rna8003, rna8003 (mRNA) Nannochloropsis gaditana

Overview
Namerna8003
Unique Namerna8003
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length867
Alignment locationKK037247.1:329628..330475 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102225g1.7664.mrna
Orig protein idgnl|cribi|Naga_102225g1.7664
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:329628..330475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102225g1gene7749Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8003rna8003-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22692.1cds7981Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8003 ID=rna8003|Name=rna8003|organism=Nannochloropsis gaditana|type=mRNA|length=867bp
ATGGAGCGGAAAGCCTGGGCATTCATATGCCTGATTTGGTGCATCCTTAT
CGCTTCCACGACCTCTTTTGACTTTTTCCAGTCTCGTACTACTAGCGGCG
GCAGCTTCTTTGGCGGCAGCGGAGGCTTCCCAGGGGGTCCTGGAGGGTTT
TATCGCCCGGACAGCGGCGGAGATGGAGAGAACGGCGGAGATAGCGACCA
AGGGGGCTACTACGCGACGCTGGGCATCCCAAAAACGAGCACCCTGAGCG
AGGTCAAGCGCGCCTACCGGCGTCTCGTCGTGCGCCTGCACCCCGACAAA
GGCGGGGACGAGAAGGCGTTCAAGGCCTTGCAGGAGGCCTACGAGGTCCT
CTCAGACCCCGCAAAGAGGAGGCTCTACGATGCCTACGGCAAAGCAGGCG
TGGAGATGGGGAGCGGGGCCCAGGGAGGGAGGCCAGAGGACGTGTTCTCC
TCCTTCTTCGGATCGGGCCGGGCGCGCGGCTTTGGCGGAACGGGCGGCCC
CCGCCGGTCTCCCAACCTGTACCTGCAGGTGGAGCTGACCCTGGAAGAGC
TCTTCAAAGGCGCGACGCGAAAGGTGCGCCTGAACCGACAGAAGGTAGTG
GACCGGCGGCTGGTGGTGGAGCCCAAGGTCTTGGAGGCCGCCTTCGAGCG
GGGCATGCAGGACGGGGCGCGTCTGGTGCTGGCGGGGGAGGCGGAGGGGC
TGGGGAATGCGGCCCCGGGAGACATCATCATCCAGGTTCGCGAGCTCAAG
CATCCCACCTTCGTCCGCCGGAACGCCGACCTGCTCTGCGAGATGAAAGT
GACTCTTACGGAGGCCTTGACGGGCTTTGAGCGACCCTTACGCCACCTGG
ACGTCTGGCCAACCTGA
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protein sequence of rna8003

>rna8003-protein ID=rna8003-protein|Name=rna8003|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MFKMQQQYNLPVVLIRLRGVEKIWAAEGIPSGTGLVECQMLPHAYRWPSL
QAYEEGLRAVYERGEDDPLPPLPPSPPPSLATTATAAMAKVMGMLEKEAA
RVLEGEEEGRGGEGGAVVAPTE
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mRNA from alignment at KK037247.1:329628..330475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8003 ID=rna8003|Name=rna8003|organism=Nannochloropsis gaditana|type=mRNA|length=848bp|location=Sequence derived from alignment at KK037247.1:329628..330475- (Nannochloropsis gaditana)
CTCCTAGAGCGTCAAGTCTGTCTACGAGGCCGTGGACAGGGCGGTGCTGC
AGGACAAGCTCTCCATCGCCCTCTCCTTTGAGGGAAGGCGCAACCCCGCC
CCCCCGACCCTGAGTAAGATCCAGCGGGGAATGTTCAAGATGCAGCAGCA
GTACAACCTACCGGTCGTGCTCATCCGCCTCCGAGGTAACCTCTTCCGCT
CGCACTCCCTTCCTCTTCCCTCCCTCCCTCCTTCCCTCCCTTCCTCCCTA
CCTCCCTCCCTCCTCCGTGCCCGCCCTCCCACCCTTCCTTCGTTCGCCAC
GAGTCCCGTGAGTGTTGCCAGGCCCCCGACGGCGTTGGTTGCTCGGGCCG
ACTCATTCTCCCTCCCCCGCTCTCCGCTTTCCTTCCTCCCTCCTTCCCTT
CCTCCCTCTACTCCCCAGGCGTGGAGAAGATCTGGGCGGCGGAGGGCATT
CCCTCAGGGACGGGGCTGGTGGAGTGCCAGATGCTCCCCCACGCCTACCG
GTGGCCCTCCCTCCAGGCCTACGAGGAGGGGCTCCGCGCCGTCTACGAAC
GCGGAGAGGACGACCCCCTCCCTCCCCTCCCGCCCTCCCCCCCGCCCTCC
CTCGCGACCACGGCCACGGCGGCCATGGCCAAGGTCATGGGCATGCTCGA
GAAGGAGGCGGCGCGGGTGCTGGAGGGAGAGGAGGAGGGGAGAGGGGGTG
AGGGAGGCGCTGTCGTGGCGCCGACGGAATAAAGCTAGGGGGGGGGGCAG
TAGGCCCCGGGGACGGGCGTCACGTCGCGGGCCAGACACGCTTTTTCCAG
GCGCTCACTTCAGTTTGAAATCAAAAATCGATCGGCAAGACCACAGCC
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Coding sequence (CDS) from alignment at KK037247.1:329628..330475-

>rna8003 ID=rna8003|Name=rna8003|organism=Nannochloropsis gaditana|type=CDS|length=738bp|location=Sequence derived from alignment at KK037247.1:329628..330475- (Nannochloropsis gaditana)
GCGTGGAGAAGATCTGGGCGGCGGAGGGCATTCCCTCAGGGACGGGGCTG
GTGGAGTGCCAGATGCTCCCCCACGCCTACCGGTGGCCCTCCCTCCAGGC
CTACGAGGAGGGGCTCCGCGCCGTCTACGAACGCGGAGAGGACGACCCCC
TCCCTCCCCTCCCGCCCTCCCCCCCGCCCTCCCTCGCGACCACGGCCACG
GCGGCCATGGCCAAGGTCATGGGCATGCTCGAGAAGGAGGCGGCGCGGGT
GCTGGAGGGAGAGGAGGAGGGGAGAGGGGGTGAGGGAGGCGCTGTCGTGG
CGCCGACGGAATAAATGTTCAAGATGCAGCAGCAGTACAACCTACCGGTC
GTGCTCATCCGCCTCCGAGGCGTGGAGAAGATCTGGGCGGCGGAGGGCAT
TCCCTCAGGGACGGGGCTGGTGGAGTGCCAGATGCTCCCCCACGCCTACC
GGTGGCCCTCCCTCCAGGCCTACGAGGAGGGGCTCCGCGCCGTCTACGAA
CGCGGAGAGGACGACCCCCTCCCTCCCCTCCCGCCCTCCCCCCCGCCCTC
CCTCGCGACCACGGCCACGGCGGCCATGGCCAAGGTCATGGGCATGCTCG
AGAAGGAGGCGGCGCGGGTGCTGGAGGGAGAGGAGGAGGGGAGAGGGGGT
GAGGGAGGCGCTGTCGTGGCGCCGACGGAATAAATGTTCAAGATGCAGCA
GCAGTACAACCTACCGGTCGTGCTCATCCGCCTCCGAG
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Synonyms
Publications