|
|
Properties
| Property Name | Value |
|---|
| Product | conserved unknown protein |
| Orig transcript id | gnl|cribi|Naga_100566g1.6426.mrna |
| Orig protein id | gnl|cribi|Naga_100566g1.6426 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:311199..313826 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7994 ID=rna7994|Name=rna7994|organism=Nannochloropsis gaditana|type=mRNA|length=757bp
AGGCCTGGAACCTTCTCGCAGGCCGACGTCGAAGCCGCAGCCCGCGCTGC
CAACATTTACGACTTCATCCAGTCCCTCCCCGACCGCTTCGAGACCGTCA
TCGGGGAGGGCAGCGTCGGGCTGTCCGGGGGGGAAAAGCAGCGAGTGGCG
ATAGCCAGGGCCCTCATGCGGAAACCGGAGGTCCTTCTGCTCGACGAGCC
CAGCTCAGCGCTTGACCAGAGTTCCCAGGCGATCGTCCAGGCGGCGTTGG
AAAGGGCAGCGGAGGGGAGAACGACCCTCATCATTGCTCATCGACTCAGC
ACCATTGAGTCCTGCGACAGCATCATTGTTCTCAAGAGCGGAGCCGTGGT
CGAGCGAGGCACCCATGCGGAGCTCCTGGCCAAGGAGGGGGTGTATGCGG
CCTTTCGCGCCCAGCAGACATTCATGCAGCCCCCAAAAGACGTGGAGCCA
CGGAGAGCCCAGGCAGTGAAAGAGCCGGAAAGGATCTGAAACCCTCGCTA
TCGGGGATGGGAAGGATTTGTAAAGGAGTGCAGCAGGAGGCAGCCCTGGT
CCTGGCTGAGGCCGTCTTGTACAGGTGAAAAGGTAGTCAGGGAGCACGAG
ACTAATGGATCGCGCATAGAGACTGGTGACGGCCGATATCCGTTACGCGG
CCAGGCCACAAATATAAGGCGTCAGAAATCCAAATCCAAGAATCTTGCAT
CAGATCTAAGAGGGCTGTAAAGGACAGTCTGTTCGTAAAACCTGCATATC
ATTGCTG back to topprotein sequence of rna7994 >rna7994-protein ID=rna7994-protein|Name=rna7994|organism=Nannochloropsis gaditana|type=polypeptide|length=601bp
MKHPPFLSLRLAIVFQFLVNFRSDVVAFHLPGGNLYRVGGRTYTCPVTAP
QLPSLDTLYFARSVPRTINIVTSTSTDSSKNNAFGTAPPAPTSLPYPRLG
DVVLFPGKWVGDTGIGQIRFLQLTGDGRGGKEWIADLTPFKDVGEDLYRA
EKGARARTFPVSALQPLSHFYIGSSDAFKVPHKEEAGGEGMGRRREPVRM
APGYRTEGFSLAPAKVDAEAMEAARSKYRDLKRRILTDTAAFGGLATVAV
GLNAGVEDAGIFLAGVAGSVLYLVLLTQRADAMGQAGGEGGGLSKARGGS
LVGRSVGATRFLVPVVLIAALAYKNLYMEGGGGGAGLAGGRLFNYVPQDE
FWSATLGFLSYRVPMLGREEGEVDGRDYHFVEDFAFQVMREQGRFLTAYQ
EEAGEGRAWFGLRPSDVVDVMRKEGKVSVLALDAFAADKLLALGEARLIG
VWVTLNTVDQLRERYGGEEGGKEEEVEAAVSRATVAIEHALMGGGGEEGL
LRAHHLRRQGQGGDAPVAARLCGLRPQPVRALPPLPSRRLLPVPASPRRR
LSRYWDGRWLGGGELGPGRRRSPENRARNKKRERALRALFELANFSFFHS
R back to topmRNA from alignment at KK037247.1:311199..313826+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7994 ID=rna7994|Name=rna7994|organism=Nannochloropsis gaditana|type=mRNA|length=2628bp|location=Sequence derived from alignment at KK037247.1:311199..313826+ (Nannochloropsis gaditana)
CCATCTTAGGGTCTGTGGTTGTCAAGGAGCATGCCAGGGTGTATGTGATA
TGGTGGATATGGTTGCATCGTGCGCCAGTTAATAGATTACACACATCACA
GCAACATCGCGAGACCGAGGTCCTTCAACCCTGCCGACAACCTCAACATC
AGcacgccgcctccctccgctgcAGTGCCTCGACCCCCTGTACTTATTTC
CTCCGACGATCATGAAGCATCCACCCTTTCTGTCATTACGATTGGCTATA
GTTTTCCAGTTTCTAGTAAATTTTAGATCTGACGTGGTAGCTTTCCACCT
TCCCGGTGGAAACCTCTATCGCGTCGGTGGGAGGACATACACATGTCCCG
TGACTGCTCCgcagcttccctccttggacACGCTGTATTTCGCGAGAAGC
GTCCCAAGAACAATCAACATAGTCACCTCGACCTCGACCGACAGGTATGT
CTCGAATGGCACGCCCATGCTGAAGTTGCCCCTGTGTCcttgttttcttc
cttcgccccATTAAGATTTCAGCTTACCGCTTCTCTCTCGAGGCCTTCTA
CTCGTGAGCTTTGTAGCGGTCGACATCCCGCATCCGCCTCATGTCGTGAA
ACTTCCATCCCTGCGTCTTCTCCAGCTTCTTGGCCATatcatctccctct
tcatctgTTCCTGTCTGAAGTCCACCGCTACATCATATCAAGCGCCTACA
GCGGTCTCACCTCCCAAAATACTCGCACATGATTCTCCCCACAGCAGCAA
GAACAATGCCTTTGGCActgctccccccgcccccacctccctcccctacc
ccaGGCTCGGGGACGTCGTGCTCTTCCCCGGGAAGTGGGTGGGCGACACG
GGCATCGGGCAGATCCGATTCCTGCAGCTGACAGGGGacgggcgaggcgg
gaaggaatggaTCGCCGACTTGACCCCCTTCAAGGACGTCGGGGAAGACC
TGTACCGTGCAGAGAAGGGGGCGCGGGCCCGGACCTTCCCCGTGAGcgcc
ctccagcccctctcGCATTTCTACATCGGCAGCTCGGACGCCTTCAAAGT
GCCGcacaaagaggaagcgggaggggaagggatggggcggaggcgggagc
cCGTGAGGATGGCACCCGGCTACAGGACGGAGGGCTTCTCCCTGGCGCCC
GCCAAGGTGGACGCAGAGGCtatggaggcggcgaggagcaAGTACCGGGA
CTTGAAGCGGCGGATCCTGACGGACACGGCCGCCTTCGGAGGCCTCGCGA
CCGTCGCCGTGGGCCTGAACgccggcgtggaggacgcaggGATCTTtctg
gcgggcgtggcgggctCCGTGCTGtacctggtcctcctcaCGCAGAGAGC
GGACGCCatggggcaggcggggggggaggggggagggctcagcaaggccc
ggggggggagtctGGTGGGGAGGAGCGTGGGCGCGACCCGATTCTTGGTC
CCCGTCGTCTTGATCGCGGCCCTGGCCTACAAGAACCTGtacatggaggg
ggggggagggggcgcgggcctggcggggggCCGGCTCTTCAACTACGTTC
CCCAGGACGAGTTCTGGTCGGCCACCTTGGGCTTCCTCTCGTACCGAGTG
CCGATgctggggcgggaggtgggggagatgctggcgcggaggagcgaggg
gcagcgggggcaggcgggtACCCTGGGGGGGTCGGTGAGGGCGGGCATGG
CCCTGGTCGACAggctgcagggagggagggagggagggagggagggaggg
agggagggagagacggcggccgcggaggccgggggggcgcTTACAGAaag
gaggtgacggtgctggtggtgagTGGGCCGGACGGGATGGGAAAGCGCGG
TCTGGCGCGCAGACTGGTTGAAAGCGATCCGTTACAAAGATACGCCGAGC
CCGTGTGGGTGACCACGCGGGcaccgaaggagggggaggtggacgggCGG
GACTACCATTTCGTGGAGGACTTCGCCTTCCAAGTCATGCGGGAGCAAGG
GCGCTTCTTGACGGCCTatcaggaggaagcgggggagggcagggcctgGT
TCGGACTTCGGCCGAGCGACGTGGTGGACGtgatgagaaaggaagggaag
gtgtcGGTGCTGGCGCTGGACGCCTTCGCTGCAGACAAGCTGCTGGCCTT
GGGGGAGGCCCGCCTGATCGGCGTCTGGGTGACTCTCAACACCGTGGACC
AGCTGCGGGAGCGgtatggaggggaggagggagggaaggaggaggaggtg
gaggcggcggtgtCGAGGGCGACTGTGGCCATAGAGCACGCCCTcatggg
gggaggcggggaggaggggcttctACGAGCACACCATCTACGAcgacaag
ggcaaggaggagacgctccGGTCGCTGCGAGACTTTGCGGACTTCGCCCT
CAGCCTGTGagggctcttcctcccctcccttctcggcGACTGCTCCCGGT
CCCAGCCTCGCCACGCCGGAGGCTCTCGCGATATTGGGATGGGAGatggt
tgggggggggggaactcggccctgggagaaggcggagtcCCGAGAATCGG
GCAAGGAACAAGAAGCGTGAGCGGGCACTCAGGGCTTTGTTTGAATTAGC
GaatttctctttttttcacTCTCGCTGA back to topCoding sequence (CDS) from alignment at KK037247.1:311199..313826+ >rna7994 ID=rna7994|Name=rna7994|organism=Nannochloropsis gaditana|type=CDS|length=5418bp|location=Sequence derived from alignment at KK037247.1:311199..313826+ (Nannochloropsis gaditana)
ATGAAGCATCCACCCTTTCTGTCATTACGATTGGCTATAGTTTTCCAGTT
TCTAGTAAATTTTAGATCTGACGTGGTAGCTTTCCACCTTCCCGGTGGAA
ACCTCTATCGCGTCGGTGGGAGGACATACACATGTCCCGTGACTGCTCCg
cagcttccctccttggacACGCTGTATTTCGCGAGAAGCGTCCCAAGAAC
AATCAACATAGTCACCTCGACCTCGACCGACAGCAGCAAGAACAATGCCT
TTGGCActgctccccccgcccccacctccctcccctaccccaGGCTCGGG
GACGTCGTGCTCTTCCCCGGGAAGTGGGTGGGCGACACGGGCATCGGGCA
GATCCGATTCCTGCAGCTGACAGGGGacgggcgaggcgggaaggaatgga
TCGCCGACTTGACCCCCTTCAAGGACGTCGGGGAAGACCTGTACCGTGCA
GAGAAGGGGGCGCGGGCCCGGACCTTCCCCGTGAGcgccctccagcccct
ctcGCATTTCTACATCGGCAGCTCGGACGCCTTCAAAGTGCCGcacaaag
aggaagcgggaggggaagggatggggcggaggcgggagccCGTGAGGATG
GCACCCGGCTACAGGACGGAGGGCTTCTCCCTGGCGCCCGCCAAGGTGGA
CGCAGAGGCtatggaggcggcgaggagcaAGTACCGGGACTTGAAGCGGC
GGATCCTGACGGACACGGCCGCCTTCGGAGGCCTCGCGACCGTCGCCGTG
GGCCTGAACgccggcgtggaggacgcaggGATCTTtctggcgggcgtggc
gggctCCGTGCTGtacctggtcctcctcaCGCAGAGAGCGGACGCCatgg
ggcaggcggggggggaggggggagggctcagcaaggcccggggggggagt
ctGGTGGGGAGGAGCGTGGGCGCGACCCGATTCTTGGTCCCCGTCGTCTT
GATCGCGGCCCTGGCCTACAAGAACCTGtacatggagggggggggagggg
gcgcgggcctggcggggggCCGGCTCTTCAACTACGTTCCCCAGGACGAG
TTCTGGTCGGCCACCTTGGGCTTCCTCTCGTACCGAGTGCCGATgctggg
gcgggaggagggggaggtggacgggCGGGACTACCATTTCGTGGAGGACT
TCGCCTTCCAAGTCATGCGGGAGCAAGGGCGCTTCTTGACGGCCTatcag
gaggaagcgggggagggcagggcctgGTTCGGACTTCGGCCGAGCGACGT
GGTGGACGtgatgagaaaggaagggaaggtgtcGGTGCTGGCGCTGGACG
CCTTCGCTGCAGACAAGCTGCTGGCCTTGGGGGAGGCCCGCCTGATCGGC
GTCTGGGTGACTCTCAACACCGTGGACCAGCTGCGGGAGCGgtatggagg
ggaggagggagggaaggaggaggaggtggaggcggcggtgtCGAGGGCGA
CTGTGGCCATAGAGCACGCCCTcatggggggaggcggggaggaggggctt
ctACGAGCACACCATCTACGAcgacaagggcaaggaggagacgctccGGT
CGCTGCGAGACTTTGCGGACTTCGCCCTCAGCCTGTGagggctcttcctc
ccctcccttctcggcGACTGCTCCCGGTCCCAGCCTCGCCACGCCGGAGG
CTCTCGCGATATTGGGATGGGAGatggttgggggggggggaactcggccc
tgggagaaggcggagtcCCGAGAATCGGGCAAGGAACAAGAAGCGTGAGC
GGGCACTCAGGGCTTTGTTTGAATTAGCGaatttctctttttttcacTCT
CGCTGAATGAAGCATCCACCCTTTCTGTCATTACGATTGGCTATAGTTTT
CCAGTTTCTAGTAAATTTTAGATCTGACGTGGTAGCTTTCCACCTTCCCG
GTGGAAACCTCTATCGCGTCGGTGGGAGGACATACACATGTCCCGTGACT
GCTCCgcagcttccctccttggacACGCTGTATTTCGCGAGAAGCGTCCC
AAGAACAATCAACATAGTCACCTCGACCTCGACCGACAGCAGCAAGAACA
ATGCCTTTGGCActgctccccccgcccccacctccctcccctaccccaGG
CTCGGGGACGTCGTGCTCTTCCCCGGGAAGTGGGTGGGCGACACGGGCAT
CGGGCAGATCCGATTCCTGCAGCTGACAGGGGacgggcgaggcgggaagg
aatggaTCGCCGACTTGACCCCCTTCAAGGACGTCGGGGAAGACCTGTAC
CGTGCAGAGAAGGGGGCGCGGGCCCGGACCTTCCCCGTGAGcgccctcca
gcccctctcGCATTTCTACATCGGCAGCTCGGACGCCTTCAAAGTGCCGc
acaaagaggaagcgggaggggaagggatggggcggaggcgggagccCGTG
AGGATGGCACCCGGCTACAGGACGGAGGGCTTCTCCCTGGCGCCCGCCAA
GGTGGACGCAGAGGCtatggaggcggcgaggagcaAGTACCGGGACTTGA
AGCGGCGGATCCTGACGGACACGGCCGCCTTCGGAGGCCTCGCGACCGTC
GCCGTGGGCCTGAACgccggcgtggaggacgcaggGATCTTtctggcggg
cgtggcgggctCCGTGCTGtacctggtcctcctcaCGCAGAGAGCGGACG
CCatggggcaggcggggggggaggggggagggctcagcaaggcccggggg
gggagtctGGTGGGGAGGAGCGTGGGCGCGACCCGATTCTTGGTCCCCGT
CGTCTTGATCGCGGCCCTGGCCTACAAGAACCTGtacatggagggggggg
gagggggcgcgggcctggcggggggCCGGCTCTTCAACTACGTTCCCCAG
GACGAGTTCTGGTCGGCCACCTTGGGCTTCCTCTCGTACCGAGTGCCGAT
gctggggcgggaggagggggaggtggacgggCGGGACTACCATTTCGTGG
AGGACTTCGCCTTCCAAGTCATGCGGGAGCAAGGGCGCTTCTTGACGGCC
TatcaggaggaagcgggggagggcagggcctgGTTCGGACTTCGGCCGAG
CGACGTGGTGGACGtgatgagaaaggaagggaaggtgtcGGTGCTGGCGC
TGGACGCCTTCGCTGCAGACAAGCTGCTGGCCTTGGGGGAGGCCCGCCTG
ATCGGCGTCTGGGTGACTCTCAACACCGTGGACCAGCTGCGGGAGCGgta
tggaggggaggagggagggaaggaggaggaggtggaggcggcggtgtCGA
GGGCGACTGTGGCCATAGAGCACGCCCTcatggggggaggcggggaggag
gggcttctACGAGCACACCATCTACGAcgacaagggcaaggaggagacgc
tccGGTCGCTGCGAGACTTTGCGGACTTCGCCCTCAGCCTGTGagggctc
ttcctcccctcccttctcggcGACTGCTCCCGGTCCCAGCCTCGCCACGC
CGGAGGCTCTCGCGATATTGGGATGGGAGatggttgggggggggggaact
cggccctgggagaaggcggagtcCCGAGAATCGGGCAAGGAACAAGAAGC
GTGAGCGGGCACTCAGGGCTTTGTTTGAATTAGCGaatttctcttttttt
cacTCTCGCTGAATGAAGCATCCACCCTTTCTGTCATTACGATTGGCTAT
AGTTTTCCAGTTTCTAGTAAATTTTAGATCTGACGTGGTAGCTTTCCACC
TTCCCGGTGGAAACCTCTATCGCGTCGGTGGGAGGACATACACATGTCCC
GTGACTGCTCCgcagcttccctccttggacACGCTGTATTTCGCGAGAAG
CGTCCCAAGAACAATCAACATAGTCACCTCGACCTCGACCGACAGCAGCA
AGAACAATGCCTTTGGCActgctccccccgcccccacctccctcccctac
cccaGGCTCGGGGACGTCGTGCTCTTCCCCGGGAAGTGGGTGGGCGACAC
GGGCATCGGGCAGATCCGATTCCTGCAGCTGACAGGGGacgggcgaggcg
ggaaggaatggaTCGCCGACTTGACCCCCTTCAAGGACGTCGGGGAAGAC
CTGTACCGTGCAGAGAAGGGGGCGCGGGCCCGGACCTTCCCCGTGAGcgc
cctccagcccctctcGCATTTCTACATCGGCAGCTCGGACGCCTTCAAAG
TGCCGcacaaagaggaagcgggaggggaagggatggggcggaggcgggag
ccCGTGAGGATGGCACCCGGCTACAGGACGGAGGGCTTCTCCCTGGCGCC
CGCCAAGGTGGACGCAGAGGCtatggaggcggcgaggagcaAGTACCGGG
ACTTGAAGCGGCGGATCCTGACGGACACGGCCGCCTTCGGAGGCCTCGCG
ACCGTCGCCGTGGGCCTGAACgccggcgtggaggacgcaggGATCTTtct
ggcgggcgtggcgggctCCGTGCTGtacctggtcctcctcaCGCAGAGAG
CGGACGCCatggggcaggcggggggggaggggggagggctcagcaaggcc
cggggggggagtctGGTGGGGAGGAGCGTGGGCGCGACCCGATTCTTGGT
CCCCGTCGTCTTGATCGCGGCCCTGGCCTACAAGAACCTGtacatggagg
gggggggagggggcgcgggcctggcggggggCCGGCTCTTCAACTACGTT
CCCCAGGACGAGTTCTGGTCGGCCACCTTGGGCTTCCTCTCGTACCGAGT
GCCGATgctggggcgggaggagggggaggtggacgggCGGGACTACCATT
TCGTGGAGGACTTCGCCTTCCAAGTCATGCGGGAGCAAGGGCGCTTCTTG
ACGGCCTatcaggaggaagcgggggagggcagggcctgGTTCGGACTTCG
GCCGAGCGACGTGGTGGACGtgatgagaaaggaagggaaggtgtcGGTGC
TGGCGCTGGACGCCTTCGCTGCAGACAAGCTGCTGGCCTTGGGGGAGGCC
CGCCTGATCGGCGTCTGGGTGACTCTCAACACCGTGGACCAGCTGCGGGA
GCGgtatggaggggaggagggagggaaggaggaggaggtggaggcggcgg
tgtCGAGGGCGACTGTGGCCATAGAGCACGCCCTcatggggggaggcggg
gaggaggggcttctACGAGCACACCATCTACGAcgacaagggcaaggagg
agacgctccGGTCGCTGCGAGACTTTGCGGACTTCGCCCTCAGCCTGTGa
gggctcttcctcccctcccttctcggcGACTGCTCCCGGTCCCAGCCTCG
CCACGCCGGAGGCTCTCGCGATATTGGGATGGGAGatggttggggggggg
ggaactcggccctgggagaaggcggagtcCCGAGAATCGGGCAAGGAACA
AGAAGCGTGAGCGGGCACTCAGGGCTTTGTTTGAATTAGCGaatttctct
ttttttcacTCTCGCTGA back to top
|