rna7990, rna7990 (mRNA) Nannochloropsis gaditana

Overview
Namerna7990
Unique Namerna7990
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length336
Alignment locationKK037247.1:297589..298513 +

Link to JBrowse

Properties
Property NameValue
Productpeptidase m24 family protein
Orig transcript idgnl|cribi|Naga_101457g1.228.mrna
Orig protein idgnl|cribi|Naga_101457g1.228
Genexpnpep1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:297589..298513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
xpnpep1gene7737Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7990rna7990-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22705.1cds7968Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7990 ID=rna7990|Name=rna7990|organism=Nannochloropsis gaditana|type=mRNA|length=336bp
ATGGTCGTGACCTCGGATTTCTACGTGGCTATCACCGGGCGCGACACCTC
CCTCTACCTGCACACCCTCTGGCTCTCCCTCCTCATCGTCCTAGCCGTGG
TCGTCTGCAAGACCTTCAAGACCCTCTCTGTGGAGCTCCTGGCGCTCCAA
TGCCACCGCCCAACCCTCCCGGGCACGAGCAGTGAGACCTCCCTCCCTCC
CTCCCTCCCTCCCTCCGCCCCCGTCGACAACCCCGATCAACGCCTGACGT
CCGACCTGGAGATTTTTGGCGCGAAACTGGCGGAGCTGATCGGGCAGACC
CTGGCTGTCCCGGCCTTGGTCTTGTACTGTGAGTAG
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protein sequence of rna7990

>rna7990-protein ID=rna7990-protein|Name=rna7990|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MPPSAFSSSPLPPVAGSSALLAALRQGMEAQGLDALVVPSEDAHLSEYVP
ARDRRREYVTGFSGSAGTAVVTPEHALLWTDGRYFLQASQELGPDWVLMK
ALEKGVPTVEAWLASHLHQTKV
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mRNA from alignment at KK037247.1:297589..298513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7990 ID=rna7990|Name=rna7990|organism=Nannochloropsis gaditana|type=mRNA|length=925bp|location=Sequence derived from alignment at KK037247.1:297589..298513+ (Nannochloropsis gaditana)
GGAGCGATCTGTCCATGGATTTACTGTCGTTGTCATCCTTGAGTGTCGTA
ATCAAAAGTTTTTCAGAACACGGCTCTGATAGAGAACCCCCTCATAGGGG
CTAACCTCTTCATGAAGGGACGCCCAAAACTCACGCACGCACGCCCCTCA
ATCCGCAGCCAAAAAAAACAACTTGAAAGGGCATGCCTCCTTCagcgttt
tcctcctcgccactgCCGCCAGTGgccggctcctccgcccttttgGCTGC
TTTACGCCAGGGCATGGAGGCGCAGGGCCTGGATGCTCTCGTTGTTCCCT
CCGAAGGTCAGTGCCAGCGCTGGGGGGACCCCAAGAACTCCTCGACACCA
GGCATCGATATCTTACCTTTTCTTAATGCTGTAATACGCCTGATCATGCG
TTTGTTTTGGCATtcattccctttcctttccctccctcgccctgcctGTC
TCCTCACCTCTCAGACGCCCACCTGTCTGAGTACGTCCCTGCACGCGACC
GGCGGCGAGAGTACGTGACAGGATTCAGCGGAAGCGCGGGCACGGCGGTC
GTCACACCCGAACATGCGTTACTGTGGACGGACGGGCGATATTTTCTTCA
GgtacgaaggagggaggaggcgaaggaagggggggagaggcgccgCGTGC
GACCTGACGCCCTCGAAAAGGGTCAGCTGTCAGCGAATCCGTGCAAAAGC
CAAGTCGATCTTCCCTGCTGGGAGGCTTGCGGTGTCTGCTCTGTCTCTGT
TATTGCTCGCAAGCACCCCATCTCACCGGCTCTCCCtgtctgtctcctcc
ctcctccccgtccgcagGCGTCACAGGAGCTGGGGCCCGACTGGGTGTTG
ATGAAGGCGCTCGAGAAGGGCGTGCCCACGGTGGAGGCCTGGCTGGCcag
ccacctccaccagACGAAGGTttga
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Coding sequence (CDS) from alignment at KK037247.1:297589..298513+

>rna7990 ID=rna7990|Name=rna7990|organism=Nannochloropsis gaditana|type=CDS|length=1107bp|location=Sequence derived from alignment at KK037247.1:297589..298513+ (Nannochloropsis gaditana)
ATGCCTCCTTCagcgttttcctcctcgccactgCCGCCAGTGgccggctc
ctccgcccttttgGCTGCTTTACGCCAGGGCATGGAGGCGCAGGGCCTGG
ATGCTCTCGTTGTTCCCTCCGAAGACGCCCACCTGTCTGAGTACGTCCCT
GCACGCGACCGGCGGCGAGAGTACGTGACAGGATTCAGCGGAAGCGCGGG
CACGGCGGTCGTCACACCCGAACATGCGTTACTGTGGACGGACGGGCGAT
ATTTTCTTCAGGCGTCACAGGAGCTGGGGCCCGACTGGGTGTTGATGAAG
GCGCTCGAGAAGGGCGTGCCCACGGTGGAGGCCTGGCTGGCcagccacct
ccaccagACGAAGGTttgaATGCCTCCTTCagcgttttcctcctcgccac
tgCCGCCAGTGgccggctcctccgcccttttgGCTGCTTTACGCCAGGGC
ATGGAGGCGCAGGGCCTGGATGCTCTCGTTGTTCCCTCCGAAGACGCCCA
CCTGTCTGAGTACGTCCCTGCACGCGACCGGCGGCGAGAGTACGTGACAG
GATTCAGCGGAAGCGCGGGCACGGCGGTCGTCACACCCGAACATGCGTTA
CTGTGGACGGACGGGCGATATTTTCTTCAGGCGTCACAGGAGCTGGGGCC
CGACTGGGTGTTGATGAAGGCGCTCGAGAAGGGCGTGCCCACGGTGGAGG
CCTGGCTGGCcagccacctccaccagACGAAGGTttgaATGCCTCCTTCa
gcgttttcctcctcgccactgCCGCCAGTGgccggctcctccgccctttt
gGCTGCTTTACGCCAGGGCATGGAGGCGCAGGGCCTGGATGCTCTCGTTG
TTCCCTCCGAAGACGCCCACCTGTCTGAGTACGTCCCTGCACGCGACCGG
CGGCGAGAGTACGTGACAGGATTCAGCGGAAGCGCGGGCACGGCGGTCGT
CACACCCGAACATGCGTTACTGTGGACGGACGGGCGATATTTTCTTCAGG
CGTCACAGGAGCTGGGGCCCGACTGGGTGTTGATGAAGGCGCTCGAGAAG
GGCGTGCCCACGGTGGAGGCCTGGCTGGCcagccacctccaccagACGAA
GGTttga
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Synonyms
Publications