rna7986, rna7986 (mRNA) Nannochloropsis gaditana

Overview
Namerna7986
Unique Namerna7986
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length555
Alignment locationKK037247.1:291078..292985 +

Link to JBrowse

Properties
Property NameValue
Productmajor facilitator superfamily domain-containing protein 1 isoform 1
Orig transcript idgnl|cribi|Naga_100515g3.1462.mrna
Orig protein idgnl|cribi|Naga_100515g3.1462
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:291078..292985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100515g3gene7733Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7986rna7986-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22710.1cds7964Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7986 ID=rna7986|Name=rna7986|organism=Nannochloropsis gaditana|type=mRNA|length=555bp
ATGTCCCGCGTCACCCCACTTCGACACGCCGCCTACCGGTCTGTCGTCAG
GCTATTGCTCCATTACGGCGCCGATCCCACCTTAGCCGACGCGCAAGGGG
GTTTGCCTGTGCAGGTCGCCTGCTTTCTGCGAAACCGCCACAAACGGCCG
ACTGTTACGCGGCTCTTGCTCGAGGGCCACCGAGGGTATCTCCTCAGGAA
GGCGAGGCAGCTCCTCCTCCTTGCGTGCGAGAATGCGGGTAAAGGGGGTG
AAGGGGTGAGTGGGGGGTGTAAGGGGGCGCCCGAGGAGGGGATGCCGGGA
AGGCGGGGGTGGCCGAGAGTAGTGCTGAGGGCACACCTTGGAATGGGGGA
GAGAGGTGAGGACAGGAAGGTGTTTTTCAGGCGCGAAGAAGGACGGGAAG
AAGAAAAAGAGATGGAGGGATGCGGCGATCTTGGGGAGGAGAGGGGGAGG
GAGGAGACAAAGTATGAATGTGAAATAGTGGAGGAGATATGCGCGTACAT
GCTGTTGAAAATAAACCAGGATTTGTTCATGGAGCTGGCTGACTTTTTCA
CATGA
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protein sequence of rna7986

>rna7986-protein ID=rna7986-protein|Name=rna7986|organism=Nannochloropsis gaditana|type=polypeptide|length=635bp
MQENGGPGNVNDSVNNDVPERVNHPLDLAGHKSELGPSCEGNGVEHKAER
RDDKALQRSRTLPHRMLSRQTSSQSFMVRQLESLRAPSLSRVALSGAPSD
IPDVGLMLPHVDLDVKTEEAKMLCIPGTRWHMLLVVLACSIAFGPSFSRS
ILSAVSADVMLAFGMTKATYGALSGLPAIPNIFASPIGGAIVDRLGADKS
CVLYSGITVLGSICLSTAVYIRSVHLLAAAQILLGIGRGTLVIAQKVFLK
LAADPKETSFLFALSFSISHAGMFMAFFLSPLIEDNSPYGYLASVWASTG
ITVLSFLCTIPLLGKLRHILPLLRAEEQESFLADEEEEEEDGKAGEAEER
GGGPTASSRWDRREEGSWVELVGAGTLQRVMNASRRQGRGASMSDLANHP
IPSPSCWQTAYQYFEDLISIPFFLLVLCIVCYYMAFVPLETFAVDYLKSD
LGYKASTASLGASLVMLGSVFLGPFFGLRVDIELWKKGVPGQWTRRLCPP
GATQAWAMFLTGTGILTVTLAPTKWPWGFALVSIGYAMACAALWSSVPEV
VKARSLGLAFGVIHAVMDVMIMVTEVVIGRLLDTGHTYESAVWPMLVGFT
TAGFLATLALMHVLMTQVKLNAVIAAMTDNEDWDE
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mRNA from alignment at KK037247.1:291078..292985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7986 ID=rna7986|Name=rna7986|organism=Nannochloropsis gaditana|type=mRNA|length=1908bp|location=Sequence derived from alignment at KK037247.1:291078..292985+ (Nannochloropsis gaditana)
ATGCAGGAGAATGGTGGGCCTGGAAATGTGAATGATAGTGTGAATAATGA
CGTTCCGGAGCGTGTTAACCATCCATTGGACTTGGCTGGGCACAAAAGCG
AGTTGGGCCCTAGCTGTGAGGGCAATGGCGTTGAGCATAAGGCCGAACGA
CGGGATGACAAAGCTCTACAAAGAAGCCGAACTCTTCCCCACAGAATGTT
GTCTCGGCAGACTTCCAGCCAATCATTTATGGTGCGACAGCTGGAAAGTC
TTCGCGCTCCGTCCTTGAGCCGCGTCGCCTTATCCGGTGCCCCCAGTGAC
ATCCCGGACGTGGGACTGATGCTGCCTCACGTGGATTTGGACGTGAAAAC
CGAGGAGGCCAAGATGCTGTGTATTCCAGGAACGAGATGGCATATGCTTC
TGGTGGTCCTTGCTTGCAGTATTGCCTTTggaccctccttttctcgctCC
ATCTTGAGCGCAGTGAGTGCGGACGTGATGCTTGCCTTTGGCATGACGAA
AGCCACCTACGGAGCTCTGTCAGGTCTACCGGCTATTCCCAACATCTTTG
CCTCCCCCATTGGTGGTGCCATTGTCGACCGGTTGGGCGCGGATAAGAGT
TGCGTCCTCTATTCGGGTATCACCGTCTTGGGCAGCATATGCCTGTCGAC
GGCCGTCTACATCCGTTCCGTCCATCTGCTCGCCGCCGCCCAGATCCTTC
TCGGGATCGGGAGGGGCACGCTGGTCATTGCTCAGAAGGTGTTTCTCAAG
CTGGCGGCGGACCCGAAGGagacctccttcctcttcgccctctctttctc
catctcccacgCTGGAATGTTCAtggccttcttcctctcccccctgaTCG
AGGACAACAGCCCCTATGGGTACCTGGCGAGCGTGTGGGCCAGCACAGGT
ATCACCGtgctctcctttctctgcaCGATCCCCCTCCTGGGCAAGCTCAG
AcacatcctccccttgctgAGGGCCGAGGAGCAGGAGTCTTTcttggcgg
acgaggaggaggaggaggaggacgggaaagctggagaagcagaggaaagg
gggggcggcccGACGGCGTCTTCGAGGTGGGAcaggcgagaggaaggctC
GTGGGTGGAGCTGGTCGGCGCGGGCACCTTGCAACGGGTCATGAACGCGA
GCAGAAGACAGGGCAGGGGCGCCTCCATGAGCGATCTGGCCAACCACccg
atcccctccccctcctgctggcAGACGGCCTATCAGTACTTCGAGGACCT
GAtctccatccccttcttcctcctggtcctctGCATCGTCTGCTACTACA
TGGCCTTCGTCCCCCTGGAGACCTTCGCCGTCGACTACCTCAAGTCCGAC
CTGGGCTACAAggcctccactgcctcgctCGGGGCCTCCCTGGTCATGCT
TggctccgtcttcctcgggcCTTTCTTCGGCCTCCGCGTGGACATCGAGC
TctggaagaagggcgtgCCCGGGCAATGGACGCGCCGTTTGTGTCCGCCG
GGGGCGACGCAGGCCTGGGCTATGTTCCTGACCGGGACGGGCATCCTCAC
CGTCACGCTCGCTCCCACCAAGTGGCCGTGGGGCTTCGCCTTGGTCAGCA
TCGGGTATGCCATGGCTTGCGCTGCGCTCTGGTCGTCGGTGccggaggtg
gtgaaagCCCGGTCCCTGGGGCTGGCCTTCGGGGTGATCCACGCCGTGAT
GGACGTCATGATCATGGTCACCGAGGTGGTGATAGGCCGGCTCTTGGATA
CCGGGCACACCTATGAATCCGCCGTGTGGCCCATGTTGGTCGGCTTCACG
ACGGCGGGTTTCCTCGCCACGCTCGCGCTGATGCACGTGTTGATGACGCA
AGTCAAATTGAACGCGGTCATTGCGGCTATGACGGATAACGAAGATTGGG
ACGAATAG
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Coding sequence (CDS) from alignment at KK037247.1:291078..292985+

>rna7986 ID=rna7986|Name=rna7986|organism=Nannochloropsis gaditana|type=CDS|length=1908bp|location=Sequence derived from alignment at KK037247.1:291078..292985+ (Nannochloropsis gaditana)
ATGCAGGAGAATGGTGGGCCTGGAAATGTGAATGATAGTGTGAATAATGA
CGTTCCGGAGCGTGTTAACCATCCATTGGACTTGGCTGGGCACAAAAGCG
AGTTGGGCCCTAGCTGTGAGGGCAATGGCGTTGAGCATAAGGCCGAACGA
CGGGATGACAAAGCTCTACAAAGAAGCCGAACTCTTCCCCACAGAATGTT
GTCTCGGCAGACTTCCAGCCAATCATTTATGGTGCGACAGCTGGAAAGTC
TTCGCGCTCCGTCCTTGAGCCGCGTCGCCTTATCCGGTGCCCCCAGTGAC
ATCCCGGACGTGGGACTGATGCTGCCTCACGTGGATTTGGACGTGAAAAC
CGAGGAGGCCAAGATGCTGTGTATTCCAGGAACGAGATGGCATATGCTTC
TGGTGGTCCTTGCTTGCAGTATTGCCTTTggaccctccttttctcgctCC
ATCTTGAGCGCAGTGAGTGCGGACGTGATGCTTGCCTTTGGCATGACGAA
AGCCACCTACGGAGCTCTGTCAGGTCTACCGGCTATTCCCAACATCTTTG
CCTCCCCCATTGGTGGTGCCATTGTCGACCGGTTGGGCGCGGATAAGAGT
TGCGTCCTCTATTCGGGTATCACCGTCTTGGGCAGCATATGCCTGTCGAC
GGCCGTCTACATCCGTTCCGTCCATCTGCTCGCCGCCGCCCAGATCCTTC
TCGGGATCGGGAGGGGCACGCTGGTCATTGCTCAGAAGGTGTTTCTCAAG
CTGGCGGCGGACCCGAAGGagacctccttcctcttcgccctctctttctc
catctcccacgCTGGAATGTTCAtggccttcttcctctcccccctgaTCG
AGGACAACAGCCCCTATGGGTACCTGGCGAGCGTGTGGGCCAGCACAGGT
ATCACCGtgctctcctttctctgcaCGATCCCCCTCCTGGGCAAGCTCAG
AcacatcctccccttgctgAGGGCCGAGGAGCAGGAGTCTTTcttggcgg
acgaggaggaggaggaggaggacgggaaagctggagaagcagaggaaagg
gggggcggcccGACGGCGTCTTCGAGGTGGGAcaggcgagaggaaggctC
GTGGGTGGAGCTGGTCGGCGCGGGCACCTTGCAACGGGTCATGAACGCGA
GCAGAAGACAGGGCAGGGGCGCCTCCATGAGCGATCTGGCCAACCACccg
atcccctccccctcctgctggcAGACGGCCTATCAGTACTTCGAGGACCT
GAtctccatccccttcttcctcctggtcctctGCATCGTCTGCTACTACA
TGGCCTTCGTCCCCCTGGAGACCTTCGCCGTCGACTACCTCAAGTCCGAC
CTGGGCTACAAggcctccactgcctcgctCGGGGCCTCCCTGGTCATGCT
TggctccgtcttcctcgggcCTTTCTTCGGCCTCCGCGTGGACATCGAGC
TctggaagaagggcgtgCCCGGGCAATGGACGCGCCGTTTGTGTCCGCCG
GGGGCGACGCAGGCCTGGGCTATGTTCCTGACCGGGACGGGCATCCTCAC
CGTCACGCTCGCTCCCACCAAGTGGCCGTGGGGCTTCGCCTTGGTCAGCA
TCGGGTATGCCATGGCTTGCGCTGCGCTCTGGTCGTCGGTGccggaggtg
gtgaaagCCCGGTCCCTGGGGCTGGCCTTCGGGGTGATCCACGCCGTGAT
GGACGTCATGATCATGGTCACCGAGGTGGTGATAGGCCGGCTCTTGGATA
CCGGGCACACCTATGAATCCGCCGTGTGGCCCATGTTGGTCGGCTTCACG
ACGGCGGGTTTCCTCGCCACGCTCGCGCTGATGCACGTGTTGATGACGCA
AGTCAAATTGAACGCGGTCATTGCGGCTATGACGGATAACGAAGATTGGG
ACGAATAG
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Synonyms
Publications