007	rna8007-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22680.1	cds7985	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:336314..338200+
coding sequence from alignment at KK037247.1:336314..338200+

mRNA sequence

>rna8007 ID=rna8007|Name=rna8007|organism=Nannochloropsis gaditana|type=mRNA|length=966bp
ATGCGAATCTTCGAGCTACCTACGCTGACTCTTAGCTCACCCACCGCAAC
GTCCTGGAGACGCCGAGCGTTGCACTTGCCTTCCCACCTCCCCGTCTTCC
TCCTAGCCCTCATCCTCCTTGGCCTCTTCACGACACACGCCTTTCGTTTG
CCTAGTCATGTAGCAGGGGGCACCACATCCTCTATCAATAGAGCTGGGAG
CCTCCTCGCCCCCATCTCCTCAGTCGCCTCGGCCGGGCGACGGCGTGGGA
AGGCCCTGGCCCTGTTTTCCGGTATTGTAGAACAAATGGGTCGAGTGCAA
AAGGTGGAGATGGACAAGGACATGGTGATGTGGAGCGGAGAAACAGGAAA
GGGCATGGAACTGACAATCACGGACGCTGCCAGGGTGCTGGCGGATGCCT
ATGAGGGCTGCAGCATCGCCGTGAACGGGGTTTGTCTCACAGTCGTCACC
TACACAGGGGACACATTCACAGTAGGGTGCGCGCCTGAGACCATCCGCTG
CACCAACCTGGGCGGACTGGGGGCGGGCGAACGTGTTAATCTTGAAAGGA
GCCTGCCGGCCGACGGGCGAAACTCGGGGCACATGGTGCAGGGCCACGTG
GACGAGACGGGCGAGATCCTGGAGCGCTGGCAGGAGGGTGATTCCCTCTG
GGTGAAGGTGCGGGCCTCCCCAGCGATCCTGCCCTACATTGTGGAGAAAG
GGTACATCGCCGTGGACGGGACGAGCCTCACAGTGTGCCAGGTGGATCGG
AACGAGGGCTGGTTCACGTTCATGCTCATCGCCTACACGCAGAAACACAT
CATCGTCCCGCACAAGGCTGTGGGTGACAGGGTTAATCTGGAGGTAGACG
TGCTCGCCAAGTACGTAGAGCATTCTATGGGCGCGACCATCGAGTCTCTG
CGCGCTAACATCGAAGCATTGCAAGAAAGAGTGGCAGTATTGGAAGGGAG
AGGAGACCAGGGGTGA

protein sequence of rna8007

>rna8007-protein ID=rna8007-protein|Name=rna8007|organism=Nannochloropsis gaditana|type=polypeptide|length=568bp
MSTSGQNESESPESALRCEEESPRFKVQLAVYDLSQGMARQLGPALLGME
IEAIYHTGLVVYGKEHFFGGGIVSVPHEEFLASYHMQPFQTMELGETEVG
EDLFMEFLQEVSPRFTAETYDLMRWNCNNFTNEAALFLLGTGIPPHILTL
PERVFSSPMGALLRPAIEQMQGGMRQAVPGFHFESFEGGGEHHHVNVPPP
LVPPHTSAPPPSPLPAVHHPNPWAVPAPQPASVGVNTTGNTSTSTGTQRA
EQPRQQEQRGAAPTPVLDGQSKPLLSVDSPAALRQSLRTVVAKLKLLASA
PQDGEGEHGASLLSPEEAALLDETEGLVLQPLSPLPPALAPLLHRCLLPP
WSGRSDFFVLSLLRPLFLRPTFPTAPLLDLLLTKLALTIGSSSPPPSPLS
AFASRASLVVAFSALSNACAHKAGRSLLLEPERAGQAVDVTVAALRDEQP
AVRQMAAAFLANLALGVEKAEVWEGGGNREGGELSDLVVQMVCGSMEGLG
EDGDQTSVLRRLLCAGRLVRGGKGEVAALVRSLGLDEVLREVGRSGGAQV
LELARELLSLVEGGGEMR

mRNA from alignment at KK037247.1:336314..338200+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8007 ID=rna8007|Name=rna8007|organism=Nannochloropsis gaditana|type=mRNA|length=1887bp|location=Sequence derived from alignment at KK037247.1:336314..338200+ (Nannochloropsis gaditana)
ATGTCCACTTCTGGCCAGAACGAAAGTGAGAGCCCAGAAAGTGCGCTGCG
CTGTGAAGAGGAATCTCCTCGATTCAAAGTTCAGCTAGCAGTCTATGATC
TCTCTCAGGGGATGGCCCGGCAACTTGGGCCCGCGCTCCTGGGCATGGAG
ATCGAGGCCATCTACCACACTGGTTTGGTGGTGTACGGCAAGGAGCATTT
TTTCGGCGGTGGGATCGTCTCTGTCCCGCACGAGGAATTCCTCGCGTCGT
ATCACATGCAGCCATTCCAGACCATGGAGTTGGGAGAGacggaggtaggg
gaggatcTCTTTATGGAGTTCTTGCAGGAGGTGAGCCCCCGATTTACTGC
GGAGACGTACGGTGAGTCTGTTCGAGAGGCTAGGCCTGGCAGTGGGGAGG
AAGTACAGCCTAACGGCTCGGAGTGCGAGGAATGATGCAGTCCACCCGCA
CATCCTGCGCTCTCTCGCTACGTCTGTTCCCTGCCCTTCTCAACCGCCTG
GAaaccctttttttttttaaaaacttGCCCCATACTAAAAGATCTCATGC
GCTGGAACTGCAACAACTTCACCAACGAGGccgcgctcttcctcctgggc
ACCGGCATCCCGCCACacatcctcaccctccccgagcgcgtcttctcctc
gcccatgGGCGCGCTCCTCCGGCCCGCCATCGAGCAAATGCAAGGCGGCA
TGCGCCAGGCGGTCCCTGGCTTCCACTTCGAGTCCTtcgagggcggcggg
gagcaCCACCACGTGAACGTTCCCCCGCCTCTGGTCCCTCCCCACAccag
cgccccccccccctcccccctcccagccgtGCACCATCCCAACCCCTGGG
CTGTCCCGGCCCCCCAACCTGCTTCCGTAGGGGTGAACACCACGGGAAAT
ACCAGTACCAGCACCGGCACCCAGCGTGCTGAGCAACCgcggcagcagga
gcagagaGGGGCGGCTCCGACGCCCGTCTTGGACGGACAGAGCAAGCCCC
TGCTCTCGGTCGACAGCCCAGCCGCCCTCAGACAGAGCCTCAGGACCGTG
GTGGCCAAGCTCAAGCTACTGGCCAGCGCCCcccaggacggggaggggga
gcacggGGCTTCTCTCCTGTCTcccgaggaggcggccctcCTGGACGAGA
CGGAGGGCCTCGTGCTGcagcccctctctcccctcccccccgccctcgct
cccctccttcaccgttgccttctccctccgtgGTCCGGTAGATCGGACTT
Ctttgtcctctccctgctccgccccctcttcctccgccccacattcccca
ccgcccccctcctcgacctcctgcTCACCAAGCTTGCTCTCACCATCGgc
agctcctccccgccgccctccccgctctccgcttttgcctcccgcgcctc
cctggtcgtcgccttctccgccctcaGCAACGCCTGCGCCCACAAAGCCG
GtcgctcccttctcctcgagcCCGAGCGCGCCGGGCAGGCTGTGGACGTG
ACGGTCGCCGCGCTCCGAGACGAGCAACCGGCGGTGCGGCAGATGGCAGC
CGCCTTCCTGGCCAACCTAGCCTTgggcgtggagaaggcggaggtctggg
aggggggcgggaatcgggagggcggggagctgTCGGACCTGGTGGTGCAG
ATGGTCTGCGGGAGcatggagggcctgggcgaggacggggaccaGACCTC
TGTGCTGCGGCGACTCCTCTGCGCGGGCCGGCTCGTcagggggggcaaag
gggaggtggCTGCGCTGGTGCGGTCCCTGGGGTTGGACGAGGTGctgagg
gaggtggggaggtcgggaggagCGCAGGTTTTGGAGCTGGCGAGAGAGCT
CTTGAGtttggtggagggcgggggggaaatgcgCTAA

Coding sequence (CDS) from alignment at KK037247.1:336314..338200+

>rna8007 ID=rna8007|Name=rna8007|organism=Nannochloropsis gaditana|type=CDS|length=3414bp|location=Sequence derived from alignment at KK037247.1:336314..338200+ (Nannochloropsis gaditana)
ATGTCCACTTCTGGCCAGAACGAAAGTGAGAGCCCAGAAAGTGCGCTGCG
CTGTGAAGAGGAATCTCCTCGATTCAAAGTTCAGCTAGCAGTCTATGATC
TCTCTCAGGGGATGGCCCGGCAACTTGGGCCCGCGCTCCTGGGCATGGAG
ATCGAGGCCATCTACCACACTGGTTTGGTGGTGTACGGCAAGGAGCATTT
TTTCGGCGGTGGGATCGTCTCTGTCCCGCACGAGGAATTCCTCGCGTCGT
ATCACATGCAGCCATTCCAGACCATGGAGTTGGGAGAGacggaggtaggg
gaggatcTCTTTATGGAGTTCTTGCAGGAGGTGAGCCCCCGATTTACTGC
GGAGACGTACGATCTCATGCGCTGGAACTGCAACAACTTCACCAACGAGG
ccgcgctcttcctcctgggcACCGGCATCCCGCCACacatcctcaccctc
cccgagcgcgtcttctcctcgcccatgGGCGCGCTCCTCCGGCCCGCCAT
CGAGCAAATGCAAGGCGGCATGCGCCAGGCGGTCCCTGGCTTCCACTTCG
AGTCCTtcgagggcggcggggagcaCCACCACGTGAACGTTCCCCCGCCT
CTGGTCCCTCCCCACAccagcgccccccccccctcccccctcccagccgt
GCACCATCCCAACCCCTGGGCTGTCCCGGCCCCCCAACCTGCTTCCGTAG
GGGTGAACACCACGGGAAATACCAGTACCAGCACCGGCACCCAGCGTGCT
GAGCAACCgcggcagcaggagcagagaGGGGCGGCTCCGACGCCCGTCTT
GGACGGACAGAGCAAGCCCCTGCTCTCGGTCGACAGCCCAGCCGCCCTCA
GACAGAGCCTCAGGACCGTGGTGGCCAAGCTCAAGCTACTGGCCAGCGCC
CcccaggacggggagggggagcacggGGCTTCTCTCCTGTCTcccgagga
ggcggccctcCTGGACGAGACGGAGGGCCTCGTGCTGcagcccctctctc
ccctcccccccgccctcgctcccctccttcaccgttgccttctccctccg
tgGTCCGGTAGATCGGACTTCtttgtcctctccctgctccgccccctctt
cctccgccccacattccccaccgcccccctcctcgacctcctgcTCACCA
AGCTTGCTCTCACCATCGgcagctcctccccgccgccctccccgctctcc
gcttttgcctcccgcgcctccctggtcgtcgccttctccgccctcaGCAA
CGCCTGCGCCCACAAAGCCGGtcgctcccttctcctcgagcCCGAGCGCG
CCGGGCAGGCTGTGGACGTGACGGTCGCCGCGCTCCGAGACGAGCAACCG
GCGGTGCGGCAGATGGCAGCCGCCTTCCTGGCCAACCTAGCCTTgggcgt
ggagaaggcggaggtctgggaggggggcgggaatcgggagggcggggagc
tgTCGGACCTGGTGGTGCAGATGGTCTGCGGGAGcatggagggcctgggc
gaggacggggaccaGACCTCTGTGCTGCGGCGACTCCTCTGCGCGGGCCG
GCTCGTcagggggggcaaaggggaggtggCTGCGCTGGTGCGGTCCCTGG
GGTTGGACGAGGTGctgagggaggtggggaggtcgggaggagCGCAGGTT
TTGGAGCTGGCGAGAGAGCTCTTGAGtttggtggagggcgggggggaaat
gcgCTAAATGTCCACTTCTGGCCAGAACGAAAGTGAGAGCCCAGAAAGTG
CGCTGCGCTGTGAAGAGGAATCTCCTCGATTCAAAGTTCAGCTAGCAGTC
TATGATCTCTCTCAGGGGATGGCCCGGCAACTTGGGCCCGCGCTCCTGGG
CATGGAGATCGAGGCCATCTACCACACTGGTTTGGTGGTGTACGGCAAGG
AGCATTTTTTCGGCGGTGGGATCGTCTCTGTCCCGCACGAGGAATTCCTC
GCGTCGTATCACATGCAGCCATTCCAGACCATGGAGTTGGGAGAGacgga
ggtaggggaggatcTCTTTATGGAGTTCTTGCAGGAGGTGAGCCCCCGAT
TTACTGCGGAGACGTACGATCTCATGCGCTGGAACTGCAACAACTTCACC
AACGAGGccgcgctcttcctcctgggcACCGGCATCCCGCCACacatcct
caccctccccgagcgcgtcttctcctcgcccatgGGCGCGCTCCTCCGGC
CCGCCATCGAGCAAATGCAAGGCGGCATGCGCCAGGCGGTCCCTGGCTTC
CACTTCGAGTCCTtcgagggcggcggggagcaCCACCACGTGAACGTTCC
CCCGCCTCTGGTCCCTCCCCACAccagcgccccccccccctcccccctcc
cagccgtGCACCATCCCAACCCCTGGGCTGTCCCGGCCCCCCAACCTGCT
TCCGTAGGGGTGAACACCACGGGAAATACCAGTACCAGCACCGGCACCCA
GCGTGCTGAGCAACCgcggcagcaggagcagagaGGGGCGGCTCCGACGC
CCGTCTTGGACGGACAGAGCAAGCCCCTGCTCTCGGTCGACAGCCCAGCC
GCCCTCAGACAGAGCCTCAGGACCGTGGTGGCCAAGCTCAAGCTACTGGC
CAGCGCCCcccaggacggggagggggagcacggGGCTTCTCTCCTGTCTc
ccgaggaggcggccctcCTGGACGAGACGGAGGGCCTCGTGCTGcagccc
ctctctcccctcccccccgccctcgctcccctccttcaccgttgccttct
ccctccgtgGTCCGGTAGATCGGACTTCtttgtcctctccctgctccgcc
ccctcttcctccgccccacattccccaccgcccccctcctcgacctcctg
cTCACCAAGCTTGCTCTCACCATCGgcagctcctccccgccgccctcccc
gctctccgcttttgcctcccgcgcctccctggtcgtcgccttctccgccc
tcaGCAACGCCTGCGCCCACAAAGCCGGtcgctcccttctcctcgagcCC
GAGCGCGCCGGGCAGGCTGTGGACGTGACGGTCGCCGCGCTCCGAGACGA
GCAACCGGCGGTGCGGCAGATGGCAGCCGCCTTCCTGGCCAACCTAGCCT
Tgggcgtggagaaggcggaggtctgggaggggggcgggaatcgggagggc
ggggagctgTCGGACCTGGTGGTGCAGATGGTCTGCGGGAGcatggaggg
cctgggcgaggacggggaccaGACCTCTGTGCTGCGGCGACTCCTCTGCG
CGGGCCGGCTCGTcagggggggcaaaggggaggtggCTGCGCTGGTGCGG
TCCCTGGGGTTGGACGAGGTGctgagggaggtggggaggtcgggaggagC
GCAGGTTTTGGAGCTGGCGAGAGAGCTCTTGAGtttggtggagggcgggg
gggaaatgcgCTAA

Synonyms

Publications