rna7980, rna7980 (mRNA) Nannochloropsis gaditana

Overview
Namerna7980
Unique Namerna7980
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1286
Alignment locationKK037247.1:277261..278107 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100641g1.3003.mrna
Orig protein idgnl|cribi|Naga_100641g1.3003
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:277261..278107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100641g1gene7727Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7980rna7980-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22716.1cds7958Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7980 ID=rna7980|Name=rna7980|organism=Nannochloropsis gaditana|type=mRNA|length=1286bp
AGCCCGCCCCATTGGGAAAGTGTGTGTATCAGCTCATTGAAGACTCACAC
GCCGTGCATTTCGCAAGCGCACTCATTGAGTTGAGACACAATCGTTGAGG
TCTCCCTCGGTGCACCTAGCAAGAAGCCGAGACGGGCCAGATTCTCACCT
GTGCGACATGATGTCGGGTGCGCACCGTGGCCACAGAAGTCTCACGCCAT
CGTTATCTCCTTCTTCCCTGTTGTATTCTGGTGCCTACCTCTGGCGTGGA
CGTCGGTGGAGAGAGGGAAGGAGGTGTAAGCGTCAACCCCGTCCTCAACT
CCCTTCAGCCCCTTTATCCGAGTCGCTCATGCCTTTCTCTTTTCTTTTCA
CGCTAATGCACACGGTCGTGTGGCATCCATCACTAGCAGTAGCTGCCACA
CAAGTCTTAGTGCGAGAAGTAGCCGCAGCAGCTGCAGCAGGGTGGTTGGT
CATGGGTGAAAGCAGTGTCCTCAAAGGCCGGCATTACTTGCAGCTTTTCA
TCCTGGCCCTTCTCTTTATGTTTGCCATATTCACCCGGAAGAGCATCTGG
ATCTACTATACCGTCTTCATCATTTTTGCAGGGATGATCTTCATCGTCGA
CATCCTTTTTCAAGATTTTCAATTTGTCTATGACCCCGACCCAAACAATT
GGCGTCGAAAGACAGACCCCCAAGATTAAATTATCTTCATGAGGCGTGTG
AGGAATTGCAGAGGGTAGAGAAGCAACAAATGTGATCAAGAGGCAGTTTG
GGGGCTTACGTGAAGCAAGAATAAAACTTTTTCACCGATGGAGAGGAAAT
GTGTATTTTGACGGAATGGCGATCGAGAAGGTCGACGAAGCAATGGGAAA
AGGGGCTGCGCTTCACGGCCCTTTCTTTTCGGTGCAAGGGCACACCATGG
TACAGATAAGGGTTAATTCTATTTTGTCCTGGACCGGAATTGGTTGCAGA
ATGAAAGATGACGGGTACAAATTCCTAGGCCCTGCGCTTCCGGCTATTGA
AAAAGTGAAAAGAAAATAATTGGACGCGTGCTTTACTCGTTTGGCGCGAT
GAGGATTCAGAGTCGACGGAAAAAGCATGTAGGCTCTCACGAGTATGTTC
GACCTCGCACAGTGTATGCATGCATGCCTTTTGTTGTAAAATACTCGCCA
AATCCACGACGACGCTTCACGATCGTAATAGTCCGATGTGTACTTCTGGT
TTCTAGCCCCCGACGCGCTCCATTTCCCAATTACACAAATCAAGGGATGC
CAAGCCAAAAAAAGAAGAACGAAGCCACGCGCTTGC
back to top

protein sequence of rna7980

>rna7980-protein ID=rna7980-protein|Name=rna7980|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MPGLKSRRLAGGFHSIIPEGPVLSLPPRRRSAIAFLIDLYVTRAPSSSVP
VSPSSHSPPPPPLVPSSPPPPLISPLSTGSSELSRNNPVPACQQKAALLP
LGLVEALDSTIKSTIAEALELFVPPVPGIPAGHWWWWSSVQIVNFHQC
back to top

mRNA from alignment at KK037247.1:277261..278107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7980 ID=rna7980|Name=rna7980|organism=Nannochloropsis gaditana|type=mRNA|length=847bp|location=Sequence derived from alignment at KK037247.1:277261..278107- (Nannochloropsis gaditana)
ACAGAGGGCACGTGGATGCCAGGGCTGAAATCAAGGAGACTGGCAGGAGG
ATTCCATTCCATCATCCCTGAGGGCCCTGTTCTTTCCCTTCCCCCCAGGC
GGCGCAGTGCCATCGCTTTTCTCATCGACTTGTACGTCACTCGCGCTCCC
TCTTCCTCGGTGCCCGTCTCCCCTTCCTCCCATTCTCCCCCTCCTCCTCC
TCTCGTCCCTTCCTCCCCCCCTCCGCCTCTTATATCGCCTCTATCCACGG
GCTCCTCGGAGCTTTCTCGGAACAACCCAGTCCCAGCCTGTCAACAGAAG
GCAGCTCTACTTCCCTTGGGACTGGTGGAGGCCCTGGACAGCACCATCAA
GAGCACTATTGCAGGTAGGAAAAGGGAAGAGGAGGCAAAGCATCTGGATG
CACCACGGCCATGTCCCCTTGACAGCGGTTCAGATCCCCGATCCACGTCC
TCCTCGTCCTTCCCATTCCTCGCTCTCTCAGAGGCCCTCGAACTCTTCGT
CCCGCCTGTTCCGGGTATCCCTGCGGGGCACTGGTGGTGGTGGAGTAGCG
TCCAAATCGTCAATTTCCACCAGTGCTGAGGAGAAGGCAGGAAGAAAGGG
CGGTGCGAAGGCGCATTGAAGAGGCGATGTGCGAGGAAAGATGTTGCTGG
ATGACCACCAGCTTTGAATGAAGCGTGTACGAGTAAAGTGTAATTAAATT
AATAAAAGGATCACAGAATATACGGCAGCGATAGGAGACTGTTCGATGAG
GTGAAGAGGAGATTGTTTTCGGATGGAAAAACATGGGAACGATCTCAGAA
ATGAAAGAGGAAATAGAAGAAAGAAAATCTTGCAAAATTTATCCACC
back to top

Coding sequence (CDS) from alignment at KK037247.1:277261..278107-

>rna7980 ID=rna7980|Name=rna7980|organism=Nannochloropsis gaditana|type=CDS|length=894bp|location=Sequence derived from alignment at KK037247.1:277261..278107- (Nannochloropsis gaditana)
AGGCCCTCGAACTCTTCGTCCCGCCTGTTCCGGGTATCCCTGCGGGGCAC
TGGTGGTGGTGGAGTAGCGTCCAAATCGTCAATTTCCACCAGTGCTGAAT
GCCAGGGCTGAAATCAAGGAGACTGGCAGGAGGATTCCATTCCATCATCC
CTGAGGGCCCTGTTCTTTCCCTTCCCCCCAGGCGGCGCAGTGCCATCGCT
TTTCTCATCGACTTGTACGTCACTCGCGCTCCCTCTTCCTCGGTGCCCGT
CTCCCCTTCCTCCCATTCTCCCCCTCCTCCTCCTCTCGTCCCTTCCTCCC
CCCCTCCGCCTCTTATATCGCCTCTATCCACGGGCTCCTCGGAGCTTTCT
CGGAACAACCCAGTCCCAGCCTGTCAACAGAAGGCAGCTCTACTTCCCTT
GGGACTGGTGGAGGCCCTGGACAGCACCATCAAGAGCACTATTGCAGAGG
CCCTCGAACTCTTCGTCCCGCCTGTTCCGGGTATCCCTGCGGGGCACTGG
TGGTGGTGGAGTAGCGTCCAAATCGTCAATTTCCACCAGTGCTGAATGCC
AGGGCTGAAATCAAGGAGACTGGCAGGAGGATTCCATTCCATCATCCCTG
AGGGCCCTGTTCTTTCCCTTCCCCCCAGGCGGCGCAGTGCCATCGCTTTT
CTCATCGACTTGTACGTCACTCGCGCTCCCTCTTCCTCGGTGCCCGTCTC
CCCTTCCTCCCATTCTCCCCCTCCTCCTCCTCTCGTCCCTTCCTCCCCCC
CTCCGCCTCTTATATCGCCTCTATCCACGGGCTCCTCGGAGCTTTCTCGG
AACAACCCAGTCCCAGCCTGTCAACAGAAGGCAGCTCTACTTCCCTTGGG
ACTGGTGGAGGCCCTGGACAGCACCATCAAGAGCACTATTGCAG
back to top
Synonyms
Publications