rna7998, rna7998 (mRNA) Nannochloropsis gaditana

Overview
Namerna7998
Unique Namerna7998
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1149
Alignment locationKK037247.1:318289..318669 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100340g6.5994.mrna
Orig protein idgnl|cribi|Naga_100340g6.5994
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:318289..318669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100340g6gene7744Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7998rna7998-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22698.1cds7976Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7998 ID=rna7998|Name=rna7998|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp
AAGGCATCGTGGGGTGGCGATATAAGTCATTTACGCAATGGTATCTTCAT
GTCTGTAATGTATGCTCGAGTGCATTTGGTTTGAGGGAAAAATTGTCGAG
CCGGCGTGCTCGGAGAGAGGGAGGAGCGTCCCCCCCACTTCAACAATACC
TGGTAATAAGACACATTTACACCGCACACTGAAGGCGTTTGGCGGTTCGG
CTGTGAGGATTTAATTTTCGACGATGGTAAACAAAGTTCTTTTTGGACAG
AAAGGATATTTGGTCTGGCCACCGTTCTTTTTTTGAGGATCAATCTCACC
AAGTACGCGCATTATTTGTATCGTTCTGACTCAAGGAGAAGTTCTTATTG
TAATGTATGATTTGAAATCTCCGCATGAGCACTCCTCTTGTAAGGATTTC
GCATTCCATGAAGCTACTTACATCAGGATGCACGTTTTAAACCCAACACA
TGCAGCAGCATCGTGGAGGGCTGGCGTGCCATTGGCCCCAATCACAATGA
CTGCTCCTCTCCATTCTCAGACTCAGCACCTGACCGTGATGAGCGACGCC
GAAGTTTGCGACGTGGTTGAGGACACATTTACTTTTCGATTCGATAAATT
GTACGACTTCGTGCGCGGGCACGTGGTTGACACCTTGCGGAAGCCGCGGT
TAGTATTGGCTGTAGGATGGCATGAGGAGACCAGCACGCCTACAGGGGAG
TTGGACGTACAATTTCAAGCCATATCCGTGGCGAGAATTTCGTTCCGCCC
TCATTGGACGGCACCATACTTAGATGTCAGCATGCAGACTCCGGCGTCCC
GAGTCTTTCAATCTGCATTTGCCTCCCTTGCAACTACCGCCGCCTTGTCT
ACCGCCCTCCGCAACATTCAAGCCCTACCGGAGTCATTGGAATACACTAA
GGGTGCAGGTGATGTATTCAATGGGACCTTTGACAGAATACGCCGCGGTT
TGTGGGACCTGATAGACTACGGAAAGCCCCTACTCTTTGCCGGAGCTCCG
TTGCCGCTTGTGCTATTTGTAACAAGAAAGGACCAAGGATCTTGTTCCAA
TGAGAGAAAATAAAAATGAATTGGGAGCAAGCTGTTGAATACGTGTATCA
TGGAAAGTTTGGAACAAAAATAATTGTGCAGGATGATGGAGTATTAAGT
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protein sequence of rna7998

>rna7998-protein ID=rna7998-protein|Name=rna7998|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MVKDQKGPSFLRFGGKKSENNAGARHRTGLSLSCSHATSKLPGVSPGRQE
PVKDVRAVPPASATNDSGSDRHSPSITHCRHSSAGSSITGVLATSRAEVM
QTGSMGACSAPATSSSASVSPSPSPR
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mRNA from alignment at KK037247.1:318289..318669+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7998 ID=rna7998|Name=rna7998|organism=Nannochloropsis gaditana|type=mRNA|length=381bp|location=Sequence derived from alignment at KK037247.1:318289..318669+ (Nannochloropsis gaditana)
ATGGTCAAAGACCAGAAAGGCCCATCGTTCCTTCGCTTTGGTGGGAAAAA
GTCAGAAAACAATGCTGGTGCTCGTCATCGTACCGGACTGTCATTGTCTT
GCTCCCATGCCACTTCTAAGCTGCCAGGGGTCTCCCCAGGTCGGCAGGAG
CCCGTAAAGGACGTGAGGGCAGTCCCTCCAGCGAGCGCCACAAACGACAG
CGGCTCTGACCGGCACTCTCCCAGCATCACCCACTGTCGGCATAGCAGTG
CCGGCAGCAGCATCACGGGTGTCTTGGCAACAAGCCGGGCGGAAGTGATG
CAGACTGGCTCGATGGGCGCCTGCTCGGCCCCGGCCACCTCTTCGAgcgc
ctccgtctccccctccccttccccaagGTAA
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Coding sequence (CDS) from alignment at KK037247.1:318289..318669+

>rna7998 ID=rna7998|Name=rna7998|organism=Nannochloropsis gaditana|type=CDS|length=381bp|location=Sequence derived from alignment at KK037247.1:318289..318669+ (Nannochloropsis gaditana)
ATGGTCAAAGACCAGAAAGGCCCATCGTTCCTTCGCTTTGGTGGGAAAAA
GTCAGAAAACAATGCTGGTGCTCGTCATCGTACCGGACTGTCATTGTCTT
GCTCCCATGCCACTTCTAAGCTGCCAGGGGTCTCCCCAGGTCGGCAGGAG
CCCGTAAAGGACGTGAGGGCAGTCCCTCCAGCGAGCGCCACAAACGACAG
CGGCTCTGACCGGCACTCTCCCAGCATCACCCACTGTCGGCATAGCAGTG
CCGGCAGCAGCATCACGGGTGTCTTGGCAACAAGCCGGGCGGAAGTGATG
CAGACTGGCTCGATGGGCGCCTGCTCGGCCCCGGCCACCTCTTCGAgcgc
ctccgtctccccctccccttccccaagGTAA
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Synonyms
Publications