rna8004, rna8004 (mRNA) Nannochloropsis gaditana

Overview
Namerna8004
Unique Namerna8004
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length615
Alignment locationKK037247.1:330742..331784 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100218g1.5294.mrna
Orig protein idgnl|cribi|Naga_100218g1.5294
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:330742..331784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100218g1gene7750Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8004rna8004-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22682.1cds7982Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8004 ID=rna8004|Name=rna8004|organism=Nannochloropsis gaditana|type=mRNA|length=615bp
CTCCTAGAGCGTCAAGTCTGTCTACGAGGCCGTGGACAGGGCGGTGCTGC
AGGACAAGCTCTCCATCGCCCTCTCCTTTGAGGGAAGGCGCAACCCCGCC
CCCCCGACCCTGAGTAAGATCCAGCGGGGAATGTTCAAGATGCAGCAGCA
GTACAACCTACCGGTCGTGCTCATCCGCCTCCGAGGCGTGGAGAAGATCT
GGGCGGCGGAGGGCATTCCCTCAGGGACGGGGCTGGTGGAGTGCCAGATG
CTCCCCCACGCCTACCGGTGGCCCTCCCTCCAGGCCTACGAGGAGGGGCT
CCGCGCCGTCTACGAACGCGGAGAGGACGACCCCCTCCCTCCCCTCCCGC
CCTCCCCCCCGCCCTCCCTCGCGACCACGGCCACGGCGGCCATGGCCAAG
GTCATGGGCATGCTCGAGAAGGAGGCGGCGCGGGTGCTGGAGGGAGAGGA
GGAGGGGAGAGGGGGTGAGGGAGGCGCTGTCGTGGCGCCGACGGAATAAA
GCTAGGGGGGGGGGCAGTAGGCCCCGGGGACGGGCGTCACGTCGCGGGCC
AGACACGCTTTTTCCAGGCGCTCACTTCAGTTTGAAATCAAAAATCGATC
GGCAAGACCACAGCC
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protein sequence of rna8004

>rna8004-protein ID=rna8004-protein|Name=rna8004|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MASASSPRAPTLGGEQGIGSEPPVEDNTLAKAASSKPPSFLGQALSLFRA
SYAVSVLLSATTVNVAAALLIHAFTRDTKKAQGRSVYAICMITSWALKFI
PWITIKVKLPPQPIDFEQFILTSNHISFMDLFFIQHTISGPSPSSNACSR
SRAACPSRSWAAAP
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mRNA from alignment at KK037247.1:330742..331784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8004 ID=rna8004|Name=rna8004|organism=Nannochloropsis gaditana|type=mRNA|length=1043bp|location=Sequence derived from alignment at KK037247.1:330742..331784- (Nannochloropsis gaditana)
ATGGCATCTGCTTCCTCCCCACGAGCTCCTACCTTGGGAGGGGAGCAAGG
TATTGGCTCCGAGCCTCCCGTTGAAGACAACACTTTGGCCAAGGCCGCCT
CCTCGAAGCCCCCGTCTTTTTTGGGACAAGCGCTGTCCCTCTTTCGAGCT
TCCTACGCAGTAAGCGTGCTCTTGAGCGCAACGACTGTAAATGTAGCGGC
AGCCTTGCTGATCCATGCTTTCACTCGGGACACTAAGAAGGCACAAGGTA
CGCAAAGGGCTTGGGAGGGGAGTTGGTAGACTCGCTCCACTCCCCAACGT
GAACAGATGCTTCTGGGAAAATATTTCCTCGGCTAAAATTGCACGGGAAA
ACAAATGTAAATGCGTATTTGCTCACACCAATGACCAGGGCGATCGGTGT
ACGCGATCTGCATGATTACCAGCTGGGCTCTCAAGTTCATTCCCTGGATC
ACTATCAAGGTCAAGCTGCCACCGCAACCGATGTAAGCTGCAGCCAATCG
AACAAGAGGGTGGATGCATGCGTTGGCGGCAACGAAGGCGCCAGTGCGAT
GGAGTGTGGCATGTTTCTCGATGACTGTCTGGCTCCTTTTAGGACTTGGG
TGACTCCATCTGCACGCACCCTTCGCTCACGCTGAATCCCCCATCCGTCT
CGGAAAATCACAACCACAGAGACTTTGAGCAATTCATCCTCACATCCAAC
CACATCTCATTCATGGATCTCTTCTTCATTCAGGTACCCTCTCCTGCTAC
CCTTCACCTCCGCCCTTCCTCGTTGTTTTCCTAGACGTCGGCATCCCCTC
GTTGAGGGCGCTTTTCCCTATTCCATTGCGCATTGCTCTTCATCCCCCGC
AATTTCCAACGTCTTCCCTTTTCCTCGTCCCTTCCCCCCCCCCAGCACAC
CATGTACCTGTCCCTCTCCCGCCAAGCCATCCAGCGCGTCCGCCTCATCT
ACTGGGAGAAGCTCGGGACCATCCCCCTCGTCAAACGCATGTTCACGCTC
ACGGGCGGCGTGCCCATCAAGATCCTGGGCAGCAGCTCCCTGA
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Coding sequence (CDS) from alignment at KK037247.1:330742..331784-

>rna8004 ID=rna8004|Name=rna8004|organism=Nannochloropsis gaditana|type=CDS|length=2475bp|location=Sequence derived from alignment at KK037247.1:330742..331784- (Nannochloropsis gaditana)
CTCGGGACCATCCCCCTCGTCAAACGCATGTTCACGCTCACGGGCGGCGT
GCCCATCAAGATCCTGGGCAGCAGCTCCCTGACACACCATAGACTTTGAG
CAATTCATCCTCACATCCAACCACATCTCATTCATGGATCTCTTCTTCAT
TCAGGGCGATCGGTGTACGCGATCTGCATGATTACCAGCTGGGCTCTCAA
GTTCATTCCCTGGATCACTATCAAGGTCAAGCTGCCACCGCAACCGATAT
GGCATCTGCTTCCTCCCCACGAGCTCCTACCTTGGGAGGGGAGCAAGGTA
TTGGCTCCGAGCCTCCCGTTGAAGACAACACTTTGGCCAAGGCCGCCTCC
TCGAAGCCCCCGTCTTTTTTGGGACAAGCGCTGTCCCTCTTTCGAGCTTC
CTACGCAGTAAGCGTGCTCTTGAGCGCAACGACTGTAAATGTAGCGGCAG
CCTTGCTGATCCATGCTTTCACTCGGGACACTAAGAAGGCACAAGCTCGG
GACCATCCCCCTCGTCAAACGCATGTTCACGCTCACGGGCGGCGTGCCCA
TCAAGATCCTGGGCAGCAGCTCCCTGACACACCATAGACTTTGAGCAATT
CATCCTCACATCCAACCACATCTCATTCATGGATCTCTTCTTCATTCAGG
GCGATCGGTGTACGCGATCTGCATGATTACCAGCTGGGCTCTCAAGTTCA
TTCCCTGGATCACTATCAAGGTCAAGCTGCCACCGCAACCGATATGGCAT
CTGCTTCCTCCCCACGAGCTCCTACCTTGGGAGGGGAGCAAGGTATTGGC
TCCGAGCCTCCCGTTGAAGACAACACTTTGGCCAAGGCCGCCTCCTCGAA
GCCCCCGTCTTTTTTGGGACAAGCGCTGTCCCTCTTTCGAGCTTCCTACG
CAGTAAGCGTGCTCTTGAGCGCAACGACTGTAAATGTAGCGGCAGCCTTG
CTGATCCATGCTTTCACTCGGGACACTAAGAAGGCACAAGCTCGGGACCA
TCCCCCTCGTCAAACGCATGTTCACGCTCACGGGCGGCGTGCCCATCAAG
ATCCTGGGCAGCAGCTCCCTGACACACCATAGACTTTGAGCAATTCATCC
TCACATCCAACCACATCTCATTCATGGATCTCTTCTTCATTCAGGGCGAT
CGGTGTACGCGATCTGCATGATTACCAGCTGGGCTCTCAAGTTCATTCCC
TGGATCACTATCAAGGTCAAGCTGCCACCGCAACCGATATGGCATCTGCT
TCCTCCCCACGAGCTCCTACCTTGGGAGGGGAGCAAGGTATTGGCTCCGA
GCCTCCCGTTGAAGACAACACTTTGGCCAAGGCCGCCTCCTCGAAGCCCC
CGTCTTTTTTGGGACAAGCGCTGTCCCTCTTTCGAGCTTCCTACGCAGTA
AGCGTGCTCTTGAGCGCAACGACTGTAAATGTAGCGGCAGCCTTGCTGAT
CCATGCTTTCACTCGGGACACTAAGAAGGCACAAGCTCGGGACCATCCCC
CTCGTCAAACGCATGTTCACGCTCACGGGCGGCGTGCCCATCAAGATCCT
GGGCAGCAGCTCCCTGACACACCATAGACTTTGAGCAATTCATCCTCACA
TCCAACCACATCTCATTCATGGATCTCTTCTTCATTCAGGGCGATCGGTG
TACGCGATCTGCATGATTACCAGCTGGGCTCTCAAGTTCATTCCCTGGAT
CACTATCAAGGTCAAGCTGCCACCGCAACCGATATGGCATCTGCTTCCTC
CCCACGAGCTCCTACCTTGGGAGGGGAGCAAGGTATTGGCTCCGAGCCTC
CCGTTGAAGACAACACTTTGGCCAAGGCCGCCTCCTCGAAGCCCCCGTCT
TTTTTGGGACAAGCGCTGTCCCTCTTTCGAGCTTCCTACGCAGTAAGCGT
GCTCTTGAGCGCAACGACTGTAAATGTAGCGGCAGCCTTGCTGATCCATG
CTTTCACTCGGGACACTAAGAAGGCACAAGCTCGGGACCATCCCCCTCGT
CAAACGCATGTTCACGCTCACGGGCGGCGTGCCCATCAAGATCCTGGGCA
GCAGCTCCCTGACACACCATAGACTTTGAGCAATTCATCCTCACATCCAA
CCACATCTCATTCATGGATCTCTTCTTCATTCAGGGCGATCGGTGTACGC
GATCTGCATGATTACCAGCTGGGCTCTCAAGTTCATTCCCTGGATCACTA
TCAAGGTCAAGCTGCCACCGCAACCGATATGGCATCTGCTTCCTCCCCAC
GAGCTCCTACCTTGGGAGGGGAGCAAGGTATTGGCTCCGAGCCTCCCGTT
GAAGACAACACTTTGGCCAAGGCCGCCTCCTCGAAGCCCCCGTCTTTTTT
GGGACAAGCGCTGTCCCTCTTTCGAGCTTCCTACGCAGTAAGCGTGCTCT
TGAGCGCAACGACTGTAAATGTAGCGGCAGCCTTGCTGATCCATGCTTTC
ACTCGGGACACTAAGAAGGCACAAG
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Synonyms
Publications